BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg317262

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03828.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   300    4e-81


> AT3G03828.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G43695.1); Has 
30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr3:979379-979900 FORWARD LENGTH=431
Length=431

 Score =  300 bits (162),  Expect = 4e-81
 Identities = 222/249 (89%), Gaps = 12/249 (5%)
 Strand=Plus/Plus

Query  3    GGTG-AAGATGTCAATGAAGTTTGTTTTCGTTCTTTTCTTAGCTGTTACATCAGTGATGA  61
            |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  67   GGTGAAAAATGTCAATGAAGTTTGTTTTCGTTCTGTTCTTAGCTGTTACATCAGTGATGA  126

Query  62   ATATTGGAACAGTTCAAAATGTTGAAGGGAAACGTTTATTACCTGAAGAAACTTCTCAAT  121
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  127  ATATTGTAACAGTTCAAAATGTTGAAGGGAAACGTTTATTACCTGAAGAAACTTCTCAAT  186

Query  122  T-T--GTGTTGGATCATGAAGCTTCACCATC-GTTTGTCATACCACAAGG--AATCCACT  175
            | |  |||||||||||||||||||||||||| ||| ||||||||||||||  || | | |
Sbjct  187  TATCTGTGTTGGATCATGAAGCTTCACCATCAGTT-GTCATACCACAAGGTCAA-CAA-T  243

Query  176  GCGAGAAAAAGTGTCATGTCCAATGTTATATTCGCGAGAG-GGCGTATGGTTGTGTTTGT  234
            ||  ||||  ||||||||| ||||||||| |||||||||  || || |  ||||||||||
Sbjct  244  GCCCGAAACCGTGTCATGTGCAATGTTATTTTCGCGAGATCGG-GTCTTTTTGTGTTTGT  302

Query  235  TTATGCTAA  243
             ||||||||
Sbjct  303  CTATGCTAA  311



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5