BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317230
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03480.1 | Symbols: CHAT | acetyl CoA:(Z)-3-hexen-1-ol acety... 2058 0.0
> AT3G03480.1 | Symbols: CHAT | acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase
| chr3:828296-829896 REVERSE LENGTH=1502
Length=1502
Score = 2058 bits (1114), Expect = 0.0
Identities = 1270/1348 (94%), Gaps = 0/1348 (0%)
Strand=Plus/Plus
Query 1 ATGGACCATCAAGTGTCTCTGCCACAATCTACCACCACTGGTCTCTCTTTCAAGGTGCAT 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 34 ATGGACCATCAAGTGTCTCTGCCACAATCTACCACCACTGGTCTTTCTTTCAAGGTGCAT 93
Query 61 CGCCAGCAGCCGGAGCTAATCACTCCGGCTAAACCAACTCCACGAGAGCTCAAGCCTCTC 120
|||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 94 CGCCAGCAGCGGGAGCTAGTCACTCCGGCTAAACCAACGCCACGAGAGCTCAAGCCTCTC 153
Query 121 TCCGACATAGATGACCAACAAGGACTAAGATTTCAAATTCCAGTTATATTTTTCTATAGA 180
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 154 TCCGACATAGACGACCAACAAGGACTAAGATTTCAAATTCCAGTTATTTTTTTCTATAGA 213
Query 181 CCTAACCTTTCAAGTGATCTCGATCCGGTCCAAGTGATAAAGAAAGCCCTCGCCGATGCG 240
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 214 CCTAACCTTTCAAGTGATCTTGATCCGGTCCAGGTGATAAAGAAAGCCCTCGCCGATGCG 273
Query 241 CTGGTTTACTACTATCCATTCGCTGGTAGGCTCCGGGAACTTTCAAACCGGAAACTCGCG 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 CTGGTTTACTACTATCCGTTCGCTGGTAGGCTCCGGGAACTTTCAAACCGGAAACTCGCG 333
Query 301 GTGGACTGCACCGGTGAAGGCGTTTTGTTCATCGAGGCTGAAGCTGACGTGTCGCTTACT 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 334 GTGGACTGCACCGGTGAAGGCGTTTTGTTCATCGAGGCTGAAGCTGACGTGGCGCTTGCT 393
Query 361 GAGTTGGAGGAGGCTGATGCTCTTCTTCCTCCGTTCCCTTGCCTAGAAGAGCTTCTCTTT 420
||| |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 394 GAGCTGGAAGAGGCTGATGCTCTTCTTCCTCCATTCCCTTTCCTAGAAGAGCTTCTCTTT 453
Query 421 GATGTGGAAGGCTCTAGTGATGTGCTTAACACTCCTCTCCTTCTCGTCCAGGTCACGCGC 480
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 454 GATGTGGAAGGCTCTAGTGATGTGCTTAACACTCCTCTGCTTCTCGTCCAGGTCACGCGA 513
Query 481 TTGAAATGCAGCGGATTTATCTTTGCCCTCCGCTTCAACCATACCATGACCGATGGAGCC 540
||||||||| | ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 514 TTGAAATGCTGTGGATTTATCTTCGCACTCCGCTTCAACCATACCATGACCGATGGAGCC 573
Query 541 GGCCTGTCGCTCTTTCTGAAATCACTATGCGAGTTGGCGTGTGGGCTTCACGTGCCCTCG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 574 GGCCTGTCGCTCTTTCTGAAATCACTATGCGAGTTGGCGTGTGGGCTTCACGCACCCTCG 633
Query 601 GTTCCACCAGTATGGGACCGACACTTGTTGACTGTGAGTGCTTCGGAGGCGCGTGTGACT 660
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GTTCCACCCGTATGGAACCGACACTTGTTGACTGTGAGTGCTTCGGAGGCGCGTGTGACC 693
Query 661 CACACACACCGTGAGTATGAAGAACAGGTGGCCATCGATGTGGTCGCCACTGGAGACCCT 720
||||||||||||||||| || || ||||||| ||||||||||||||||||||| |||||
Sbjct 694 CACACACACCGTGAGTACGATGATCAGGTGGGAATCGATGTGGTCGCCACTGGACACCCT 753
Query 721 TTGGTTAGCCGGTCTTTCTTTTTCAGGGCGGAGGAGATTTCCGCCATACGGAAACTTCTT 780
|||||||||||||||||||||||||| || || ||||| ||||| ||| ||||||| |||
Sbjct 754 TTGGTTAGCCGGTCTTTCTTTTTCAGAGCAGAAGAGATCTCCGCTATAAGGAAACTCCTT 813
Query 781 CCGCCCGATCTCCACAATACCTCATTTGAAGCCTTGTCGTCATTTTTGTGGCGTTGTAGG 840
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 814 CCGCCTGATCTACACAATACCTCATTTGAAGCTTTGTCGTCATTTTTGTGGCGTTGTCGG 873
Query 841 ACAATTGCGTTGAAACCTGATCCCAACACTGAGATGCGACTAACTTGTATCATCAACTCG 900
|| ||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 874 ACTATTGCGTTGAATCCTGACCCCAACACTGAGATGCGTCTAACTTGCATCATCAACTCG 933
Query 901 CGTTCCAAGCTTAGCAACCCACCACTATCGCCGGGTTACTACGGAAATGTGTTCGTCATT 960
|||||||||||||| |||||||| ||| ||| |||||||||||||||||||| ||||||
Sbjct 934 CGTTCCAAGCTTAGAAACCCACCGCTAGAGCCTGGTTACTACGGAAATGTGTTTGTCATT 993
Query 961 CCCGCGGCAATAGCAACAGCAAGAGATCTTATGGAGAAACCTCTTGAGTTTGCTTTGAGG 1020
|||||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 994 CCCGCGGCAATAGCGACAGCAAGAGATCTAATAGAGAAACCGCTTGAGTTTGCTTTGAGG 1053
Query 1021 TTGATACAAGAAACGAAGTCAAGTGTGACTGAGGACTACGTCCGCTCAGTGACTGCCCTA 1080
|||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||
Sbjct 1054 TTGATACAAGAAACGAAGTCAAGTGTAACCGAGGACTACGTCCGTTCAGTGACCGCCCTA 1113
Query 1081 ATGGCCACTAGAGGCCGGCCTATGTTTGTGGCAGCGGGGAACTACATCATATCGGATTTA 1140
||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||| ||
Sbjct 1114 ATGGCGACTAGAGGCCGGCCTATGTTTGTGGCATCAGGGAACTACATAATATCGGACTTG 1173
Query 1141 AGACACTTTGATTTAGGAAAAGTTGATTTTGGACCGTGGGGTAAGCCAGTGTACGGTGGA 1200
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1174 AGACATTTTGATTTAGGAAAAATTGATTTTGGACCGTGGGGTAAGCCAGTGTACGGTGGA 1233
Query 1201 ACCGCTAAGGCCGGTATCGCGCTTTTTCCAGGAGTGAGCTTCTACGTGCCGTTTAAGAAT 1260
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1234 ACCGCTAAGGCCGGTATCGCGCTTTTCCCGGGAGTGAGCTTCTACGTGCCGTTTAAGAAT 1293
Query 1261 AAAAAAGGTGAGACGGGTACCGTTGTGGCGATTAGCTTGCCGGTGCGGGCAATGGAGAGG 1320
|||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| |
Sbjct 1294 AAAAAAGGTGAGACAGGTACAGTTGTGGCGATTAGCTTGCCGGTACGGGCGATGGAGACG 1353
Query 1321 TTCGTAGCAGAGCTAAATGGAGTGTTAA 1348
|||||||||||||||||||||||| |||
Sbjct 1354 TTCGTAGCAGAGCTAAATGGAGTGCTAA 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5