BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317081
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01090.2 | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 |... 2582 0.0
AT3G29160.1 | Symbols: AKIN11, SNRK1.2, KIN11, ATKIN11 | SNF1 k... 856 0.0
> AT3G01090.2 | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10
| chr3:31181-34487 REVERSE LENGTH=2208
Length=2208
Score = 2582 bits (1398), Expect = 0.0
Identities = 1482/1523 (97%), Gaps = 3/1523 (0%)
Strand=Plus/Plus
Query 11 CAGGCGGTAGAAGTGGGGTAGAATCGATTCTACCAAATTACAAGCTTGGGAGAACTCTTG 70
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CAGGCAGTAGAAGTGGGGTAGAATCGATTCTACCAAATTACAAGCTTGGGAGAACTCTTG 489
Query 71 GTATTGGTTCCTTTGGTAGGGTGAAGATAGCTGAGCACGCATTGACAGGACATAAAGTTG 130
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 490 GTATTGGTTCCTTTGGTAGGGTGAAGATAGCTGAGCATGCATTGACAGGACATAAGGTTG 549
Query 131 CAATCAAGATCCTCAATCGTCGCAAAATCAGGAACATGGAGATGGAGGAGAAAGTGAGGA 190
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 550 CTATCAAGATCCTCAATCGTCGCAAAATCAAGAACATGGAGATGGAGGAGAAAGTGAGGA 609
Query 191 GAGAGATCAAAATCTTGAGACTATTTATGCATCCTCACATCATCCGTCTCTATGAGGTTA 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GAGAGATCAAAATCTTGAGACTATTTATGCATCCTCACATCATCCGTCTCTATGAGGTTA 669
Query 251 TAGAGACTCCGACAGATATTTATCTTGTCATGGAGTATGTGAACTCTGGTGAGCTATTTG 310
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TAGAGACTCCCACAGATATTTATCTTGTCATGGAGTATGTGAACTCTGGTGAGCTATTTG 729
Query 311 ACTACATTGTAGAGAAGGGTAGATTGCAGGAGGATGAGGCGAGGAACTTCTTTCAGCAGA 370
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 730 ACTATATTGTTGAGAAGGGTAGATTGCAGGAGGATGAGGCGAGGAACTTTTTTCAGCAGA 789
Query 371 TAATATCTGGAGTGGAATACTGCCATCGAAATATGGTGGTTCACAGAGACCTCAAGCCTG 430
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 790 TAATATCAGGAGTGGAATACTGCCATCGAAACATGGTGGTTCACAGAGACCTCAAGCCTG 849
Query 431 AAAACTTGCTTTTGGATTCTAAATGCAATGTAAAGATTGCTGATTTTGGCCTGAGCAATA 490
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 850 AAAACTTGCTTTTGGACTCTAAATGCAATGTAAAGATTGCTGATTTTGGCCTGAGCAACA 909
Query 491 TAATGCGAGATGGTCATTTTTTGAAGACAAGTTGTGGAAGTCCAAATTATGCGGCTCCAG 550
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 910 TAATGCGAGATGGTCATTTTTTGAAGACAAGTTGTGGAAGTCCAAATTATGCCGCTCCAG 969
Query 551 AGGTCATTTCGGGAAAATTATATGCTGGGCCTGAAGTAGATGTCTGGAGCTGTGGTGTGA 610
|||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 970 AGGTAATTTCGGGCAAGTTATATGCTGGCCCTGAAGTAGATGTCTGGAGCTGTGGTGTGA 1029
Query 611 TACTCTACGCTCTTCTCTGTGGGACTCTTCCATTTGATGATGAAAACATTCCCAACCTTT 670
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1030 TACTCTACGCTCTTCTCTGTGGGACGCTTCCATTTGATGATGAAAACATTCCCAACCTTT 1089
Query 671 TTAAGAAGATAAAGGGAGGGATATATACATTACCTAGCCATTTATCTGCTGGTGCTAGAG 730
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1090 TTAAGAAGATAAAGGGAGGGATATACACATTACCTAGCCATTTATCTCCTGGTGCTAGAG 1149
Query 731 ATTTGATCCCCCGGATGCTTGTAGTTGACCCCATGAAACGAGTAACCATCCCTGAGATCC 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 ATTTGATCCCCCGGATGCTTGTAGTTGACCCCATGAAACGAGTAACCATCCCTGAGATCC 1209
Query 791 GGCAACACCCTTGGTTCCAAGCTCACCTTCCGAGGTATTTAGCTGTTCCTCCTCCAGATA 850
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1210 GGCAACACCCTTGGTTCCAAGCTCATCTTCCGAGGTATTTAGCTGTTCCTCCTCCAGATA 1269
Query 851 CAGTGCAACAGGCGAAAAAGATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGAT 910
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 CTGTGCAACAGGCAAAAAAGATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGAT 1329
Query 911 TTGACAGAAACCACCTCATTGAATCTCTCCGCAACCGGACCCAGAATGATGGCACTGTGA 970
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1330 TTGACAGAAACCACCTCATCGAATCGCTCCGCAACCGAACCCAGAATGATGGCACTGTGA 1389
Query 971 CATACTATCTGATACTGGACAATCGTTTCCGTGCCTCTAGTGGTTATCTCGGGGCCGAGT 1030
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1390 CGTACTATCTGATACTGGACAATCGTTTCCGTGCCTCTAGTGGTTATCTCGGGGCTGAGT 1449
Query 1031 TTCAAGAGACCATGGAAGGTACTCCCCGTATGCATCCAGCAGAAAGTGTCGCTTCACCTG 1090
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1450 TTCAAGAGACCATGGAAGGTACTCCCCGTATGCATCCAGCAGAAAGCGTTGCTTCACCTG 1509
Query 1091 TTAGCCATCGGCTTCCAGGATTGATGGAATATCAAGGAGTTGGCTTGAGATCTCAATACC 1150
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1510 TTAGCCATCGGCTTCCAGGACTGATGGAATATCAAGGAGTTGGCTTGAGATCTCAATACC 1569
Query 1151 CTGTTGAAAGAAAATGGGCTCTTGGACTTCAGTCTCGGGCTCATCCCCGTGAAATAATGA 1210
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 CTGTTGAGAGAAAATGGGCTCTTGGACTTCAGTCTCGGGCTCATCCCCGTGAAATAATGA 1629
Query 1211 CGGAAGTCCTGAAAGCCCTGCAAGATTTGAATGTGTGTTGGAAGAAGATAGGGCACTACA 1270
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1630 CGGAAGTCCTGAAAGCCCTGCAAGATTTGAATGTATGTTGGAAGAAGATAGGGCACTACA 1689
Query 1271 ACATGAAGTGCAGATGGGTTCCTAACAGCA---CAGATGGTATGCTCAGTAACTCGATGC 1327
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1690 ACATGAAGTGCAGATGGGTTCCTAACAGCAGCGCAGATGGTATGCTCAGTAACTCGATGC 1749
Query 1328 ACGATAGCAACTACTTTGGAGACGAGTCCAGCATAATAGAGAACGATGCAGCTGTTAAGT 1387
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1750 ACGATAACAACTACTTTGGAGACGAGTCCAGCATAATAGAGAACGAAGCAGCTGTTAAGT 1809
Query 1388 CGCCGAATGTTGTCAAGTTTGAAATTCAGTTGTATAAAACTCGGGACGACAAGTATCTAC 1447
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 CGCCCAATGTTGTCAAGTTTGAAATTCAGTTGTATAAAACTCGGGACGACAAGTATCTAC 1869
Query 1448 TGGATTTGCAGAGAGTACAAGGTCCTCAGTTCTTGTTCTTGGATCTCTGTGCTGCTTTTC 1507
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1870 TGGATTTGCAGAGAGTACAAGGTCCTCAGTTCTTGTTCTTGGATCTGTGTGCTGCTTTTC 1929
Query 1508 TTGCTCAGCTCCGAGTCCTCTGA 1530
|||||||||||||||||||||||
Sbjct 1930 TTGCTCAGCTCCGAGTCCTCTGA 1952
> AT3G29160.1 | Symbols: AKIN11, SNRK1.2, KIN11, ATKIN11 | SNF1
kinase homolog 11 | chr3:11128625-11132065 REVERSE LENGTH=2067
Length=2067
Score = 856 bits (463), Expect = 0.0
Identities = 1186/1527 (78%), Gaps = 82/1527 (5%)
Strand=Plus/Plus
Query 24 TGGGGTAGAATCGATTCTACCAAATTACAAGCTTGGGAGAACTCTTGGTATTGGTTCCTT 83
||| || ||||||||| |||| |||||||||||||| | ||||||||| ||||| || ||
Sbjct 293 TGGAGTGGAATCGATTTTACCGAATTACAAGCTTGGTAAAACTCTTGGAATTGGGTCTTT 352
Query 84 TGGTAGGGTGAAGATAGCTGAGCACGCATTG--ACAGGACATAAAGTTGCAATCAAGATC 141
||| | |||||| ||||| ||||| | ||| ||||| ||||| ||||| ||||| |||
Sbjct 353 TGGGAAGGTGAAAATAGCAGAGCATG--TTGTCACAGGGCATAAGGTTGCTATCAAAATC 410
Query 142 CTCAATCGTCGCAAAATCAGGAACATGGAGATGGAGGAGAAAGTGAGGAGAGAGATCAA- 200
|| |||||||| || |||| ||||||||||||||| |||||||||||||| ||||| ||
Sbjct 411 CTTAATCGTCGTAAGATCAAGAACATGGAGATGGAAGAGAAAGTGAGGAGGGAGATTAAG 470
Query 201 AATCTTGA-GACTATTTATGCATCCTCACATCATCCGTCTCTATGAGGTTATAGAGACTC 259
| || | | | | |||||||||||||| || || || | |||||||| |||||||| |
Sbjct 471 ATTC-T-ACGGTTGTTTATGCATCCTCATATTATTCGGCAGTATGAGGTAATAGAGAC-C 527
Query 260 -CGACAGATATTTATCTTGTCATGGAGTATGTGAACTCTGGTGAGCTATTTGACTACATT 318
||| || |||||| |||| ||||||||||| || ||||| ||||| ||||| || |||
Sbjct 528 ACGAGTGACATTTATGTTGTGATGGAGTATGTCAAGTCTGGAGAGCTCTTTGATTATATT 587
Query 319 GTAGAGAAGGGTAGATTGCAGGAGGATGAGGCGAGGAACTTCTTT-CAGCAGATAATATC 377
|| ||||| || ||||| || || |||||||| | ||||| ||| ||||||||||||||
Sbjct 588 GTTGAGAAAGGCAGATTACAAGAAGATGAGGCTCGTAACTT-TTTCCAGCAGATAATATC 646
Query 378 TGGAGTGGAATACTGCCATCGAAATATGGTGGTTCACAGAGACCTCAAGCCTGAAAACTT 437
||| || || ||||||||||| |||||||| || || |||||||| |||||||| || ||
Sbjct 647 TGGTGTAGAGTACTGCCATCGTAATATGGTTGTCCATAGAGACCTGAAGCCTGAGAATTT 706
Query 438 GCTTTTGGATTCTAAATGCAATGTAAAGATTGCTGATTTTGGCCTGAGCAATATAATGCG 497
|| |||||||| | || ||| | |||||||| || ||||| |||| ||| | |||||
Sbjct 707 ACTATTGGATTCGAGGTGTAATATTAAGATTGCAGACTTTGGGTTGAGTAATGTTATGCG 766
Query 498 AGATGGTCATTTTTTGAAGACAAGTTGTGGAAGTCCAAATTATGCGGCTCCAGAGGTCAT 557
|||||||||||| | ||||| ||||||||||| || || || || ||||| ||||| ||
Sbjct 767 GGATGGTCATTTTCTAAAGACGAGTTGTGGAAGCCCCAACTACGCTGCTCCCGAGGTTAT 826
Query 558 TTCGGGAAAATTATATGCTGGGCCTGAAGTAGATGTCTGGAGCTGTGGTGTGATACTCTA 617
|| || |||||||||||||| |||||||||||||| ||||| || || || ||| | ||
Sbjct 827 ATCAGGTAAATTATATGCTGGACCTGAAGTAGATGTATGGAGTTGCGGAGTTATATTGTA 886
Query 618 CGCTCT-TCTCTGTGGGACTCTTCCATTTGATGATGAAAACATTCCCAACCTTTTTAAGA 676
|||||| | | || || |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 887 CGCTCTAT-TATGCGGTACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTCAAGA 945
Query 677 AGATAAAGGGAGGGATATATACA-TTACCTAGCCATTTATC-TGCTG-GTGCTAGAGATT 733
| || ||||| ||||| || || || || || |||||||| | ||| | ||||||||
Sbjct 946 AAATTAAGGGTGGGATTTACACTCTT-CCAAGTCATTTATCAT-CTGAG-GCTAGAGACC 1002
Query 734 TGATCCCCCGGATGCTTGTAGTTGACCCCATGAAACGAGTAACCATCCCTGAGATCCGGC 793
||||||| |||||||| |||||||||| |||||||| | ||||| ||||||||||| |
Sbjct 1003 TGATCCCAAGGATGCTTATAGTTGACCCGGTGAAACGAATCACCATTCCTGAGATCCGTC 1062
Query 794 AACACCCTTGGTTCCA-AGCTCACCTTCCGAGGTAT-TTAGCTGT-TCCTCCTCCAGATA 850
|||||| ||||||||| | |||| || || | ||| || ||||| || ||| || ||||
Sbjct 1063 AACACCGTTGGTTCCAGA-CTCATCTCCCTCGTTATCTT-GCTGTCTC-TCCACCGGATA 1119
Query 851 CAGT-GCAACAGGCGAAAAAGATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGA 909
|||| | | ||||| |||||||| | |||||||| | |||||||| | || ||||||
Sbjct 1120 CAGTAG-AGCAGGCTAAAAAGATCAATGAGGAGATAGTTCAAGAAGTGGTTAACATGGGA 1178
Query 910 TTTGACAGAAACCACCTCATTG-AATCTCTCCGCAACCGGACCCAGAATGATGGC-ACTG 967
||||| |||||||| | ||| ||||||| |||||| | || || || |||| | ||||
Sbjct 1179 TTTGATAGAAACCAGGTT-TTGGAATCTCTACGCAACAGAACACAAAACGATG-CTACTG 1236
Query 968 TGACATACTATCTGATACTGGACAATCGTTTCCGTGCCTCTA-GTGGTTATCTCGGGGCC 1026
| |||||||| ||| || |||| || || ||||||| || | |||| ||||| | ||
Sbjct 1237 TTACATACTACCTGTTATTGGATAACCGGTTCCGTGT-TCCAAGTGGCTATCTAGAATCC 1295
Query 1027 GAGTTTCAAGAGACCATGGA-AGGTACT-CC---CCGTATGCATC-CAGCAGAAA-GTGT 1079
|||||||| ||||| | || || | | || || ||||| | || | ||| | |
Sbjct 1296 GAGTTTCAGGAGACAACAGACAG-TGGTTCCAATCC-TATGCG-CACACCTGAAGCGGG- 1351
Query 1080 CGCTTCACCTGTTAG-CCA-TCGGCTTCCAGGAT-TGATGGAAT-ATCAA-GGAGTTGGC 1134
|||||||||||| || ||| | || |||| | | || |||| | | | | || |||||
Sbjct 1352 CGCTTCACCTGT-AGGCCACT-GGATTCCTGCACATG-TGGA-TCA-CTACGG-GTTGGG 1405
Query 1135 TTG-A-GATCTCAA-TACCCTGTTGAAAGAAAATGGGCTCTTGGACTTCAGTCTCGGGCT 1191
| | |||| ||| | ||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1406 A-GCAAGATCACAAGT-CCCTGTTGATCGAAAATGGGCTCTTGGACTTCAGTCTCATGCG 1463
Query 1192 CATCCCCGTGAAATAATGACGGAAGTCCTGAAAGCCCTGCAAGATTTGAATGTGTGTTGG 1251
||||| |||||||| |||| ||||| ||||||| || ||||| | ||||||||||||
Sbjct 1464 CATCCTCGTGAAATCATGAATGAAGTTTTGAAAGCTCTTCAAGAACTCAATGTGTGTTGG 1523
Query 1252 AAGAAGATAGGGCACTACAACATGAAGTG-CAGATGGGTTCCTAACAGCACAGATGGTAT 1310
|||||||| || |||||||||||||| || | ||||||||||| | || || ||
Sbjct 1524 AAGAAGATTGGTCACTACAACATGAAATGTC-GATGGGTTCCTG---GTTTAGCTG--AT 1577
Query 1311 GCTCAGTA-ACTC-GATGCA-CGAT-AGCAACTACTTTGGAGACGAGTCCAGCATAATAG 1366
| |||| | ||| | | || | || ||| | |||| |||| || |||||||| || |
Sbjct 1578 GGTCAGAATACTATGGT-CAACAATCAGCTGC-ACTTCAGAGATGAATCCAGCATCATTG 1635
Query 1367 AGAACGA-TGCAGCTGTTAAGTCGCCGAATGTTGTCAAGTTTGAAATTCAGTTGTATAAA 1425
|| | || || || | | || || | ||| |||| |||||| ||||| | || |||
Sbjct 1636 AGGATGACTGT-GCCATGACTTCACCCACTGTCATCAAATTTGAACTTCAGCTATACAAA 1694
Query 1426 ACTCGGGACGACAAGTATCTA-CTGGATTTGCAGAGAGTACAA-GGTCCTCAGTT-CTTG 1482
| ||||| || ||||| || |||||| | |||||||| || ||||| ||||| ||
Sbjct 1695 GCCCGGGAAGAGAAGTA-CTTGCTGGATATACAGAGAGTT-AACGGTCCGCAGTTTCTC- 1751
Query 1483 TTCTTGGATCTCTGTGCTGCTTTTCTT 1509
||||||||||| || || || ||||||
Sbjct 1752 TTCTTGGATCTATGCGCCGCCTTTCTT 1778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5