BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317219
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04220.1 | Symbols: AtRLP46, RLP46 | receptor like protein 4... 536 3e-151
AT3G03370.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 237 3e-61
AT4G04221.1 | Symbols: | other RNA | chr4:2035159-2036370 REVE... 128 2e-28
> AT4G04220.1 | Symbols: AtRLP46, RLP46 | receptor like protein
46 | chr4:2033427-2035946 FORWARD LENGTH=2436
Length=2436
Score = 536 bits (290), Expect = 3e-151
Identities = 433/500 (87%), Gaps = 17/500 (3%)
Strand=Plus/Plus
Query 522 CGAACTGCTGACGCTGACAC-TGAGGCAGAACCTGTTCAGTGGTTCTATTCCGTTGTCTG 580
|||||| ||||||||||| | ||||||||||| |||||| | |||| || |||| |||||
Sbjct 606 CGAACTACTGACGCTGAC-CTTGAGGCAGAACATGTTCAATAGTTCCATACCGTCGTCTG 664
Query 581 TATCACAGTTAACGAAGCTCGAAACTTTTGATCTCCAGAACAATTCCTTGTCTTTTGAA- 639
|||||| ||||||||||||| |||| | ||||| |||||||||| |||||||| | ||
Sbjct 665 TATCACGGTTAACGAAGCTCAAAACGATAGATCTTCAGAACAATTTCTTGTCTTCT-AAG 723
Query 640 ATTCCCGACGGTATTGGGAAGTTAGCCAATATATCAACTCTGTCTTTGAGCATGAACAAC 699
||||| || | |||||| || || | |||| ||||||||||||| ||||||||||||||
Sbjct 724 ATTCCAGATGATATTGGAAACTTGGTCAATCTATCAACTCTGTCCTTGAGCATGAACAAG 783
Query 700 TTGTCTGGTGGAATTCCATCGTCCATTCAGAATCTGACAAATCTTGAAACCCTTGAGCTT 759
||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||
Sbjct 784 TTGTCGGGTGGAATTCCATCGTCGATTCATAATCTGAAAAATCTTGAAACCCTTCAGCTT 843
Query 760 GAGAATAACAATGGCTTGTCCGGTGAGATT-CC-TA-CTTGACTGTTTGGTCTTCAGAAG 816
|||||||||||||||||||| ||||||||| || | |||| |||||||||||||||||
Sbjct 844 GAGAATAACAATGGCTTGTCAGGTGAGATTCCCGCAGCTTGGTTGTTTGGTCTTCAGAAG 903
Query 817 CTGAAGATATTGCGG-TTAGGAGG--A-AACAAACTCCAATGGAACAAGAAT-GTCTCTG 871
|||||| || | ||| || | ||| | |||||||||||||||||||| ||| || | ||
Sbjct 904 CTGAAGGTACTACGGCTT-GAAGGAAACAACAAACTCCAATGGAACAATAATGGT-TATG 961
Query 872 TCTATGCACAGTCTAAGTTAACACATCTGTCACTTAGATCTTGTGGCTTAGAAGGGAACA 931
||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 962 TCTTTCCACAGTTTAAGTTAACACATCTGTCACTTAGATCTTGTGGCTTAGAAGGGAATA 1021
Query 932 TTCCGGATTGGCTCAAGAATCAAACAGCTCTTCTTC-CT-GGATCTGAGCATGAACAAAC 989
|||||||||||||||||||||||||||||||| || || |||| ||||||| |||| ||
Sbjct 1022 TTCCGGATTGGCTCAAGAATCAAACAGCTCTTGTTTACTTGGATTTGAGCATTAACAGAC 1081
Query 990 TCGAAGGAAGTTTTCCCAAA 1009
|||||||||| || ||||||
Sbjct 1082 TCGAAGGAAGATT-CCCAAA 1100
Score = 231 bits (125), Expect = 1e-59
Identities = 255/316 (81%), Gaps = 16/316 (5%)
Strand=Plus/Plus
Query 6 GAAGCCATGTCATCTCTCTTACTTCCTCTTGTTCTTCGTCTTCTTCATTTCACAAATATC 65
||||| ||||| |||||| | ||||||||| ||| | | ||||||||| ||||| ||||
Sbjct 6 GAAGCAATGTCTTCTCTCCTGCTTCCTCTTCTTC-T-G-CTTCTTCATACCACAACTATC 62
Query 66 GTTCTCTTGCCCATAAGACCAAATACAATCCCTTCTTGAGTTCAAGAACTTGCTGACTCA 125
|||||||| ||| |||| |||| |||||||||||| ||||||||||||||||||| |||
Sbjct 63 TTTCTCTTGTCCACAAGATCAAAGACAATCCCTTCTCGAGTTCAAGAACTTGCTGATTCA 122
Query 126 AAACATCAATAACCAGTCCACAGCAATAATCACCTTGAAAGGTTTAGAGACATGGAGGCC 185
|||||||| | || | ||| | | | | ||| ||| |||| ||||||||||||
Sbjct 123 CAACATCAAGGA-CA-ACTACA-C----AGC-CTTTG-AAGAATTAGGGACATGGAGGCC 173
Query 186 AAACTCAGATTGCTGCAAGTGGCAACTCGTCAGATGCAACACTCGTTCCCCTACCAGAGA 245
|||||||||||||||||| |||| || ||| | ||| ||| || |||| ||| ||| |||
Sbjct 174 AAACTCAGATTGCTGCAAATGGCTACGCGTGACATGTAACGCTAGTTCGCCTTCCAAAGA 233
Query 246 AGTGATAGACCTAAATCTGCACTCT--CTTATCCTCTCTGGCTCAGTGAGTTCAAGCATT 303
|||||||||||| ||||| | ||| || |||| | |||||| ||| ||||||||||||
Sbjct 234 AGTGATAGACCTGAATCT--ATTCTTGCTCATCCCCCCTGGCTTAGTTAGTTCAAGCATT 291
Query 304 CTGAGACCGGTTCTGC 319
|||||||| ||||||
Sbjct 292 TTGAGACCGATTCTGC 307
Score = 128 bits (69), Expect = 2e-28
Identities = 89/98 (91%), Gaps = 4/98 (4%)
Strand=Plus/Plus
Query 1398 AAGTCTCAAGGTCTTGGATCTCTCTGAGAACCATCTTGATGGATCTCTCCCTTCATCTCT 1457
||| || |||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1683 AAGCCTTAAGGTCTTGGATCTCTCTGAGAACAATCTTGATGGATATCTCCCTTCATCTCT 1742
Query 1458 TGGGAATCTTACAAGCATGA-AAGAATCTCTCTCGAGC 1494
||||||||||||| |||||| || |||||| || ||||
Sbjct 1743 TGGGAATCTTACATGCATGATAA-AATCTC-CT-GAGC 1777
> AT3G03370.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana
protein match is: DegP protease 7 (TAIR:AT3G03380.1). |
chr3:797254-799148 REVERSE LENGTH=1171
Length=1171
Score = 237 bits (128), Expect = 3e-61
Identities = 171/190 (90%), Gaps = 10/190 (5%)
Strand=Plus/Minus
Query 1666 CTCTCATACAACGACCTCTCTAGATTGATCCCACAAAGTTTTGGAAATCTTGAGAAGGTA 1725
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 830 CTCTCATACAACGACATCTCTGGATTGATCCCACAAAGTTTTGGAAATCTTGAGAAGGTA 771
Query 1726 GAGATCTTAGACCTTTCACACAACAACCTCTCAGGCGAAATCCTGCAGACACTTTCCAAG 1785
|| | | |||||||||| ||||||||||||||||||| ||||| ||| ||||||
Sbjct 770 GA---C-----C-TTTCACACAATAACCTCTCAGGCGAAATCCCGCAGAAACTATCCAAG 720
Query 1786 CTCAGGGAGCTGAATGTATTGGAGTTGAGCAACAACAAACTTACAGGTAGAATCCCTGAG 1845
||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 719 CTCAGTGAGCTGAATGTAT-GGAGTTGAGCAACAACAAACTTATAGGTAGAATCCATGAG 661
Query 1846 AGTCCTCAGC 1855
||||||||||
Sbjct 660 AGTCCTCAGC 651
Score = 202 bits (109), Expect = 1e-50
Identities = 161/184 (88%), Gaps = 12/184 (7%)
Strand=Plus/Minus
Query 1398 AAGTCTCAAGGTCTTGGATCTCTCTGAGAACCATCTTGATGGATCTCTCCCTTCATCTCT 1457
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1007 AAGTCTCAAGGTCTTGGATCTCTCTGAGAACAATCTTGATGGATCTCTCCCTTCATCTCC 948
Query 1458 TGGGAATCTTACAAGCATGAAAGAATCTCTC-TCGAGCTCGTCTTCGCCTTTGCCTTTCA 1516
|||| | |||| ||||||||||||||||| | || || ||||||| ||||| |||||
Sbjct 947 TGGG-A---TACAGGCATGAAAGAATCTCTCGT-AAGTTCATCTTCGCTTTTGCGTTTCA 893
Query 1517 TGTACAGTTTCACTATCG--A-A-AT--CTTAGCAGTGAACTGGAAGAATTCAAAGCAAA 1570
| ||||| |||||||||| | | || |||||||||||||||||||||||||||||||
Sbjct 892 TATACAGCTTCACTATCGTAATACATAACTTAGCAGTGAACTGGAAGAATTCAAAGCAAG 833
Query 1571 GTCT 1574
||||
Sbjct 832 GTCT 829
> AT4G04221.1 | Symbols: | other RNA | chr4:2035159-2036370 REVERSE
LENGTH=613
Length=613
Score = 128 bits (69), Expect = 2e-28
Identities = 89/98 (91%), Gaps = 4/98 (4%)
Strand=Plus/Minus
Query 1398 AAGTCTCAAGGTCTTGGATCTCTCTGAGAACCATCTTGATGGATCTCTCCCTTCATCTCT 1457
||| || |||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 579 AAGCCTTAAGGTCTTGGATCTCTCTGAGAACAATCTTGATGGATATCTCCCTTCATCTCT 520
Query 1458 TGGGAATCTTACAAGCATGA-AAGAATCTCTCTCGAGC 1494
||||||||||||| |||||| || |||||| || ||||
Sbjct 519 TGGGAATCTTACATGCATGATAA-AATCTC-CT-GAGC 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99899084550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5