BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317250
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03690.1 | Symbols: UNE7 | Core-2/I-branching beta-1,6-N-ace... 1812 0.0
> AT3G03690.1 | Symbols: UNE7 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr3:911238-913677
REVERSE LENGTH=1427
Length=1427
Score = 1812 bits (981), Expect = 0.0
Identities = 1088/1140 (95%), Gaps = 6/1140 (1%)
Strand=Plus/Plus
Query 1 ATGGCTATAAAGAAACTGTTGATGAtctccttctctcttacttcactcctcttctctctt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35 ATGGCGATAAAGAAACTGTTGATGATCTCCTTCTCTCTTACTTCACTCCTCTTCTCTCTT 94
Query 61 ctctACATCATCCCCACAACTAAAACTTTATTCACTCCCTCAAAAATCCCTACTTTACCA 120
||||||||||||||||| || || ||| |||||||| |||||||||||||| |||||||
Sbjct 95 CTCTACATCATCCCCACGACCAAGACTCTATTCACTTCCTCAAAAATCCCTTCTTTACCC 154
Query 121 CTCGAATCCAACCAAAAC-CACAACTCTACCCTCCCCTGTTTCGCTTACCTAATCTCTGC 179
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 155 CTCGAATCCAACCAAAACTC-CAACTCTACCCTCCCCTGTTTTGCTTACCTAATCTCTGC 213
Query 180 ATCCAAAGGCGACGCCGGAAAACTCAAACGCCTCCTCCGATCTCTCTACCACCGCAGAAA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 214 ATCCAAAGGCGACGCCGGAAAACTCAAACGCCTCCTCCGATCTCTCTACCACCGTAGAAA 273
Query 240 CCACTATTTGATCCATCTAGACTTGGAGGCGCCCGAGGAAGAGCATTTGGAGATGGCCA- 298
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 274 CCATTATTTGATCCATCTAGACTTGGAGGCACCCGAGGAAGAGCATTTGGAGAT-GATAC 332
Query 299 GGTTTGTAGCCGGAGAACCTCTGTTTCAGCCGGAGGGTAATGTAATGATCGTCGGAAAAC 358
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 333 GGTTCGTAGCCGGAGAGCCTCTGTTTCAGCCGGAAGGTAATGTAATGATCGTTGGAAAAC 392
Query 359 CGAATCTGGTGACATATAGAGGACCAACGATGCTTGCGACGACGCTACACGCAATGGCTT 418
||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 393 CGAATCTGGTGACTTACAGAGGACCAACGATGCTTGCGACGACGTTACACGCAATGGCTT 452
Query 419 TGCTCTTGAGATGTTGTCGGTGGGATTGGTTCATTAATCTTAGTGCTTCTGATTATCCTC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TGCTCTTGAGATGTTGTCGGTGGGATTGGTTCATTAATCTTAGTGCTTCTGATTATCCTC 512
Query 479 TCCTCACACAAGACGATCTGATCTATGCATTTTCTGAGTTGCCTAGAGATCTCAACTTCA 538
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TCGTCACACAAGACGATCTGATCTATGCATTTTCTGAGTTGCCTAGAGATCTCAACTTCA 572
Query 539 TACAGCACACAAGCCGATTAGGATGGAAAATGAACAAAAGAGGGAAACCAATAATAATAG 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TACAGCACACGAGCCGATTAGGATGGAAAATGAACAAAAGAGGGAAACCAATAATAATAG 632
Query 599 ATCCAGGACTATATAGCCTCAACAAATCAGAGATTTGGTGGGTTAGTAATCAGCGAAGCC 658
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 ATCCAGGGCTTTATAGCCTCAACAAATCAGAGATTTGGTGGGTTAGTAATCAGCGAAGCC 692
Query 659 TCCCTACTTCTTTCAAGCTCTTCACAGGTTCTGCTTGGACATTCCTATCGAGACCGTTCT 718
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 693 TCCCTACTTCTTTCAAGCTCTTCACAGGTTCTGCTTGGACATTCCTATCAAGACCGTTCG 752
Query 719 CAGAATATTGTATAATAGGTTATGATAACTTACCAAGAACACTCCTTCTCTACTACACAA 778
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 753 CAGAATATTGTATAATAGGTTATGACAACTTACCAAGAACACTGCTTCTCTACTACACAA 812
Query 779 ACTTTGTTTCATCCCCGGAAGGCTATTTTCAGACACTTATATGCAACTCGGATGAGTTCA 838
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 813 ACTTCGTTTCATCCCCGGAAGGCTATTTTCAGACGCTTATATGCAACTCGGATGAGTTCA 872
Query 839 AGAGCACGACCGTGAACCACGACCTCCACTACATCGCGTGGGACAATCCGCCAAAGCAGC 898
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 873 AGAACACGACCGTGAACCACGACCTCCATTACATCGCGTGGGACAATCCGCCAAAGCAGC 932
Query 899 ACCCAAAGATTTTAGGGACCAGGGATTACAGAAAGATGGTAACGAGCAACCGACCATTCG 958
|||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 933 ACCCCAAGATATTAGGGACAAGGGATTACAGAAAGATGGTAATGAGCAACCGACCATTCG 992
Query 959 CAAGGAAGTTCAAGAGCAATGACCCCGTCCTCAATAGGATAGACCGGGAGATTCTGAGAA 1018
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 993 CTAGGAAGTTCAAGAGCAATGACCCCGTTCTCAATAGGATAGACCGGGAGATTCTGAGAA 1052
Query 1019 G-AACACGGAAACGTGGGTCGAAACCAGATCTCGGTCCTGGTCCGGGGGCTAGGAGGTTA 1077
| || |||||||| |||||||||||| ||||| |||||||||||||||||||| || ||
Sbjct 1053 GGAA-ACGGAAACTTGGGTCGAAACCCGATCTTGGTCCTGGTCCGGGGGCTAGAAGATTG 1111
Query 1078 AAGAGTTTACTAATGAGGCTTTTGTTGAGAAGAAACTTTGTCAATAGGCAATGTAGATAG 1137
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1112 AAGAGTTTACTAATGAGGCTTTTGTTGAGAAGAAACTTTGTCAATAGACAATGTAGATAG 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5