BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317188
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03500.1 | Symbols: | TatD related DNase | chr3:832929-8343... 1386 0.0
AT5G17570.1 | Symbols: | TatD related DNase | chr5:5792926-579... 370 1e-101
> AT3G03500.1 | Symbols: | TatD related DNase | chr3:832929-834350
FORWARD LENGTH=819
Length=819
Score = 1386 bits (750), Expect = 0.0
Identities = 796/819 (97%), Gaps = 0/819 (0%)
Strand=Plus/Plus
Query 1 ATGAAGTTGTTTGATGCTCATTGCCACCTTCAAGACAAGAGGGTCATCGACAAAGCCTCT 60
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTGTTTGATGCTCATTGTCACCTCCAAGACAAGAGGGTCATCGACAAAGCCTCG 60
Query 61 CAGCTCATATCTGCTGCTTTAGCTGTCGGTGTTACCAATTTCGCTGTCAATGGAACCTCC 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CAGCTCATATCTGCTGCTTTAGCTGTCGGTGTTACCAATTTCGCAGTCAATGGAACCTCC 120
Query 121 GAGAAAGATTGGGACTTGGTGAAAGAGATGGGAGAGACGTATCCTTCTGTTGTTCCTTGC 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGAAAGATTGGAACTTGGTGAAAGAGATGGGAGAGACGTATCCTTCTGTTGTTCCTTGC 180
Query 181 TTTGGACTTCATCCTTGGTTTATTGCTGATAGAAGCCCTCATTGGTTTAAGACATTGAAG 240
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TTTGGACTCCATCCTTGGTTTATTGCTGATAGAAGCCCTCATTGGTTTAAAACATTGAAG 240
Query 241 AAGTTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTGGACAAAGGTCCC 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 AAGTTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTAGACAAAGGTCCC 300
Query 301 TTAGCAGGAGGAATTGATTACTCAGACCAGCTAGTCGTGTTTCGCCCACAGCTTGAACTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTAGCAGGAGGAATTGATTACTCAGACCAGCTAGTCGTGTTTCGCCCACAGCTTGAACTT 360
Query 361 GCAAAAGAACTGAACAAACCAGTAGCAGTTCATTGCATCGATGCATTCGATGATCTCCTC 420
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 GCAAAAGAACTGAACAAACCAGTAGCAGTTCATTGCATCGATGCATTTGATGATCTCCTA 420
Query 421 GAGATAATGAGATCCGTAGGGCCTTTTCCTGCTGGTGTGATTCTTCATTCATTCAATGGT 480
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GAGATAATGAGATCCATAGGGCCTTTTCCTGCTGGGGTGATTCTTCATTCATTCAATGGT 480
Query 481 TCAGCTGAAGTTGTTCCTAAACTCGCTGAGCTTGGTGCATACTTGTCTTTTTCTGGCTGG 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TCAGCTGAAGTTGTTCCTAAACTCGCTGAGCTTGGTGCATACTTCTCTTTTTCTGGCTGG 540
Query 541 TTCACTTATATTGATGAGAAAATTGCGAAGAAGACTTTGAAATCGATTCCTTCCGATAGG 600
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TTCACTTACATTGATGAGAAAATTGCCAAGAAGACTTTGAAATCGATTCCTTCCGATAGG 600
Query 601 TTCTTATTGGAGACGGATTCACCTGATGGGTTACCAAAATCAGATGAGAGTTCTTCGAAT 660
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 601 CTCTTATTGGAGACGGATTCACCTGACGGGTTACCAAAATCAGATGAGAGTTCTTCGGAT 660
Query 661 CCAAAACCAGCTCTCAATGAGCCTGCAAACATTCTTACTGTACTAGATTATGTTGCAAAC 720
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 661 CCAAAACCAACTCTCAATGAGCCTGCAAACATTCTTGCTGTACTAGATTATGTTGCGAAC 720
Query 721 CTGTCAAACATGAAGAAGGAAGAGCTTGCGGAGTTAAGTTATGTGAATTCTGTGAGGTTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGTCAAACATGAAGAAGGAAGAGCTTGCGGAGTTAAGTTATGTGAATTCTGTGAGGTTG 780
Query 781 TTTTCTTATCCAGGTTCTAAATTGCTTACATACCAGTAA 819
||||||||||||||||| |||||||||||| ||||||||
Sbjct 781 TTTTCTTATCCAGGTTCCAAATTGCTTACAGACCAGTAA 819
> AT5G17570.1 | Symbols: | TatD related DNase | chr5:5792926-5794792
FORWARD LENGTH=1212
Length=1212
Score = 370 bits (200), Expect = 1e-101
Identities = 519/665 (78%), Gaps = 54/665 (8%)
Strand=Plus/Plus
Query 1 ATGAAGTTGTTTGATGCTCATTGCCACCTTCAAGACAAGAGGGTCATCGA-CAAAGCCT- 58
||||| |||| || || || || |||||||||||| |||| | ||| | ||||| ||
Sbjct 23 ATGAAACTGTTCGACGCGCACTGTCACCTTCAAGACCCGAGGATTATC-ACCAAAG-CTC 80
Query 59 CTCAGCTCATATCTGCT--G-CTTTAGCTGT-CGGTGT-TACCAATTTCGCTGTCAATGG 113
||||| | | |||| || | | || ||| | ||| || | | |||||| ||||||||
Sbjct 81 CTCAGAT-A-ATCTCCTCCGCCGTT-GCT-TCCGGCGTCT-CTGCTTTCGCCGTCAATGG 135
Query 114 AACCTCCGAGAAAGATTGGGA-CTTGGTGAAAGAGATGGGAGAGACGTATCCTTCTGTTG 172
| |||||||||||||| ||| ||||| ||||||||||||| | || ||||||||||
Sbjct 136 AGTCTCCGAGAAAGATT-GGAGTTTGGTCAAAGAGATGGGAGCTAAATACCCTTCTGTTG 194
Query 173 TTCCTTGCTTT-GGACTTCATCCTTGGTTTATTGCTGATAGAAGCCCTCATTGGTTTAAG 231
||||||||||| ||| | ||||| |||| | | || || || || ||||| |||||| ||
Sbjct 195 TTCCTTGCTTTGGGA-TCCATCCATGGTATGTAGCAGAGAGGAGTCCTCAATGGTTTGAG 253
Query 232 ACATTGAAGAAG-TTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTGGA 290
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 ACATTAAAG-AGTTTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTGGA 312
Query 291 CAAAGG-TCCCTTAGCAGGA-GG-A-ATTGATTACTCAGACCAGCT-AGTCGTGTTTCGC 345
|||||| || | || ||| || | ||||||| |||||| ||| | | ||| |||||
Sbjct 313 CAAAGGGTC--TAAG--GGAAGGGAGATTGATTTCTCAGAACAGGTTAC-CGTCTTTCGT 367
Query 346 CCACAGCTTGAACTTGCAAAAGAACTGAACAAACCAGTAG-CAGTTCATTGCAT-CGATG 403
| |||||||||||||||||| ||| |||| ||||| | | |||||||||| | || ||
Sbjct 368 CAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGC-GTCAGTTCATTGTGTTCG-TG 425
Query 404 CATTCGATGATCTCCTCGAGATAATGAGATCCGTAGGGCCTTTTCCTGCTGGTGTGATTC 463
|||| | ||||| ||||||||| | | ||| ||||||||||||||| |||| || || |
Sbjct 426 CATTTGGGGATCTACTCGAGATATTAAAATCTGTAGGGCCTTTTCCTTCTGGGGTCATGC 485
Query 464 TTCATTCATTCAAT-GG-TTCAGCTGAAGTTG-TTCCTAAACTCGCTGAGCTTGGTGCAT 520
|||| || | | | || ||| ||||| | || ||||| || | ||| |||| |||||||
Sbjct 486 TTCACTCGT--ATTTGGGTTCTGCTGA-GATGGTTCCTGAATTTGCTAAGCTCGGTGCAT 542
Query 521 ACTTGTCTTTTTCTGGCTGGTT-CACTTATAT---TGA-TGAGAAAATTGCGAAGAAGAC 575
| || ||| |||| | |||| | ||||| | ||| |||||||| || |||||||
Sbjct 543 A-TT-TCTCCTTCTC-C-GGTTTC-CTTATGTCCATGAGTGAGAAAAAAGCCAAGAAGA- 596
Query 576 T-TTGAAATC-GATTCCTTCCGATAGGTTCTTATTGGAGACGGATTCACCTGATGGGTTA 633
| |||||| | | |||| || |||||| |||||||||||||||||||||| |||| ||
Sbjct 597 TGTTGAAAGCAG-TTCCATCTGATAGGATCTTATTGGAGACGGATTCACCAGATGCACTA 655
Query 634 CCAAA 638
|||||
Sbjct 656 CCAAA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5