BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg317170

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02885.1 | Symbols: GASA5 | GAST1 protein homolog 5 | chr3:6...   483    5e-136


> AT3G02885.1 | Symbols: GASA5 | GAST1 protein homolog 5 | chr3:638021-639055 
REVERSE LENGTH=640
Length=640

 Score =  483 bits (261),  Expect = 5e-136
 Identities = 283/294 (96%), Gaps = 0/294 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGAATTGTATCAGAAGAAATGCTCTTTTCTTTTTGACTCTTCTCTTTTTACTGTCA  60
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct  45   ATGGCGAATTGTATCAGAAGAAATGCTCTTTTCTTCTTGACTCTTCTCTTTTTATTGTCA  104

Query  61   GTCTCCAACCTCGTTCAGGCTGCTCGTGGTGGTGGCAAACTCCAACCCCAACAATGCAAC  120
            |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct  105  GTCTCCAACCTCGTTCAGGCTGCTCGTGGTGGTGGCAAACTCAAACCCCAACAGTGCAAC  164

Query  121  TCAAAGTGTAGCTACCGTTGTTCAGCAACATCACACAAGAAGCCATGCATGTTCTTTTGC  180
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  165  TCAAAGTGTAGCTTCCGTTGTTCAGCAACATCACACAAGAAGCCATGCATGTTCTTTTGC  224

Query  181  CTCAAGTGTTGCAAAAAATGTCTTTGTGTTCCTTCTGGTACTTACGGCAACAAACAAAGT  240
            ||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |
Sbjct  225  CTCAAGTGTTGCAAAAAATGTCTTTGTGTTCCTCCTGGCACTTTCGGCAACAAACAAACT  284

Query  241  TGTCCATGTTACAACAACTGGAAGACTAAAGAAGGCGGCCCAAAATGTCCTTAA  294
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  285  TGTCCATGTTACAACAACTGGAAGACTAAAGAAGGCCGTCCAAAATGTCCTTAA  338



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13572292230


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5