BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317082
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01080.1 | Symbols: WRKY58, ATWRKY58 | WRKY DNA-binding prot... 1317 0.0
> AT3G01080.1 | Symbols: WRKY58, ATWRKY58 | WRKY DNA-binding protein
58 | chr3:25507-27449 FORWARD LENGTH=1272
Length=1272
Score = 1317 bits (713), Expect = 0.0
Identities = 959/1070 (90%), Gaps = 47/1070 (4%)
Strand=Plus/Plus
Query 351 TCTTCTCACCTCTCCCATGTTCTTTCCTCCGCAGGCGCCAGCCCAGACCGGCTTTGTCCA 410
|||||||||||| |||||||||||||| |||||| || |||| || |||||| || | |
Sbjct 237 TCTTCTCACCTCGCCCATGTTCTTTCCCCCGCAGTCGTCAGCTCATACCGGC-TT-T--A 292
Query 411 CTCGCAGCCACAGCCGCAACTGCAACCACCAG-GTCCACCACGACCAGACACATTTCCTC 469
| || |||| || || | | | || ||| | |||| |||||||||||| |||||||
Sbjct 293 -T-TCAACCACGGCAGC-AGT-C-ACAACC-GCAACCACAACGACCAGACACGTTTCCTC 346
Query 470 ATCATATGCCGCCATCAACATCCACCGCCGTCCATGGCCGTCAATCATTCGAAGTGTCGA 529
| |||||||| ||||| |||||| |||||||||||| |||||||| || || || || |
Sbjct 347 ACCATATGCCACCATCGACATCCGTCGCCGTCCATGGTCGTCAATCTTTAGACGTTTC-A 405
Query 530 CGCAAGGCGATCAAAGAGCTAGAAACCACTACAATAATCCGGGGAATAATAACAATAATA 589
|||| |||||||||||| ||||||| || |||||||||||| |||||||||||||
Sbjct 406 --CAAGTAGATCAAAGAGCTCGAAACCATTATAATAATCCGGGG---AATAACAATAATA 460
Query 590 ACCGGTCGTATAACGTGGTGAATGTTGATAAACCGGCGGATGACGGTTATAACTGGAGGA 649
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 461 ACCGGTCGTATAACGTTGTGAACGTTGATAAACCGGCGGATGACGGTTATAACTGGAGGA 520
Query 650 AGTACGGACAGAAGCCGATCAAAGGGTGTGAATATCCAAGGAGTTATTACAAATGCACAC 709
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 521 AGTACGGACAAAAGCCTATCAAAGGGTGTGAATATCCAAGGAGTTATTACAAATGTACAC 580
Query 710 ATGTTAACTGTCCGGTTAAGAAGAAAGTTGAACGGTCATCGGATGGACAGATCACTCAGA 769
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 581 ATGTTAACTGTCCGGTGAAGAAGAAAGTCGAACGGTCATCGGATGGACAGATCACTCAGA 640
Query 770 TAATTTACAAGGGTCAACATGATCACGAGAGGCCTCAGAATCGCCGTGGCGGTGGAGGCA 829
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TCATTTACAAAGGTCAACATGATCACGAGAGGCCTCAGAATCGCCGTGGCGGTGGAGGCA 700
Query 830 GAGATTCCACTGAGGTTGGTGATATTCATTTCGTTGGTGGTGCAGGGCAAATGATGGAAT 889
||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 701 GAGATTCCACTGA-------G-----------GTTGGTGGTGCAGGGCAAATGATGGAAT 742
Query 890 CTAGtgatgatagtggttatggtaaggatcatgaagatgataacaatgatgatgatgacg 949
|||||||||||||||||||| ||||||||||||| |||||| | |||||||||| || |
Sbjct 743 CTAGTGATGATAGTGGTTATCGTAAGGATCATGATGATGATGATGATGATGATGAAGATG 802
Query 950 acgatgatCTTCCGGCTTCAAAGATAAGAAAAATAGACGGAGTGTCGACGACTCACCGGA 1009
| || ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 803 ATGAAGATCTTCCGGCTTCAAAGATAAGAAGAATAGACGGTGTGTCGACGACTCACCGGA 862
Query 1010 CGGTGACTGAGCCTAAGATTATCGTTCAGACAAAAAGTGAAGTCGATCTTCTCGACGATG 1069
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 CGGTGACCGAGCCTAAGATTATCGTTCAGACAAAAAGTGAAGTCGATCTTCTCGACGATG 922
Query 1070 GCTATAGATGGCGCAAGTACGGGCAAAAAGTTGTCAAAGGAAATCCCTATCCGAGGAGCT 1129
||||||| ||||| |||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct 923 GCTATAGGTGGCGTAAGTACGGACAAAAAGTTGTCAAAGGAAATCCCCATCCAAGGAGCT 982
Query 1130 ATTATAAATGTACAACGCCAAATTGTACAGTCCGTAAACATGTAGAGAGAGCTTCAACGG 1189
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 983 ATTATAAATGTACAACGCCAAATTGTACGGTCCGTAAACATGTAGAGAGAGCTTCCACGG 1042
Query 1190 ATGCTAAGGCTGTGATTACAACTTACGAAGGTAAACACAACCACGATGTCCCTGCCGCTA 1249
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1043 ATGCTAAGGCTGTGATTACAACTTACGAAGGTAAACACAATCACGATGTCCCTGCCGCTA 1102
Query 1250 GAAACGGTACCGC---AGCT---GC-G--GCGG-GGA-C-GTCTGACCACCATCGTATGA 1297
||||||||||||| ||| || | |||| || | ||||||||||||||||||||
Sbjct 1103 GAAACGGTACCGCGGCAGCAACCGCAGCTGCGGTGGGGCCGTCTGACCACCATCGTATGA 1162
Query 1298 GATCAATGTCGGGGAACAATATGCAACAACATATGAGTTTTGGTAACAATAATAACACTG 1357
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1163 GATCAATGTCGGGGAACAATATGCAACAACATATGAGTTTCGGTAACAATAATAACACAG 1222
Query 1358 GCCAATCTCCGGTTCTTTTGAGGTTGAAAGAAGAGAAAATCACAATTTGA 1407
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GCCAATCTCCGGTTCTTTTGAGGTTGAAAGAAGAGAAAATCACAATTTGA 1272
Score = 364 bits (197), Expect = 1e-99
Identities = 227/242 (94%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGTTGAAGACGATGTATCTTCGATAAGAACGACGACGTTAGTGGCGCCAACAAGA 60
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCGGTTGAAGACGATGTATCTTTGATAAGAACGACGACGTTAGTGGCACCAACAAGA 60
Query 61 CCCACGATTACAGTTCCCCAAAGACCTCCTGCGATCGAAACGGCGGCTTATTTCTTTGGC 120
||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 CCCACGATTACAGTTCCTCATAGACCTCCGGCGATCGAAACGGCGGCGTATTTCTTTGGC 120
Query 121 GGTGGAGATGGGCTTAGTCTGAGCCCAGGACCTCTTTCTTTTGTCTCGTCTTTGTTCGTT 180
|||||||||||||||||||| |||||||| || |||||||||||||| |||||||| |||
Sbjct 121 GGTGGAGATGGGCTTAGTCTAAGCCCAGGGCCACTTTCTTTTGTCTCTTCTTTGTTTGTT 180
Query 181 GACAACTTCCCTGACGTCTTGACGCCGGATAACCAACGGACAACGTCGTTTTCTCAGCTT 240
|| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct 181 GATAACTTCCCTGACGTCTTGACGCCGGATAACCAACGGACGACGTCGTTTACTCATCTT 240
Query 241 CT 242
||
Sbjct 241 CT 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5