BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317222
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03405.1 | Symbols: | F-box associated ubiquitination effec... 403 9e-112
AT3G23680.1 | Symbols: | F-box associated ubiquitination effec... 150 1e-35
AT2G04730.1 | Symbols: | pseudogene, F-box protein-related, co... 106 3e-22
AT3G22421.1 | Symbols: | F-box and associated interaction doma... 104 1e-21
AT1G48625.1 | Symbols: | pseudogene of F-box family protein | ... 91.6 8e-18
AT3G25090.1 | Symbols: | F-box associated ubiquitination effec... 89.8 3e-17
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 52.8 4e-06
> AT3G03405.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:809875-810795 REVERSE LENGTH=582
Length=582
Score = 403 bits (218), Expect = 9e-112
Identities = 468/580 (81%), Gaps = 52/580 (9%)
Strand=Plus/Plus
Query 1 ATGACGACGATCTCAGATCTCCCGAAGGAATTGGTAAAGGAGATTATCTCTCGGGTTCCA 60
|||||||||||||||||||| || |||||||||||| |||||||||||||| |||||||
Sbjct 1 ATGACGACGATCTCAGATCTTCCAAAGGAATTGGTAGAGGAGATTATCTCTGGGGTTCCT 60
Query 61 ATGAAATCT-ATGAGAGCCGTTCGATTCACTTGCAAAAAATGGAACCACAATAATACTAG 119
| ||||| | ||||||| | | || | | | || | || ||||||||
Sbjct 61 ACGAAAT-TGATGAGAG-C---AG-TT--C--G------A-GG-A-GAC---AATACTAG 98
Query 120 GCTTGTGGTTTGGAATCCGTAT-TGCGGGCAAACAAGGTTGATCGAACTCAGGTATTCTT 178
|||||||||||||||||| ||| | ||||||||||| | | ||| | || |
Sbjct 99 GCTTGTGGTTTGGAATCCTTATAT-CGGGCAAACAA-G--G-TCG-A-TC----A----- 142
Query 179 ACATCTCCGTGAAGGAATGTGACACGTGCAGTTACGCTTTCGGATACGTGGAGAAGAAGA 238
| | || |||||||| ||| ||||||||||||||||||||||||| | |||||||||| |
Sbjct 143 A-A-CT-CGTGAAGGGATGGGACACGTGCAGTTACGCTTTCGGATGCTTGGAGAAGAATA 199
Query 239 ACAAATCTTGTCGTAACCACAAAATCTTGAGGTTTACAGATAATGACGGACGTTACAACG 298
| ||||||||||||| ||||||||||||||||||| |||| ||||| || ||||||||
Sbjct 200 AAAAATCTTGTCGTAGCCACAAAATCTTGAGGTTTTTAGATGATGACACACTTTACAACG 259
Query 299 AAAGAGACAACTTTATATGCAAATTCTTGACAGTAAATACGGGACCTGAAATTTTATTAA 358
|||||||||||||| || ||| ||||||| ||| ||||||||||||||| ||| ||||
Sbjct 260 GAAGAGACAACTTTAGATTCAAGTTCTTGAAAGTGAATACGGGACCTGAAGTTTCATTAG 319
Query 359 CAATTGAGAGTTTCATCATTGACGAGGAGAAGAAAGTCGCCTTGGTT--T--TGG--ATG 412
| |||||||||||||||||||||| ||||||||||||| | ||||| | || |
Sbjct 320 TACTTGAGAGTTTCATCATTGACGAAGAGAAGAAAGTCGTCATGGTTAGTGAGGGTTTTA 379
Query 413 ACCA-C--ACATTTTACATTCTTGGAGAGGCTGGATACTTAAGAGAATGGGATCTCGGAG 469
| || | | || |||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 380 AACACCGAATATCTTACATTCTTGGAGAGAATGGATACTTAAGAGAATTGGATCTAGGAG 439
Query 470 AACCTGCCCACAAAAAGTGTTCCACACAAATGTGCTCTTATGTTCCAAGTTTAGTGCAAA 529
|| || | ||| ||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 440 AATCTATCTACACAAACTGTTGGACACAAGCGTGCTCTTATGTTCCAAGTTTAGTGCAAC 499
Query 530 TCAAGCGACCAGCAGGAAGCAAAAAGAAACTACAAAGCAG 569
|||||| |||||||||| |||||| |||||||||||||||
Sbjct 500 TCAAGCAACCAGCAGGAGGCAAAAGGAAACTACAAAGCAG 539
Score = 65.8 bits (35), Expect = 5e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 602 TGAGACTTGTCGCACTTGATAAGCGAATCAAAAAGTAA 639
||||||||||||||||||||||||||||||| ||||||
Sbjct 545 TGAGACTTGTCGCACTTGATAAGCGAATCAATAAGTAA 582
> AT3G23680.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8526366-8527173 REVERSE LENGTH=708
Length=708
Score = 150 bits (81), Expect = 1e-35
Identities = 227/294 (77%), Gaps = 23/294 (8%)
Strand=Plus/Plus
Query 353 TATTA-ACAATTGAGAGTTTCATCATTGACGAGGAGAAGAAAGTCGCC-TTGGTTTTG-- 408
||||| | ||| || |||||| |||||||||||||||||||||||||| |||||||||
Sbjct 417 TATTATA-AATGGA-AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCATTGGTTTTGAA 474
Query 409 GAT--G-A---CCACACATTTTACATTC-TTGGAGAGGCTGGATACTTAAGAGAATGGGA 461
||| | | ||||||| || ||| || ||||||||||||||||||| || | || |||
Sbjct 475 GATGGGAATCGCCACACAATTAACA-TCATTGGAGAGGCTGGATACTTGAGGGCATTGGA 533
Query 462 TCTC---GGAGAACCTGCCCA-CAAAAAGTGTTCCACACAAATGTGCTCTTATGTTCCAA 517
|||| ||||| || | |||| | ||| ||| | ||||||||||||||||||
Sbjct 534 TCTCGTTGGAGATTATGGAGACCAAAGA-TGTAAGACAGATCTGTGCTCTTATGTTCCAA 592
Query 518 GTTTAGTGCAAATCAAGCGACCAGCAGGAAGCAAAAAGAAACTACAAAGC-AGTTTAGAA 576
|||||||||||||||||| ||| | |||| | ||| | || | ||||| | || ||
Sbjct 593 GTTTAGTGCAAATCAAGCAACCTGAAGGAGGGGAAAGGGAAGAAGAAAGCGAATTG-GAG 651
Query 577 AAGCGCCGATATGATCAAAAGAAATTGAGACTTGTCGCACTTGATAAGCGAATC 630
|||| ||||||||| |||| | | |||||||||| |||||| || ||||||
Sbjct 652 AAGCTTCGATATGATGAAAACATGTCGAGACTTGTCTTACTTGA-AA-CGAATC 703
> AT2G04730.1 | Symbols: | pseudogene, F-box protein-related,
contains TIGRFAM TIGR01640 : F-box protein interaction domain;
similar to F-box protein family, AtFBX9 (GI:20197985) (Arabidopsis
thaliana) | chr2:1654500-1655699 REVERSE LENGTH=1200
Length=1200
Score = 106 bits (57), Expect = 3e-22
Identities = 136/171 (80%), Gaps = 17/171 (10%)
Strand=Plus/Plus
Query 113 ATACTAGGCTTGTGGTTTGGAATCCGTATTGCGGGCAAACAAGGTTGATCGAACTCAGGT 172
||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||
Sbjct 348 ATACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCTAACAAGGTGGATCGAACCCAGGT 407
Query 173 ATTCTTACATCTCCGTGAA--GGAATGTGACACG-TGCAGTTACGCT-TTCGGATACGTG 228
|||| || | || | || ||| || | || | | |||||||||| || |||||||||
Sbjct 408 ATTCCCAC--CACC-T-AATCGGA-TGCG-CAAGGTTCAGTTACGCTCTT-GGATACGTG 460
Query 229 GAGAAGAAGAACAAATCTTGTCGTAACCACAAAATCTTGAGGTTTACAGAT 279
| | | | | | || ||||||| ||||||| | |||||||||| ||||
Sbjct 461 G-GTA-AT-ATC---TCATGTCGTAGCCACAAATTATTGAGGTTTATAGAT 505
> AT3G22421.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7949116-7950396 REVERSE LENGTH=1281
Length=1281
Score = 104 bits (56), Expect = 1e-21
Identities = 103/125 (82%), Gaps = 5/125 (4%)
Strand=Plus/Plus
Query 500 TGTGCTCTTATGTTCCAAGTTTAGTGCAAATCAAGCGACCAGCAGGAAGCAAAAAGAAAC 559
|||||||||||||||||||||||||||||||||||| ||| ||||| || ||| |||||
Sbjct 1103 TGTGCTCTTATGTTCCAAGTTTAGTGCAAATCAAGCAACCTCCAGGATGCCAAAGGAAAC 1162
Query 560 TACAAAGCAGTTTAGAAAAGCGCCGAT---ATGATCAAAAGAAAT-TGAGACTTGTCGCA 615
| |||||||| ||||||| || |||| ||||| |||| | || | |||||| | |||
Sbjct 1163 AAGAAAGCAGTCTAGAAAAACGTCGATGTGATGATGAAAACATATCT-AGACTTATTGCA 1221
Query 616 CTTGA 620
| |||
Sbjct 1222 CATGA 1226
> AT1G48625.1 | Symbols: | pseudogene of F-box family protein
| chr1:17979561-17980815 FORWARD LENGTH=1255
Length=1255
Score = 91.6 bits (49), Expect = 8e-18
Identities = 143/185 (77%), Gaps = 20/185 (11%)
Strand=Plus/Plus
Query 107 ACAA-TAATACTAGGCTTGTGGTTTGGAATCCGTATTGCGGGCAAACAAGGTTGATCGAA 165
|||| || |||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 362 ACAATTACTACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGCAGATCAAA 421
Query 166 -CTCAGGTATTCTTAC-A----T-CTCCGTGAAGGAAT-GT--G-ACACGTGCAGTTACG 214
| | | |||||| || | | ||||| ||||| || || | ||| || || ||||
Sbjct 422 ACCC-GATATTCTCACCACGCATTCTCCG-GAAGGGATAGTACGTACATGTTCAATTACT 479
Query 215 CTTTCGGATACGTGGAGAAGAAGAACAAATCTTGTCGTAACCACAAAATCTTGAGGTTTA 274
|| ||||||||| |||| ||||| || ||||| | ||||||| | ||||||||||
Sbjct 480 CTCTCGGATACG---AGAATAAGAAT---TCATGTCGCAGCCACAAATTATTGAGGTTTA 533
Query 275 CAGAT 279
||||
Sbjct 534 TAGAT 538
> AT3G25090.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:9140039-9141094 REVERSE LENGTH=978
Length=978
Score = 89.8 bits (48), Expect = 3e-17
Identities = 149/195 (76%), Gaps = 18/195 (9%)
Strand=Plus/Plus
Query 367 AGTTTCATCATTGACGAGGAGAAGAAAGTCGCCTT-GGTTTTG--GAT-G-A-CCAC-AC 419
|||||| |||||||||||||||||||||||||||| ||||||| || | | || | |
Sbjct 742 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCTTTGGTTTTGATGAACGTAACCGCCAG 801
Query 420 ATT-TTACAT-TC-TTGGAGAGGCTGGATACTTAAGAGAATGGGATCTCG--GAGAACCT 474
| ||| | || ||||||||||||||||||| || | || |||||||| | | | |
Sbjct 802 AGAGTTAT-TGTCATTGGAGAGGCTGGATACTTGAGGGGATTGGATCTCGTTGGGGATTT 860
Query 475 -GCCCACAAAAAG-TGTTC-CACACAAATGTGCTCTTATGTTCCAAGTTTAGTGCAAATC 531
| || ||| | ||| | || | | ||||||||||||||||||||||||||||||
Sbjct 861 TGGAGACCAAA-GCTGTAAGC-CAGATCTATGCTCTTATGTTCCAAGTTTAGTGCAAATC 918
Query 532 AAGCGACCAGCAGGA 546
|||| ||| | ||||
Sbjct 919 AAGCAACCTGAAGGA 933
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 500 TGTGCTCTTATGTTCCAAGTTTAGTGCA 527
||||||||||||||||||||||||||||
Sbjct 1103 TGTGCTCTTATGTTCCAAGTTTAGTGCA 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5