BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317277
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04000.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1236 0.0
AT3G03980.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 231 6e-60
> AT3G04000.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:1035500-1036672 FORWARD LENGTH=1056
Length=1056
Score = 1236 bits (669), Expect = 0.0
Identities = 776/827 (94%), Gaps = 10/827 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGCAGCGTCATCAGTTTCTTCTCCACCGCTTTGCCTCGCCGGCCGAGTCGCTATA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGGCTGCAGCGTCATCAGTTTCTTCTCCACCGCTTTGCCTCGCCGGTCGAGTAGCTATA 60
Query 61 GTCACCGGATCCTCTCGAGGAATAGGCCGTGCCATAGCCATCCACCTTGCCGAGCTTGGG 120
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GTCACAGGATCTTCTCGAGGAATAGGTCGTGCCATAGCCATCCACCTTGCCGAGCTTGGG 120
Query 121 GCTAGGATCGTCGTTAATTACTCTACTAGCCCCGTTGAGGCTGAGAAGGTTGCGACGGCG 180
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 121 GCTAGGGTCGTCGTTAATTACTCAACTAGCCCCGTTGAGGCTGAGAAGGTTGCCACGGCG 180
Query 181 ATTA-CATCCAACTGTCCAAAGAACGACGCTTCGGAAGTCGCCGG-AAATAGTCCACGTG 238
|||| || |||||||| ||||| |||| ||||||||||||| ||| ||||||||||
Sbjct 181 ATTACCA-CCAACTGTTCAAAG---GACG---CGGAAGTCGCCGGCAAA-AGTCCACGTG 232
Query 239 TCATTGTGGTGAAGGCTGATATCTCGGAGCCGAGCCAGGTAAAGTTGCTTTTCGATGAGG 298
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 233 TCATTGTGGTGAAGGCTGATATCTCAGAGCCGAGCCAGGTAAAGTCGCTTTTCGATGAGG 292
Query 299 CAGAGCGAGTCTTCGAGTCACCGGTTCATATCTTGGTTAACTCAGCCGCTATAGCCGATC 358
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 293 CAGAGCGAGTCTTCGAGTCGCCGGTTCATATCTTGGTTAACTCAGCGGCTATAGCCGATC 352
Query 359 CTAACCATTCCACTATCTCAGATATATCAGTAGAACTTTTTGATCGCATTATCAGTGTCA 418
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 353 CTAATCATTCCACTATCTCAGACATGTCAGTAGAACTTTTTGATCGCATTATCAGTGTGA 412
Query 419 ACACAAGAGGTGCGTTTCTTTGTGCTAGAGAAGCTGCGAACAGGCTAAAACGTGGAGGCG 478
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 413 ACACAAGAGGTGCGTTTATTTGTGCTAGAGAAGCTGCGAATAGGCTAAAACGTGGAGGCG 472
Query 479 GTGGCCGGATAATTCTCCTCTCAACTTCACTGGTTCAATCTTTAAATCCATATTATGGCT 538
||||||||||||||||||||||||| |||||||||||| | |||||| || | |||||||
Sbjct 473 GTGGCCGGATAATTCTCCTCTCAACATCACTGGTTCAAACCTTAAATACAAACTATGGCT 532
Query 539 CATACACGGCTTCAAAGGGAGCCGTAGAAGCTATGGCCAAGATTCTTGCAAAAGAGCTCA 598
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 533 CATACACGGCTTCAAAGGCAGCCGTAGAAGCCATGGCCAAGATTCTTGCAAAAGAGCTCA 592
Query 599 AAGGAACAGAAATCACAGTAAATTGTGTTTCTCCCGGACCCGTCGCCACAGAGATGTTTT 658
|||||||||| |||||||| || ||||||||||| || |||||||||||||| |||||||
Sbjct 593 AAGGAACAGAGATCACAGTTAACTGTGTTTCTCCGGGTCCCGTCGCCACAGAAATGTTTT 652
Query 659 TTACAGGATTAAGCAATGAGGTTGTAGAGAAAGTAAAGTCACAGAACTTATTTGGTAGGA 718
|||||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 653 ACACAGGATTGAGCAATGAGATTGTTGAGAAAGTTAAGTCACAGAACTTATTTGGTAGGA 712
Query 719 TCGGTGAGACCAAAGACATCGCACCTGTTGTTGGGTTCTTAGCCAGTGATGCTGGCGAAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TCGGTGAGACCAAAGACATCGCACCTGTTGTTGGGTTCTTAGCCAGTGATGCTGGCGAAT 772
Query 779 GGATCAACGGTCAAGTCATCATTGCTAATGGTGGCTCTCTCTTGTAA 825
|||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 773 GGATCAACGGTCAAGTCATCATGGCTAATGGTGGCTGTCTCTTGTAA 819
> AT3G03980.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:1031742-1033207 FORWARD LENGTH=983
Length=983
Score = 231 bits (125), Expect = 6e-60
Identities = 442/591 (75%), Gaps = 38/591 (6%)
Strand=Plus/Plus
Query 241 ATTGTGGTGAAGGCTGATATCTCGGAGCCGAGCCAGG-TAAAGTTGCT-TTTCGATGAGG 298
|||||||| |||| || |||| ||||| ||||||| |||| | | ||| |||| ||
Sbjct 276 ATTGTGGTTCAGGCCAATGTCTCTGAGCCAAGCCAGGTTAAA-TCAATGTTT-GATGCGG 333
Query 299 CAGAGCGAGTCTTCG-AGTCACCGGTTCATA-TCTTGGTTAACTCAGCCGCTATAGC-CG 355
| ||| | | ||| | || | |||||||| | || |||||||||| || | || | ||
Sbjct 334 CGGAGAGTGCCTTTGAAG-CGCCGGTTCACATTC-TGGTTAACTCTGCTGGGAT-TCTCG 390
Query 356 ATCCTAACCATTCC-ACTATCTCAGATATATCAGTAGAACTTTTTGATCGCA-TTATCAG 413
|||| || | || || ||| |||| | |||||| ||| ||| |||| | | ||||
Sbjct 391 ATCCAAAGTA-CCCTACGATCGCAGACACATCAGTCGAAGATTTCGATCATACGT-TCAG 448
Query 414 TGTCAACACAAGAGGTGCGTTTCTTTGT-GCTAGAGAAGCTGCGAACAGGCTAAAACGTG 472
||||||||||| ||| ||||| || ||| || || |||||||| || |||||||||| |
Sbjct 449 TGTCAACACAAAAGGAGCGTTCCTGTGTAGCAAG-GAAGCTGCCAATAGGCTAAAACAAG 507
Query 473 GAGGCGGTGGCCGGATAATTCTCCTCTCAACTTCACTGGTTCAATCTTTAAATCCA-TAT 531
|||| ||||| ||||| || || || || |||| | | || ||||||||| ||| |
Sbjct 508 GAGGTGGTGGTCGGATCATACTTCTGACATCTTCCCAGACTCGATCTTTAAAGCCAGGGT 567
Query 532 TATGGCT-CATACACGGCTTCAAAGGGAGCCGTAGAAGCTATGGCCAAGATTCTTGCAAA 590
| ||| | | || | || ||||||| ||| || ||| |||||| |||||||||||||||
Sbjct 568 T-TGG-TGCCTATGCCGCATCAAAGGCAGCTGTGGAAACTATGGTCAAGATTCTTGCAAA 625
Query 591 AGAGCTCAAAGGAACAGAAATCACAGTAAATTGTGTTTCTCCCGGACCCGTCGCCACAGA 650
||||||||||||||||| |||||| | ||| |||||| |||| |||||| ||||||| ||
Sbjct 626 AGAGCTCAAAGGAACAGGAATCACTGCAAACTGTGTTGCTCCAGGACCCATCGCCACTGA 685
Query 651 GATGTTTTTT-ACAGGATTAAG-CA--ATGAGGTTG-TAGAGAAAGTAAAGTCACAGAA- 704
|||||| ||| | ||| ||| | | ||| ||| | || |||| | || | ||||
Sbjct 686 GATGTTCTTTGAT-GGA--AAGACCCCA-GAG-TTGGTGGA-AAAG-ATAGCCGCAGAGT 738
Query 705 CTTA-TTTGGTAGGATCGGTGA-GACCAAAGACATCGCACCTGTTGTTGGGTTCTTAGCC 762
|| ||||| ||| |||| || | |||||||| | | ||| ||||||| ||||| ||
Sbjct 739 CTCCCTTTGGGAGGGTCGGCGAAG-CCAAAGACGTGGTGCCTCTTGTTGGATTCTTGGCT 797
Query 763 AGTGATGCTGGCGAATGGATCAACGGTCAAGTCAT-CATTGCTAATGGTGG 812
|||| | ||| |||||| |||| |||||| |||| | | | |||||||||
Sbjct 798 GGTGACGGTGGTGAATGGGTCAATGGTCAAATCATTCCT-GTTAATGGTGG 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5