BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317116
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02370.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 959 0.0
AT3G57360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 760 0.0
> AT3G02370.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G57360.1).
| chr3:484491-485614 FORWARD LENGTH=751
Length=751
Score = 959 bits (519), Expect = 0.0
Identities = 599/636 (94%), Gaps = 11/636 (2%)
Strand=Plus/Plus
Query 25 GAAAAAGAAGCTGGTTTACTATGCTATGATGACGAAGAATATCAATTTGGTGGTTCAG-T 83
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 34 GAAAACGAAGCTGGTTTACTATGCTATGATGACGAAGAATATCAATTTGGTGGTCCAGCT 93
Query 84 GCCCAAATTACAATTCAGAGTAGGATCTTCCAAGGCTCGTTGGATTGCTG----A--A-T 136
|||||||||||||||||||||||||| |||||||||||||||| ||||| | | |
Sbjct 94 -CCCAAATTACAATTCAGAGTAGGATCCTCCAAGGCTCGTTGGAATGCTGAATTAGGATT 152
Query 137 TAGGAATGGCTGAAGTTGAGGTCAAAAGGGGGAAACTTTGGACGACAACTGGAATTATCC 196
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 153 TAGGAATGGCCGAAGTTGAGGTCAAAAGGGGTAAACTTTGGACGACAACTGGAATTATCC 212
Query 197 GTACCGGAAAAACATTTTGTTTCATAGAAGAGGCTCTGTATTTGAGTGAAATTGGAGAGT 256
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GTACCGGAAAAACATATTGCTTCATAGAAGAGGCTCTGTATTTGAGTGAAATTGGAGAGT 272
Query 257 TGCAGCTCTTGGGTGATGAGGATGACGTAGTGATCTCACTGAAGGACTTGTATGGGGAAA 316
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 273 TGCAGCTCTTGGGTGATGAGGATGACGTAGTGATTTCATTGAAGGACTTGTATGGGGAAA 332
Query 317 TTGCAGAGGGAAAATGTGGCTGCTGTTGGGAAAACTATGAGGTTTATAGATACTTAAAGG 376
| || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 333 TAGCGGAGGGAAAATATGGCTGCTGTTGGGAAAACTACGAGGTTTATAGATACTTAAAGG 392
Query 377 GTCTAGGTTACATTCTAGGCAGGCATGGAGTTCCTTGGACTACAAAACATGTTGTGAATA 436
|||| ||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||
Sbjct 393 GTCTTGGTTACATTCTAGGCAGACATGGAGTTCCTTGGACTACAAAATATGCTGTGAATA 452
Query 437 CTACACCAAGTGATGAAGATGGGTCACTTTGTGCTGGAGAATTTTCTC-AAGACAAAGAC 495
||||||||||||||||||||| |||||||||||||| |||||||| || |||||| ||||
Sbjct 453 CTACACCAAGTGATGAAGATGAGTCACTTTGTGCTGCAGAATTTT-TCCAAGACAGAGAC 511
Query 496 TCTATTACCAAACTCCTGAGTGATATGCAGATCTGTGATGCAAGACCGGTGTTTGATGTT 555
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 512 TCTGTTACCAAACTCCTGAGTGATATGCATATCTGTGATGCAAGACCGGTGTTTGATGTG 571
Query 556 TATTTGCCAAACAGCCACTTCAAGAAGTCTTCTCCTGGTGAACCGAGCTTTGTCGCTTGC 615
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 572 TATTTGCCAAACAGCCAGTTCAAGAAGTCTTCTCCTGGTGAACCGAGCTTTGTCACTTGC 631
Query 616 TTCTCGGGAGACTCTCCACCAAGTAAAGAAGAAATT 651
||||||||||||||||||||||||||||||||||||
Sbjct 632 TTCTCGGGAGACTCTCCACCAAGTAAAGAAGAAATT 667
> AT3G57360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G02370.2);
Has 122 Blast hits to 122 proteins in 54 species: Archae -
0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:21225540-21226692
FORWARD LENGTH=867
Length=867
Score = 760 bits (411), Expect = 0.0
Identities = 636/744 (85%), Gaps = 18/744 (2%)
Strand=Plus/Plus
Query 22 AGCGAAAAAGAAGCTGGTTTACTATGCTATGATGACGAAGAATATCAATT-TGGTGGTTC 80
|||||||| |||| |||||| | | | ||||||||||||| | || ||| |||||||||
Sbjct 65 AGCGAAAACGAAGGTGGTTTTCCAAACGATGATGACGAAGAGTTTC-ATTCTGGTGGTTC 123
Query 81 AGTGCCCAAATTACAATTCAGAGTAGGATCTTCCAAGGCTCGTTGGATTGCTGAATTAGG 140
||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 124 AGTGCCCAAGTTACAGTTCAGAGTAGGATCTTCCAAGGCTCGTTGGATTACTGAACTAGG 183
Query 141 AATGGCTGAAGTTGAGGTCAAAAGGGGGAAACTTTGGACGACAACTGGAATTATCCGTAC 200
|||||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||||
Sbjct 184 AATGGCGGAAGTTGAGGTTAAAAGGGGAAAACTTTGGACGACAACTGGAATCATTCGTAG 243
Query 201 CGGAAAAACATTTTGTTTCATAGAAGAGGCTCTGTATTTGAGTGAAATTGGAGAGTTGCA 260
||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 244 TGGAAAGACATATTGCTTCATAGAAGAGGCTCTGTATTTGAGTGAAATTGGAGAGTTACA 303
Query 261 GCTCTTGGGTGATGAGGATGACGTAGTGATCTCACTGAAGGACTTGTATGGGGAAATTGC 320
| |||| ||| ||||||||||| |||||||| || ||||||||||||||| | |||||||
Sbjct 304 GATCTTAGGTAATGAGGATGACATAGTGATCCCATTGAAGGACTTGTATGAGAAAATTGC 363
Query 321 AGAGG-GAAAATGTGGCTGCTGTTGGGAAAACTATGAGGTTTATAGATACTTAAAGGGTC 379
||||| ||||| | || |||| |||||||||||| ||||||||||||||||| |||||||
Sbjct 364 AGAGGAGAAAA-GCGGTTGCTCTTGGGAAAACTACGAGGTTTATAGATACTTGAAGGGTC 422
Query 380 TAGGTTACATTCTAGGCAGGCATGGAGTTCCTTGGAC-TACAAAACATGTTGTGAATACT 438
|||||||||| ||||| |||||||||||| ||||||| | ||| ||| || || ||
Sbjct 423 TAGGTTACATCCTAGGTAGGCATGGAGTTTCTTGGACGTT-AAAGGATGCTGC-AAGAC- 479
Query 439 ACACCAAGTGATGAAGATGGGTCA-CTTTGTGCTGGAGAATTTTCT-CAAGACAAAGACT 496
| || || |||||| | |||| ||| ||||||| |||| | || || ||||| || |
Sbjct 480 -CG--AA-TGGTGAAGAAGAGTCAGCTT-GTGCTGGTGAATGTCCTGCA-GACAATGA-T 532
Query 497 -CTATTACCAAACTCCTGAGTGATATGCAGATCTGTGATGCAAGACCGGTGTTTGATGTT 555
|| | || |||||| || | ||||||||||| |||||||||| | |||||||||| ||
Sbjct 533 ACTGTAACTAAACTCTTGGGAGATATGCAGATTTGTGATGCAAAAGCGGTGTTTGACGTG 592
Query 556 TATTTGCCAAACAGCCACTTCAAGAAGTCTTCTCCTGGTGAACCGAGCTTTGTCGCTTGC 615
||| | |||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 593 TATCTACCAAACAGCCGGTTCAAGAAGTCTTCTCCTGGTGAACCAAGCTTTGTGGCTTGC 652
Query 616 TTCTCGGGAGACTCTCCACCAAGTAAAGAAGAAATTGAAGTCCTGCAAAAGCGTGTAGCT 675
|||||||| |||||||||||||| |||||||| ||| |||||||||||||||| |||||
Sbjct 653 TTCTCGGGGGACTCTCCACCAAGCAAAGAAGATATTAAAGTCCTGCAAAAGCGCATAGCT 712
Query 676 TCACCATTGATGTTCTGTCATATCGTTGAAGGCCGTGCCAGTTTCTTTTCCTTCAATTCC 735
||||||| | ||||||||||||| | | ||||||||||||||||||||||||| |||
Sbjct 713 GCACCATTAACATTCTGTCATATCGCTCAGGGCCGTGCCAGTTTCTTTTCCTTCAGTTCT 772
Query 736 ACGGACCTCCTTGTCTTACCATAA 759
| ||||||| ||||||| |||||
Sbjct 773 ATAGACCTCCCTGTCTTATCATAA 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5