BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317260
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03800.1 | Symbols: SYP131, ATSYP131 | syntaxin of plants 13... 1607 0.0
> AT3G03800.1 | Symbols: SYP131, ATSYP131 | syntaxin of plants
131 | chr3:969107-971460 FORWARD LENGTH=1035
Length=1035
Score = 1607 bits (870), Expect = 0.0
Identities = 904/921 (98%), Gaps = 0/921 (0%)
Strand=Plus/Plus
Query 1 ATGAACGACCTCTTAAAGGGTTCGTTAGAGTTCTCCAGGGATCGCTCTAATAGAAGCGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 ATGAACGACCTCTTAAAGGGTTCGTTAGAGTTCTCCAGGGATCGCTCTAATAGAAGCGAT 174
Query 61 CTTGAGTCAGGACATGGCCCAGGTAACTCTGGAGATCTCGGGCTCTCTGGTTTCTTCAAA 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 175 ATTGAGTCAGGACATGGCCCTGGTAACTCTGGAGATCTCGGGCTCTCTGGTTTCTTCAAA 234
Query 121 AAGGTCCAAGAAATCGAAAAGCAATATGAGAAGCTTGATAAGCATCTCAACAAGCTTCAG 180
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 235 AAGGTCCAGGAAATCGAAAAGCAATATGAGAAGCTTGACAAGCATCTCAACAAGCTTCAG 294
Query 181 GGGGCACATGAGGAGACTAAAGCCGTCACTAAGGCTCCTGCGATGAAATCAATCAAACAG 240
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 295 GGGGCACATGAGGAGACTAAAGCCGTCACCAAGGCTCCTGCAATGAAATCAATCAAGCAA 354
Query 241 AGGATGGAGAGAGATGTTGATGAAGTGGGAAGAATTTCTCGTTTCATCAAAGGAAAGATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGGATGGAGAGAGATGTTGATGAAGTGGGAAGAATTTCTCGTTTCATCAAAGGAAAGATC 414
Query 301 GAGGAACTGGACCGAGAGAATCTGGAGAACCGGACTAAACCGGGTTGTGGGAAAGGAACA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAGGAACTGGACCGAGAGAATCTGGAGAACCGGACTAAACCGGGTTGTGGGAAAGGAACA 474
Query 361 GGTGTAGACAGAACAAGAACAGCCACAACTATTGCGGTGAAGAAGAAATTTAAGGACAAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GGTGTAGACAGAACAAGAACAGCCACAACTATTGCGGTGAAGAAGAAATTTAAGGACAAG 534
Query 421 ATATCTGAATTCCAAACTCTAAGACAGAACATTCAACAAGAATACAGAGAAGTTGTAGAG 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 535 ATATCTGAATTCCAAACTCTAAGACAAAACATTCAACAAGAATACAGAGAAGTTGTAGAG 594
Query 481 AGGCGTGTGTTTACAGTGACTGGCCAACGAGCTGATGAAGAGGCAATTGATAGATTGATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AGGCGTGTGTTTACAGTGACTGGCCAACGAGCTGATGAAGAGGCAATTGATAGATTGATT 654
Query 541 GAAACTGGAGACAGTGAGCAAATTTTCCAGAAAGCAATCAGGGAGCAAGGACGAGGACAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAAACTGGAGACAGTGAGCAAATTTTCCAGAAAGCAATCAGGGAGCAAGGACGAGGACAG 714
Query 601 ATAATGGATACACTGGCTGAGATACAGGAACGCCATGACGCTGTCAGAGATTTAGAGAAG 660
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 715 ATAATGGACACACTGGCTGAGATTCAGGAACGCCATGACGCTGTCAGAGATTTAGAGAAG 774
Query 661 AAACTCCTTGACCTGCAACAGGTGTTTCTCGATATGGCCGTGCTGGTGGATGCACAGGGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAACTCCTTGACCTGCAACAGGTGTTTCTCGATATGGCCGTGCTGGTGGATGCACAGGGA 834
Query 721 GAGATGTTAGACAACATAGAGAATATGGTCTCAAGTGCTGTGGATCATGTTCAATCTGGA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 835 GAGATGTTAGACAACATAGAGAATATGGTCTCAAGTGCTGTGGATCATGTTCAATCCGGA 894
Query 781 AACAATCACCTAACAAAGGCAGTAAAAAGCCAGAAAAGTTCAAGGAAATGGATGTGCATT 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AACAATCAACTAACAAAGGCAGTAAAAAGCCAGAAAAGTTCAAGGAAATGGATGTGCATT 954
Query 841 GCCATCCTTATCCTACTTATCATCATCATCATTACTGTTATCTCTGTTCTCAAACCATGG 900
|||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 955 GCCATCCTTATCCTTCTTATCATTATTATCATTACTGTCATCTCTGTTCTCAAACCATGG 1014
Query 901 ACACAGAAAAATGGTGCCTAA 921
|||||||||||||||||||||
Sbjct 1015 ACACAGAAAAATGGTGCCTAA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5