BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317232
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03510.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2025 0.0
> AT3G03510.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:836039-837707 FORWARD LENGTH=1669
Length=1669
Score = 2025 bits (1096), Expect = 0.0
Identities = 1295/1387 (93%), Gaps = 29/1387 (2%)
Strand=Plus/Plus
Query 1 ATGGACATCAACCCGAGTATCTTCCACCTCGTGACTAGATTCTGCTATGGCTACAAAATC 60
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 302 ATGGACATCAACCCAAGTATCTTCCACCTCGTGACTAGATTCTGTTATGGATACAAAATC 361
Query 61 GATTTATCAGCTGACAACATCGTCTCTGTGCTCTGCATTGCTTATTACCTAGATATGAGC 120
|| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||
Sbjct 362 GAATTATCAGCTGACAATATCGTCTCTGTGTTATGCATTGCTTATTACCTAGAGATGAGC 421
Query 121 GATGATCATAGCTCTAACAACTTGTTGAACAAGGCAGTAACTTTCTTGGAACAACGAGTT 180
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 422 GATGATCATAGCTCTAACAACTTGTTGAACAAGGCAGTTACGTTCTTGGAACAACGAGTT 481
Query 181 CTCATGAGCTGTAATGAAACCGTGAAAGCTCTTCGTATCTGCAGCGATAAGATTCTGGAC 240
|| |||||||| | ||| ||||||||||||||| |||||||||||||||||||| |||||
Sbjct 482 CTTATGAGCTGGAGTGAGACCGTGAAAGCTCTTTGTATCTGCAGCGATAAGATTTTGGAC 541
Query 241 AAACTAGCTGATGTTGGACTCATCGAAGTTTTCTTAGATTCTCTTGTCGAAAAGGCTCTC 300
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 542 AAACTAGCTAATGTTGGACTCATCGAAGTTTTCTTAGATTCTCTTATCGAAAAGGCTCTC 601
Query 301 AACGATACTAGGTTGCTCCAAGATTTGATTACATTACCACTTCGGTTATATGAACCCTTG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 602 AACGATACTAGGTTGCTCCAAGATTTGATTACATTACCACTTCGGTTATATGAACCATTG 661
Query 361 ATTCTAG-AGTTGAGTAAGCACAATGTCTCGATAGAAAAATTTGTAGCATCGGTCTGCAA 419
||||||| || |||||||||||||||||||| ||||||| |||| || || ||||||||
Sbjct 662 ATTCTAGAAG-TGAGTAAGCACAATGTCTCGTTAGAAAACCTTGTGGCCTCTGTCTGCAA 720
Query 420 TTACGCAAAAAGATGGGTTTTCGAGAAAGA-T-----GACGGAAGCGTTTCAAGGAACAA 473
|||||| || |||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 721 TTACGCGAATAGATGGGTTTTCGAGAAAGATTCGGGAGACGGAAGCGTTTCAAGAAACAA 780
Query 474 GAGAGAAGTAATTGAAGCTGTTGAGAAGCTTTTGCCTCACGAAAGAGGAATAATCTCGTG 533
|||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 781 GAGAGAAGGAATTGAAGCTGTTGAGAGGCTTTTGCCTCACCAAAGAGGAACAATCTCGTC 840
Query 534 TGGATTTCTGTTCAAATCTCTGAAAGAATCGATTTTTCTTGATGCTTGCTCTGATTGCCG 593
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 TGGATTTCTGTTCAAATCGCTGAAAGAATCGATTTTTCTTGGTGCTTGCTCTGATTGCCG 900
Query 594 AAAAGGGTTTGAAGTTAGGATCAGTAACCAGCTCGACATGGCTAGAGCAAAAGATCTCCT 653
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 901 AAAAGGGTTTGAAGTTAGGATAAGTAACCAGCTTGACATGGCTAGAGCAAAAGATCTCCA 960
Query 654 GATTCTATCACCAACAGAAGATGGATCTTATGACATCGAGCTCTTGAAAACCATTCTCAA 713
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GATTCTGTCACCAACAGAAGATGGATCTTATGACATCGAGCTCTTGAAAACCATTCTCAA 1020
Query 714 GAGCTTCTATAGTAACTATAGTGTCTCGGATCTTTCGCGGTTTGTGAGTGTAGCGAGAAT 773
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1021 GAGCTTCTATAGTAACGATAGTGTCCCGGATCTTTCGCGGTTTGTGAGTGTAGCGAGAAT 1080
Query 774 GTTGGAAGAGTTTCTGTTGGAGGCTGCTGCGAGTGATGCTGATTTAAGGGTAGGAACATT 833
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 GTTGGAAGAGTTTCTGTTGGAGGCTGCTGCGAGTGATGCTGGTTTAAGGGTAGGAACATT 1140
Query 834 CAAGGAATTAGCAGAAATAGCGGTTGCTGCGTCTTGTGATGTGCTGAGTTACTCCGATGG 893
||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1141 CAAGGAACTAGCAGAAATTGCAGTTGCTGCGTCTTGTGATGTGCTGAGTTACTCTGATGG 1200
Query 894 AATATACAGAGCGATTGATGCTTT-CTTGGAGAGGCATAGAGATTTGATTGAATCGGAGA 952
|||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||
Sbjct 1201 AATATACAGAGCGATTGATG-TTTACTTGGAGAGGCATAGAGACTTGATTGAATCGGAGA 1259
Query 953 AGATGGAAGCTTGTAGATTTCTTGAATGTAAGAAACTTTCGCCCGAGGCTTGTGAACATG 1012
|||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||
Sbjct 1260 AGATGGAAGCTTGTAGGTTTCTTCATTGTAAGAAACTTTCACCCGAGGCTTGTGAACATG 1319
Query 1013 CTTCAAAGAACGAGAAGCTTCCATTGCGGATTGTTATGCAAGTTTTATTTGTTTCTCAGA 1072
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1320 CTTCAAAGAACGAGAAGCTTCCATTGAGGATTGTTATGCAAGTTTTGTTTGTTTCTCAGA 1379
Query 1073 TGCAGATTCGCGATAAGGTGGCTAGAGAAATGAAAGGTGTAGTAGAGGAGAAAACACAGG 1132
|||||||||| |||||||||||||||||||||||||||||||| ||| |||| || |
Sbjct 1380 TGCAGATTCGGGATAAGGTGGCTAGAGAAATGAAAGGTGTAGTGGAG-AGAA--CA--G- 1433
Query 1133 ATCAGGTACATGAAG-ATGATGAAGTGGAGAGTATGAGTAAGAAGTTGTTAAAGCTCGAG 1191
| | | || ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 A--A---A-ATCAAGTA-GATGAAGTGGAGAGTATGAGTAAGAAGTTGTTAAAGCTCGAG 1486
Query 1192 ATAGAACCTGATTATA-GCAAGAAAAGAAAGATTGAGAATCTTGAATGTGTTGTTTATTG 1250
|||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1487 ATAGAACCTGATTACATG-AAGAAAAGAAAGATTGAGAATCTTGAATGTGTTGTTCATTG 1545
Query 1251 CGAGAAGAAGAAGACAAGTGTGTGGAGAGAAGTAAAGAGGAAGTTTGGTTGTATGACTTC 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 CGAGAAGAAGAAGACAAGTGTGTGGAGAGAAGTAAAGAGGAAGTTTGGTTGTATGACTTC 1605
Query 1311 TTCTACCATGGATGCTTGCAATTGTCATTTCAAGAAGAGGAAGAAGACTTACCATCTCTA 1370
|||||||||||||||||||| ||||||| ||||||||||||||| |||| ||| |||
Sbjct 1606 TTCTACCATGGATGCTTGCAGTTGTCATATCAAGAAGAGGAAGA---CTTATCATAGCTA 1662
Query 1371 CAAATAA 1377
|||||||
Sbjct 1663 CAAATAA 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5