BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317104
Length=330
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02242.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 394 3e-109
> AT3G02242.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G02240.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr3:420108-420680 FORWARD LENGTH=336
Length=336
Score = 394 bits (213), Expect = 3e-109
Identities = 300/340 (88%), Gaps = 14/340 (4%)
Strand=Plus/Plus
Query 1 ATGAAGAAGTGGAGTTATGCGAAGTTAATGACCTCAGTTTTATTGTTTCTCTTCGTAA-T 59
||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||| |
Sbjct 1 ATGAAGAAGTGGAGTTATGCGAAGTTAATGACCTCAGCTTTATTGCTTGTCTTCTTAAGT 60
Query 60 CATTCTTCTTTTGGCCTTTCATGGAGGATCAACAGGTGACAATCATC-AGTATGTTCATG 118
||| ||||||||||||||||||| ||||||| |||||||||||||| | |||| |||||
Sbjct 61 -ATTATTCTTTTGGCCTTTCATGGTGGATCAAGAGGTGACAATCATCTA-TATGATCATG 118
Query 119 TGGCCATCGGAGCTAAGGAT-TC--GATGGGACGAAAGTTAAAACATTTGGAACCAAAAA 175
||||||||||| |||||||| || ||||||||||||||||||| ||||| |||||||||
Sbjct 119 TGGCCATCGGAACTAAGGATATCTTGATGGGACGAAAGTTAAAAGATTTGAAACCAAAAA 178
Query 176 CTGAATCGTTGAAAATGATCAATCCAAAAAAGACGAACGAGTTTGAGTATTCAGATCAAG 235
||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 179 CTGAATCGTTGAAAATGATCAATCCCAAAAAGAAGAACGGGTTTGAGTATTCAGATCAAG 238
Query 236 TATCCAATGATTTAT-TAGAAAGAGAAGTATTTTTCGATACT-ATGGCTACGGACTACCG 293
|||| | |||||||| |||| | |||||||||| |||||| | ||||||| ||||||||
Sbjct 239 TATCTAGTGATTTATCTAGACA-AGAAGTATTTGTCGATA-TGATGGCTAGGGACTACCA 296
Query 294 AGGCCTAAAA---AGAAGAAAGCCCCCCATCAACAATTGA 330
||||| |||| ||||| ||||||| || ||||| |||
Sbjct 297 AGGCCCAAAACCCAGAAGCAAGCCCCTCAAAAACAACTGA 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15381931194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5