BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317076
Length=2178
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01160.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3022 0.0
> AT3G01160.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153
(InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins
in 1057 species: Archae - 109; Bacteria - 2369; Metazoa
- 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other
Eukaryotes - 13360 (source: NCBI BLink). | chr3:54541-57462
REVERSE LENGTH=2269
Length=2269
Score = 3022 bits (1636), Expect = 0.0
Identities = 2014/2188 (92%), Gaps = 60/2188 (3%)
Strand=Plus/Plus
Query 1 ATGGGTTCGAAGAACAAGAAGCAAAGGAAAGGAGAGAGCA---ATGAAGCTAAAGGATCC 57
|||||||| ||||| ||||||||||||||||||||||||| | |||||||||||||||
Sbjct 14 ATGGGTTCAAAGAATAAGAAGCAAAGGAAAGGAGAGAGCATTGAAGAAGCTAAAGGATCC 73
Query 58 GGTGGAGTCGCAGACGAAGGAAACGAAATGATTAAGGATCCAAGGTTTTCGTCGGCGCAC 117
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 AGTGGAGTCGCAGAGGAAGGAAACGAAATGATTAAGGATCCAAGGTTTTCGTCGGCGCAC 133
Query 118 ACTGACCCTAAATTCCGTAGGATTCGGAGGCGTGACTCCAAAGTCGCGATTGATTCTC-G 176
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || | |
Sbjct 134 ACGGACCCTAAATTCCGTAGGATGCGGAGGCGTGACTCCAAAGTCGCCATTGACTC-CAG 192
Query 177 ATTCCAG-CTGATGTTCAATGATAAGCGATTTGCTAATGGTTCTGCTCCTGTCGATAAGC 235
||||||| || ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 193 ATTCCAGCCT-ATGTTCAATGATAAGCGATTTGCCACTGGTTCTGCTCCTGTCGATAAGC 251
Query 236 GTGGCAAGCGGAGAAGAGGAGGCAGTGGCAAGGGTTCTCTTCGAGAGTTTTATCGAATTG 295
|||||||||| |||| |||||||| |||||| | ||| |||||||||||||||||||
Sbjct 252 GTGGCAAGCGTAGAACAGGAGGCACTGGCAAAGATTCGCTTCGAGAGTTTTATCGAA--- 308
Query 296 Tagatgaagatgagaagaag-aagaagaaAACTGACGAGGAATCTGGGGATGAGAGCGAG 354
| ||||||| |||| | ||| |||||||||| |||||||||||||||||||||| |
Sbjct 309 T---TGAAGAT--GAAG--GTAAGCAGAAAACTGAGGAGGAATCTGGGGATGAGAGCGGG 361
Query 355 AGTGAGAAACAGATGATTGATCTGAAATCCGAAAAATCTAGCGATGTAGAATC--A-G-A 410
||||||| | |||| | |||| |||||||||||||||||||| |||||||||| | | |
Sbjct 362 AGTGAGACAGAGATAAATGATTTGAAATCCGAAAAATCTAGCCATGTAGAATCTGAGGAA 421
Query 411 G-GA-AGAGAGTGAGCTAAAGGTTGCTTCTTTGGATGAGGAAGACTCTGACGAGAAAGCA 468
| || |||||||||||||||||||||||||||||||| | | | ||||| |||||||||
Sbjct 422 GAGAGTGAGAGTGAGCTAAAGGTTGCTTCTTTGGATGATG-A-A-TCTGATGAGAAAGCA 478
Query 469 GACTCTGACGAGGAAGCAGACTCTGAAGAGGTATCGCAGGAGGAGGAGGAAGAAGAAGAG 528
|||||| |||| || | | | | | | | ||||||||||||||||||||
Sbjct 479 GACTCT------GAAG-AG--T-T----A--T-CCTC-GCAGGAGGAGGAAGAAGAAGAG 520
Query 529 GATGATACAGATGAGGACGATGAAGCTATCTATGAAGACGAGGCACCAGAAATTCCTGAA 588
||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |||
Sbjct 521 GATGATACAGATGAGGACGATGAAGCTATGTATGAAGATGAGGGACCAGAAATTCCGGAA 580
Query 589 GAGAACATTCCGTTTATCCCAGAAGAAACTCACAGACTGGCTATCGTTAACATGGATTGG 648
|||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 581 GAGAACATACCGCTTATCCAAGAAGAAACTCATAGACTGGCTATCGTTAACATGGATTGG 640
Query 649 AGACATGTCTCTGCTAAAGACTTGTACGTAGTTTTGAATTCGTTTCTGCCAAAAGATGGG 708
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 641 AGACATGTCTCTGCTAAAGACTTGTACGTAGTGTTGAATTCGTTTCTGCCAAAAGATGGG 700
Query 709 CGCATTTTGTCAGTGGCAGTCTATCCATCTGAATTTGGACTTGAGCGAATGAAAGAGGAG 768
|||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||
Sbjct 701 CGCATTTTGTCAGTTGCGGTCTATCCATCTGAGTTCGGACTTGAGCGAATGAAAGAGGAG 760
Query 769 GAAATCCATGGGCCGGTAATTGATGGTGACAAAAAGAATGAAGGTAGTGATGATGAAGAT 828
|||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 761 GAAATCCATGGGCCGGTAATTGATGGCGACAAAAAGAATGACGCTAGTGATGATGAAGAT 820
Query 829 GAAGAAGAGGAGGAAGATGAGGATGTCATCAACCAGAAGCTACGTGCCTATGAAATAAGT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GAAGAAGAGGAGGAAGATGAGGATGTCATCAACCAGAAGCTACGTGCCTATGAAATAAGT 880
Query 889 AGATTAAAGTATTATTTCGCTGTTGCCGAATGTGATTCAAGTGCTACTGCAGATCACTTG 948
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 881 AGATTAAAGTATTATTTCGCTGTTGCCGAATGTGATTCAAGTGCTACTGCAGATTACTTG 940
Query 949 TACAAATCATGTGATGGAATTGAGTTTGAGAGATCCTCAAACAAGCTAGACCTAAGATTT 1008
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 941 TACAAATCATGTGATGGAATTGAGTTTGAGAGATCATCAAACAAGCTCGACCTAAGATTT 1000
Query 1009 ATTCCCGATTCCATGGAATTCAAACATCCACCTCGGGATATTGCATCTGAGGCACCTGCT 1068
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1001 ATTCCGGATTCCATGGAATTCAAACATCCACCTCGTGATATTGCATCTGAGGCACCAGCT 1060
Query 1069 GGTTATGAAGGTTTAGATTTTCAGAGCCGAGCACTGCAGTTGAGCAAAGTTAATCTTTCT 1128
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1061 GGTTATGAAGGTTTAGATTTTCAGAGCCGAGCTCTGCAGATGAGCAAAGTTAATCTTTCT 1120
Query 1129 TGGGATGAAGATGAACCACACCGCATTAAGACCTTAAATCAGAAATTCAACCCTGAACAG 1188
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1121 TGGGATGAAGATGAACCGCACCGGATTAAGACCTTAAATCAGAAATTCAATCCTGAACAG 1180
Query 1189 TTGGCAAATCTTGAGATGAAGGAGTTTTTAGCTTCTGGTGAGAGTGATTCTGATGACGAA 1248
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1181 TTGGCAAATCTTGAGATGAAGGAGTTTTTAGCTTCTGATGAGAGTGATTCTGATGAGGAA 1240
Query 1249 GACGACGACATCAATGAAGATATTAACCAGAGTAAAAGAAAGGAGGATAAGAGGAAAGAT 1308
|||||| |||||||| ||||||||||||||||| ||| |||| |||| |||||||
Sbjct 1241 GACGACTTGGGCAATGAAGTTATTAACCAGAGTAAAA-AAA--AGGACAAGAAGAAAGAT 1297
Query 1309 AAGTACCGAGCTTTAATTGAATCCGAAGATGTTGATTCTGATAAAGACGTGGAGGAGGAG 1368
||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1298 AAGTACCGAGCTTTAATAGAAGCCGAAGATGTTGATTCTGATAAAGACCTGGAGGAGGAG 1357
Query 1369 GATGGCCAGGATATGGAGGTAACATTCAATACCGGGTTAGAAGATCTTAGTAAAGAGATT 1428
||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1358 AATGACCAGGATATGGAGGTAACATTCAATACCGGTTTAGAAGATCTTAGCAAAGAGATT 1417
Query 1429 CTTAAAAAGAAAGACAGCAAGTCAGAATCAGTGTGGGAAACATATTTAAGGCAGAGACGT 1488
|||||||||||||||| | |||||||||| ||||||||||||||| |||||||||||||
Sbjct 1418 CTTAAAAAGAAAGACAACCAGTCAGAATCGGTGTGGGAAACATATCTAAGGCAGAGACGC 1477
Query 1489 GAGAAGAAGAGAGCCAGGAAGAATAAACAGAACGATGATTCTTCTTCTCCGGATGATGAT 1548
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1478 GAGAAGAAGAGAGCCAGGAAGAATAAACAGAAGGATGATGATTCTTCTCCGGATGATGAC 1537
Query 1549 GATGATTATAACATTGATCGAAAGGCAGTGAAAGATGATGGTGATGACGATTTCTTTATG 1608
|| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1538 GACGATTATAACATTGATAGAAAGGCAGTGAAAGATGATGGAGATGACGATTTCTTTATG 1597
Query 1609 GAAGAACCTCCTCTCaagaaaaagaagaaagaaggaaagacgaagaagaagggtttagag 1668
|| ||||||||||| ||||| |||||||||||||||||||| || | ||||| || |
Sbjct 1598 GAGGAACCTCCTCTTAAGAAGAAGAAGAAAGAAGGAAAGAC-AA-A-GAAGG----AG-G 1649
Query 1669 gaggaagtagcagcggaagaaaaaagcagaGCGGAGCTTGAGTTGTTACTAGCTGATGAG 1728
| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1650 -A--A-GTAGCAGCGGAAGAAAAAAGTAGAGCGGAGCTTGAGTTGTTACTAGCTGATGAG 1705
Query 1729 AATGCAGGAGATGGTAATGGTCTGAAAGGGTATAATATTAAACGGAAAGGTaaaaaagga 1788
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1706 AATGCAGGAGATGGTAATGGTCTGAAAGGGTATAATATTAAACGGAAAGCTAAAAAAGGA 1765
Query 1789 aaaaCTGATATTTCGGAAGAGAAGATACCTGCGGCTGATCTTGATGATCCGAGATTCTCA 1848
|| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 1766 AAGACTGATATTTCGGAAGACAAGATACCTGCTGCTGAACTTGATGATCCGAGATTCTCA 1825
Query 1849 GCTCTATTCTCATCTCCTTTCTATGCTCTAGACCCTACGGACCCACAGTTTAAAAGGAGT 1908
||||||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 1826 GCTCTATTCTCGTCTCCTTACTATGCCCTAGACCCTACGGATCCACAGTTTAAAAGGAGT 1885
Query 1909 GCGACTTATGCAAGGCAATTAGCTGCGAAGCAAAAGGAAGATCCAAAAAGCCACGAGGAT 1968
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1886 GCGACTTATGCAAGGCAATTAGCTTTGAAGCAAAAGGAAGATCCAAAAGGCCACGAGGAT 1945
Query 1969 GTGAAAGCGCCAAAGGAGAAACATGAGTTGAATTCAGATGGTAACTTGGGGTCGAAGAAG 2028
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1946 GTGAAAGCGCCAAAGGAGAAACAGGAGTTGAATTCAGATGGTAACTTGGGGTCTAAGAAG 2005
Query 2029 GAGAGACACGAACTGACTTCTACTGTCAAATCTTTGAAGATGAAGATGATGAACAAGGAT 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 GAGAGACACGAACTGACTTCTACTGTCAAATCTTTGAAGATGAAGATGATGAACAAGGAT 2065
Query 2089 TCTGAGAAGAAAAAGGCGGGAAATGCAGTGTCTTCGTCCACTTTGGCTCAGCGAATTAAG 2148
|||||||||||||| ||||||||| ||| |||||| || |||||||||||||||||||||
Sbjct 2066 TCTGAGAAGAAAAAAGCGGGAAATCCAGCGTCTTCATCGACTTTGGCTCAGCGAATTAAG 2125
Query 2149 AAGAAAGCCAAGGATTTATCAAACAAAT 2176
||||||||||| |||||||| || ||||
Sbjct 2126 AAGAAAGCCAAAGATTTATCCAAGAAAT 2153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108031572840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5