BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317083
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01070.1 | Symbols: ENODL16, AtENODL16 | early nodulin-like ... 717 0.0
> AT3G01070.1 | Symbols: ENODL16, AtENODL16 | early nodulin-like
protein 16 | chr3:19592-20719 FORWARD LENGTH=846
Length=846
Score = 717 bits (388), Expect = 0.0
Identities = 463/498 (93%), Gaps = 9/498 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAGACTTGCGGTTTTGGTTGC-GGCGGCGGTGCTTGC-TTT-T-CTGACGGCGAC 56
||||||||| |||||||||||||||| || ||||||||| || ||| | ||| |||||||
Sbjct 68 ATGGCGAGAGTTGCGGTTTTGGTTGCAGG-GGCGGTGCTGGCTTTTCTGCTGGCGGCGAC 126
Query 57 GGAGGTGGCTGCGAAGAAGTGGACGGTGGGCGATAACAAGTTCTGGAATCCTAATATCAA 116
| | ||| | ||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 127 GAATGTGACGGCGAAGAGGTGGACGGTGGGTGATAACAAGTTCTGGAATCCTAATATCAA 186
Query 117 CTATACCATTTGGGCTCAGGACAAACATTTCTACCTTGACGATTGGCTCTATTTTGTGTA 176
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 187 CTATACCATTTGGGCTCAGGACAAACATTTCTACCTCGACGATTGGCTCTATTTTGTATA 246
Query 177 TGAGAGAAACCAATACAACGTCATAGAAGTGAACGAAACCAACTACATAAGCTGCAATCC 236
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 247 TGAGAGAAACCAATACAACGTTATAGAAGTGAACGAGACGAACTACATAAGCTGCAATCC 306
Query 237 CAATAACCCGATCGCTAATTGGAGTCGTGGAGCTGGAAGGGACTTGGTTCATCTTAATGT 296
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 307 CAATAACCCGATCGCAAATTGGAGTCGTGGAGCTGGAAGGGACTTGGTTCATCTCAATGT 366
Query 297 GACAAGGCATTACTATCTGATTAGTGGTAATGGTGGTGGATGTTACGGCGGTATGAAGCT 356
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 367 GACAAGGCATTACTATCTGATTAGTGGTAATGGTGGTGGATGTTACGGAGGTATGAAGCT 426
Query 357 CGCTGTTTTAGTTGAGAAACCGCCTCCTCCACCAGCTGCAGCACCTATCAAGAACAGTGC 416
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 427 CGCTGTTTTAGTTGAGAAACCGCCTCCTCCACCAGCTGCAGCACCTAACAAGAACAGTGC 486
Query 417 AACAAGAACCTT-TACCCTCTCGGGTTTTGCA-AGTCAGTTTGTTATTCCGGTAGCTGTT 474
|| ||||||||| | | |||| |||||||| | ||||||| ||||||| |||||||||
Sbjct 487 AAGAAGAACCTTCT-CGGTCTCCGGTTTTGCCTA-TCAGTTTCTTATTCCAGTAGCTGTT 544
Query 475 TTCGCAGCGGTTGGGACA 492
|||||||| |||||||||
Sbjct 545 TTCGCAGCAGTTGGGACA 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5