BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317234
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03530.1 | Symbols: NPC4 | non-specific phospholipase C4 | c... 2543 0.0
AT3G03540.1 | Symbols: NPC5 | non-specific phospholipase C5 | c... 1786 0.0
> AT3G03530.1 | Symbols: NPC4 | non-specific phospholipase C4 |
chr3:842499-845043 REVERSE LENGTH=1877
Length=1877
Score = 2543 bits (1377), Expect = 0.0
Identities = 1541/1621 (95%), Gaps = 8/1621 (0%)
Strand=Plus/Plus
Query 1 ATGAGCGAGACGACGAAAGGC---TCAGGATCGTATCCGATCAAAACCGTCGTCGTTTTG 57
|||| ||||||||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct 74 ATGATCGAGACGACCAAAGGCGGTTCAGGATCGTATCCGATCAAAACCATCGTCGTTTTG 133
Query 58 GTTCAAGAAAATCGTTCTTTCGACCATGCCCTAGGCTGGTTTAAAGAACTAAACCGGGAA 117
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 134 GTTCAAGAAAATCGTTCTTTTGACCACACCCTAGGCTGGTTTAAAGAACTAAACCGGGAA 193
Query 118 ATCGATGGCGTCACGAAGTCCGATCCCAAATCCAACACGGTTTCGTCCTCCGACACAAAC 177
||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 194 ATCGACGGCGTCACGAAATCTGATCCCAAATCCAACACGGTTTCGTCATCCGACACAAAC 253
Query 178 TCTCTTCGTGTCGTCTTCGGGGACCAGTCTCAGTACGTTGACCCGGATCCAGGTCACTCC 237
||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 254 TCTCTTCGTGTAGTCTTCGGGGATCAGTCTCAGTACGTTAACCCGGATCCAGGTCACTCC 313
Query 238 ATTCAGGATATCTACGAACAAGTGTTTGGTAAGCCATGGGATTCAGGTAAACCGGATCCT 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 ATTCAGGATATCTACGAACAAGTGTTTGGTAAGCCATGGGATTCAGGTAAACCGGATCCA 373
Query 298 AACCCGGGTCCAGC-TACCATGTCCGGTTTTGCTCAAAACGCCGAGAGAAACAAGAAAGG 356
|||||||||| | | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 AACCCGGGTC-ATCCTAACATGTCCGGTTTTGCTCAAAACGCCGAGAGAAACAAGAAAGG 432
Query 357 GATGTCCTCTGCGGTTATGAACGGATTTAAACCGAACGCTTTGCCGGTTTACAAAGAGTT 416
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 433 GATGTCCTCCGCGGTTATGAACGGATTTAAACCGAATGCTTTGCCGGTTTACAAGGAGTT 492
Query 417 GGTTCAAAATTTCGCCATATGTGACAGGTGGTTTGCGTCGGTTCCAGCGTCGACGCAGCC 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 493 GGTTCAAAATTTCGCCATATGTGATAGGTGGTTTGCGTCGGTTCCAGCGTCGACGCAGCC 552
Query 477 AAATCGATTGTACGTACACTCAGCAACATCACATGGAGCAACGAGCAACGACAAGAAATT 536
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 553 AAACCGATTGTACGTACACTCGGCAACATCACATGGAGCAACGAGCAACGACAAGAAATT 612
Query 537 GCTAATCGAAGGGTTTCCACAGAAGACGATATTCGAGTCTCTCCATGAAGCTGGTTTTAG 596
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 613 GCTACTCGAAGGGTTTCCACAGAAGACGATATTCGAGTCTCTCGATGAAGCTGGTTTTAG 672
Query 597 CTTTGGCATTTACTACCAATTCCCTCCTTCTACTCTCTTTTATAGGAATTTGAGAAAGCT 656
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 673 CTTTGGCATTTACTACCAATTCCCTCCTTCCACTCTCTTTTATAGGAATTTGAGAAAGCT 732
Query 657 GAAATATTTGACACATTTCCACCAATACGGTATACAATTCAAGAAAGATTGCAAAGAAGG 716
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 733 GAAATATTTGACACATTTCCACCAATACGGAATACAATTCAAGAAAGATTGCAAAGAAGG 792
Query 717 GAAGCTACCGAACTACGTCGTGATCGAACAACGTTGGTTTGATCTATTGTCAATTCCGGC 776
|||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||
Sbjct 793 AAAGCTACCCAACTACGTCGTGGTCGAACAACGTTGGTTTGATCTATTGTCAACTCCAGC 852
Query 777 CAATGACGATCACCCCTCTCACGACGTTTCCGAAGGTCAAAAGCTCGTGAAAGAGGTCTA 836
||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 853 CAATGACGATCACCCTTCTCACGATGTCTCCGAGGGTCAAAAGCTCGTGAAAGAGGTCTA 912
Query 837 CGAGGCATTGAGATCGAGTCCTCAATGGAACGAGATTTTATTCGTTATAACGTATGACGA 896
|||||||||||||||||||||||||||||| ||||||||||| | |||||||| |||||
Sbjct 913 CGAGGCATTGAGATCGAGTCCTCAATGGAATGAGATTTTATTTATCATAACGTACGACGA 972
Query 897 GCATGGTGGATTTTACGACCATGTACCTACTCCGGTCGACGGAGTTCCTAATCCAGATGG 956
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 973 GCATGGTGGATTTTACGACCATGTACCTACTCCAGTCGACGGAGTTCCTAATCCGGATGG 1032
Query 957 TATTTTGGGACCTCCACCGTATAATTTTGAGTTTAACCGGCTCGGAGTTAGGGTTCCGAC 1016
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1033 TATCTTGGGACCTCCACCATATAATTTTGAGTTTAACCGGCTCGGTGTTAGGGTTCCGAC 1092
Query 1017 TTTCTTCATCTCTCCTTGGATTGAGCCTGGGACAGTTCTTCATGGGCCAAATGGACCGTT 1076
|||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 1093 TTTCTTCATCTCTCCTTGGATTGAGCCTGGCACAGTTATTCATGGGCCAAATGGGCCGTA 1152
Query 1077 CGCAAGGTCACAATATGAGCATTCGTCAATTCCCGCAACGGTCAAGAAAATTTTCAAACT 1136
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1153 CCCAAGGTCACAATATGAGCATTCGTCAATTCCCGCAACGGTCAAGACAATTTTCAAACT 1212
Query 1137 CAAAGATTTCTTGACAAAGAGAGATTCATGGGCTGGTACTTTTGAATCTGTTATTGCGAG 1196
||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1213 CAAAGATTTCTTGTCAAAGAGAGATTCATGGGCTGGCACTTTTGAATCTGTTATTACGAG 1272
Query 1197 AGACTCACCAAGACAAGATTGCCCTGAAACATTATCAACTCCGGTTAAACTAAGAGGGAC 1256
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1273 AGACTCACCAAGACAAGATTGCCCTGAAACATTATCAACTCCGATTAAACTAAGAGGGAC 1332
Query 1257 ATTGGCAAAAGAAAATGCACAATTAAGCGACTTTCAAGAAGAGCTCGTAATAATGGCTGC 1316
| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1333 AATGGCAAAAGAAAATGCACAATTAAGCGAATTTCAAGAAGATCTCGTTATAATGGCTGC 1392
Query 1317 AGGATTAAAAGGAGACTACAAAAACGAAGAATTAATCCACAAGCTATGTAAAGAAACTTG 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 GGGATTAAAAGGAGACTACAAAAACGAAGAATTAATCCACAAGCTATGTAAAGAAACTTG 1452
Query 1377 CGTTGCAGATGCTTCCAAATATGTTACAAATGCGTTTGAGAAGTTTCTAGAAGAGTCAAG 1436
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1453 CGTTGCAGATGCATCCAAATACGTTACAAATGCGTTTGAGAAGTTTCTGGAAGAGTCAAG 1512
Query 1437 AAAGGCAAAAGATAGAGGATGTGATGAGAACGACATCATTTATTGCGTCGATGATGATCA 1496
|||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| |
Sbjct 1513 AAAGGCAAGAGATAGAGGATGTGATGAGAACGACATCGTTTATTGCGTTGATGATGATGA 1572
Query 1497 TCATCATCATGTTGTGATACCACCACAATCACATTCAGAAGCATCAAATGCTGCTCCTCA 1556
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1573 TGATCAT---GTTGTGATACCACCACAATCACATTCAGAAGCATCAAATGCTGCTGCTCA 1629
Query 1557 ACCGAAAACGCAAACGTCTTTTTTCAATAAGTTATTCTCTTGCTTTGTTTGCCATGATTG 1616
||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1630 ACCAAAAACGCAAACGTCTTTTTTCAATAAGTTATTCTCTTGCTTTATTCGCCATGATTG 1689
Query 1617 A 1617
|
Sbjct 1690 A 1690
> AT3G03540.1 | Symbols: NPC5 | non-specific phospholipase C5 |
chr3:846350-848297 REVERSE LENGTH=1566
Length=1566
Score = 1786 bits (967), Expect = 0.0
Identities = 1367/1561 (88%), Gaps = 24/1561 (2%)
Strand=Plus/Plus
Query 6 CGAGACGACGAAAGGCTCAGGATCGTATCCGATCAAAACCGTCGTCGTTTTGGTTCAAGA 65
|||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 6 CGAGACGAAAAAAGGCTCAGAATCGTATCCGATCAAAACCATCGTCGTTTTGGTTCAAGA 65
Query 66 AAATCGTTCTTTCGACCATGCCCTAGGCTGGTTTAAAGAACTAAACCGGGAAATCGATGG 125
||||||||||||||||| | || |||||||| ||||| |||||||||||||| || ||
Sbjct 66 GAATCGTTCTTTCGACCACACACTTGGCTGGTTCAAAGAGCTAAACCGGGAAATTGACGG 125
Query 126 CGTCACGAAGTCCGATCC-CAAATCCAACAC-GGTTTCGTCCTCCGACAC-AAACTCTCT 182
|||| ||| || || || |||| |||| | ||||| ||||| ||| | ||| || |
Sbjct 126 AGTCATGAAATCGGA-CCAGAAATTCAACCCGGGTTT-TTCCTCTGAC-CTAAATTC-CC 181
Query 183 TC-GTGTCGTCTTCGGGGACCAGTCTCAGTACGTTGACCCGGATCCAGGTCACTCCATTC 241
| |||||||| || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 182 ACAACGTCGTCTTTGGCGACCAGTCTCAGTACGTTGACCCGAATCCAGGTCACTCCATTC 241
Query 242 AGGATATCTACGAACAAGTGTTTGGTAAGCCATGGGATTCAGGTAAACCGGATCCTAACC 301
|||||| |||||||||||||| ||||| ||||||||||| ||| | ||||| || ||||
Sbjct 242 GGGATATTTACGAACAAGTGTTCGGTAAACCATGGGATTCGGGTCACCCGGACCCAAACC 301
Query 302 CGGGTCCAGCTACCATGTCCGGTTTTGCTCAAAACGCCGAGAGAAACAAGAAAGGGATGT 361
||||||||||||| |||||||| ||||| |||||||||||| |||| | |||||||||||
Sbjct 302 CGGGTCCAGCTACAATGTCCGGATTTGCCCAAAACGCCGAGCGAAAGATGAAAGGGATGT 361
Query 362 CCTCTGCGGTTATGAACGGATTTAAACCGAACGCTTTGCCGGTTTACAAAGAGTTGGTTC 421
| ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||
Sbjct 362 CTTCTGCGGTTATGAACGGATTTAAACCGGACGCTTTGCCGGTTTACAAGGAATTGGTTC 421
Query 422 AAAATTTCGCCATATGTGACAGGTGGTTTGCGTCGGTTCCAGCGT-CGACGCAGCCAAAT 480
|||||||||| |||||||| |||||||||||||||||||| | || | || ||||||||
Sbjct 422 AAAATTTCGCTATATGTGATAGGTGGTTTGCGTCGGTTCC-GGGTGCAACACAGCCAAAC 480
Query 481 CGATTGTACGTACACTCAGCAACATCACATGGAGCAACGAGCAACGACAAGAAATTGCTA 540
||||||| |||| || ||||||||||| ||| |||||| |||||| | |||||| ||
Sbjct 481 CGATTGTTTATACATTCGGCAACATCACACGGAACAACGAACAACGAGAGGAAATTACTG 540
Query 541 ATCGAAGGGTTTCCACAGAAGACGATATTCGAGTCTCTCCATGAAGCTGGTTTTAGCTTT 600
|||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||| ||||
Sbjct 541 ATCGAAGGTTTTCCACAAAAGACGATATTCGAGTCACTCGATGAAGCTGGTTTTACCTTT 600
Query 601 GGCATTTACTACCAAT-TCCCTCCTTCTACTCTCTTTTATAGGAATTTGAGAAAGCTGAA 659
|| ||||| ||||||| | |||| |||||||||||||||||||||||||||| || ||
Sbjct 601 GGGATTTATTACCAATGT-TTTCCTACTACTCTCTTTTATAGGAATTTGAGAAAACTCAA 659
Query 660 ATATTTGACACATTTCCACCAATACGGTA-TACAATTCAAGAAAGATTGCAAAGAAGGGA 718
|||||||||| ||||||| | ||||| | ||||||||||||||||||| ||||||||||
Sbjct 660 GTATTTGACACGTTTCCACGACTACGG-ACTACAATTCAAGAAAGATTGTAAAGAAGGGA 718
Query 719 AGCTACCGAACTACGTCGTGATCGAACAACGTTGGTTTGATCTATTG-TCAATTCCGGCC 777
| ||||||||||| || ||| | ||||||||||||| |||||||||| | || ||| ||
Sbjct 719 ATCTACCGAACTATGTTGTGGTTGAACAACGTTGGTATGATCTATTGTTGAA-TCCCGCT 777
Query 778 AATGACGATCACCCCTCTCACGACGTTTCCGAAGGTCAAAAGCTCGTGAAAGAGGTCTAC 837
|| || ||||| || || || ||||| |||||||| ||||||||||||||||| || |||
Sbjct 778 AACGATGATCATCCATCACATGACGTCTCCGAAGGCCAAAAGCTCGTGAAAGAAGTTTAC 837
Query 838 GAGGCATTGAGATCGAGTCCTCAATGGAACGAGATTTTATTCGTTATAACGTATGACGAG 897
||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 838 GAGGCCTTGAGATCGAGTCCTCAATGGAATGAGATTTTATTCATTATAACATATGACGAA 897
Query 898 CATGGTGGATTTTACGACCATGTACCTACTCCGGTCGACGGAGTTCCTAATCCAGATGGT 957
|| |||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 898 CACGGTGGATTCTACGACCATGTCCCTACTCCCCTCGACGGAGTTCCTAATCCGGATGGT 957
Query 958 ATTTTGGGACCTCCACCGTATAATTTTGAGTTTAACCGGCTCGGAGTTAGGGTTCCGACT 1017
|| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 958 ATCTTGGGACCTCCACCGTACAATTTTGAATTTAACCGGCTCGGCGTTAGGGTTCCGACT 1017
Query 1018 TTCTTCATCTCTCCTTGGATTGAGCCTGGGACAGTTCTTCATGGGCCAAATGGACCGTTC 1077
||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||| |
Sbjct 1018 TTCTTCATCTCCCCTTGGATTGAGCCTGGCACAGTTCTTCATGGGTCAAATGGGCCGTAC 1077
Query 1078 GC-AAGGTCACAATATGAGCATTCGTCAATTCCCGCAACGGTCAAGAAAATTTTCAAACT 1136
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 -CTAATGTCACAATATGAGCATTCGTCAATTCCCGCAACGGTCAAGAAAATTTTCAAACT 1136
Query 1137 CAAAGATTTCTTGACAAAGAGAGATTCATGGGCTGGTACTTTTGAATCTGTTATTGCGAG 1196
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 1137 CAAAGATTTTTTGACAAAGAGAGATTCGTGGGCTGGCACTTTTGAATCTGTTATTACGAG 1196
Query 1197 AGACTCACCAAGACAAGATTGCCCTGAAACATTATCAACTCCGGTTAAACTAAGAGGGAC 1256
| ||||||||||||||||||||||||||||||| |||| |||||| ||| | ||||||||
Sbjct 1197 AAACTCACCAAGACAAGATTGCCCTGAAACATTGTCAAATCCGGTCAAAATGAGAGGGAC 1256
Query 1257 ATTGGCAAAAGAAAATGCACAATTAAGCGACTTTCAAGAAGAGCTCGTAATAATGGCTGC 1316
||||||||||||||||| |||| |||||||||||||||||||| |||||| | |||||
Sbjct 1257 GGTGGCAAAAGAAAATGCAGAATTGAGCGACTTTCAAGAAGAGCTTGTAATAGTTGCTGC 1316
Query 1317 AGGATTAAAAGGAGACTACAAAAACGAAGAATTAATCCACAAGCTATGTAAAGAAACTTG 1376
|| ||||||||||||||||||||||||||||| | |||| ||||| ||| |||||||
Sbjct 1317 GGGTTTAAAAGGAGACTACAAAAACGAAGAATTGCTATACAAACTATGCAAAAAAACTTG 1376
Query 1377 CGTTGCAGATGCTTCCAAATATGTTAC-AAATGCGTTTGAGAAGTTTCTAGAAGAGTC-A 1434
|||| |||||||||| ||||| ||||| ||| |||||||| |||||| |||||||||| |
Sbjct 1377 CGTTTCAGATGCTTCTAAATACGTTACGAAA-GCGTTTGATAAGTTTGTAGAAGAGTCTA 1435
Query 1435 AGAAAGGCAAAAGATAGAGGATGTGATGAGAACGACATCATTTATTGCGTCGATGATGAT 1494
| |||||||| ||| || ||| ||||||||||||||||| ||| |||||| |||||||||
Sbjct 1436 A-AAAGGCAAGAGAAAGGGGAGGTGATGAGAACGACATCGTTTTTTGCGTTGATGATGAT 1494
Query 1495 CATCATCATCATGTTGTGATACCACCACAATCACATTCAGAAGC-ATCAAATGCTGCTCC 1553
|| ||||| ||||||||| |||||||| |||||| ||||| || |||| ||||| ||||
Sbjct 1495 GATGATCATAATGTTGTGAAACCACCACCATCACAATCAGA-GCCATCACATGCTACTCC 1553
Query 1554 T 1554
|
Sbjct 1554 T 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5