BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317287
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04100.1 | Symbols: AGL57 | AGAMOUS-like 57 | chr3:1075299-1... 928 0.0
AT2G11990.1 | Symbols: AGL88 | pseudogene, fragment of a MADS-b... 568 3e-161
> AT3G04100.1 | Symbols: AGL57 | AGAMOUS-like 57 | chr3:1075299-1075922
FORWARD LENGTH=624
Length=624
Score = 928 bits (502), Expect = 0.0
Identities = 579/616 (94%), Gaps = 5/616 (1%)
Strand=Plus/Plus
Query 7 ACgaagcaagcaaagggaagaaaaacaaaggggaagcaaaagatcgagatgaagaaggtg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 ACGAAGCAAGCAAAGGGAAGAAAAACAAAGGGGAAGCAAAAGATCGAGATGAAGAAGGTG 69
Query 67 gaaaaCTATGGAGATAGGATGATTACGTTCTCGAAACGTAAAGCCGGAATTTTCAAGAAA 126
|| ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 70 GAGAACTATGGAGATAGGATGATTACGTTCTCAAAACGTAAAACCGGAATTTTTAAGAAA 129
Query 127 ATGAACGAGCTCGTAGCAATGTGTGACGTTGAAGTGGCTTTCTTGATTTTCTCTCAAGCC 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 130 ATGAACGAGCTCGTAGCAATGTGTGACGTTGAAGTGGCTTTCTTGATTTTCTCTCAACCC 189
Query 187 AAGAAGCCGTATACATTCGCACATCCGTCTATGCAGGAAGTGGCTGACCGGTTAAAGAAC 246
|||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 190 AAGAAGCCCTATACATTCGCACATCCGTCTATGAAGAAAGTGGCTGACCGGTTAAAGAAC 249
Query 247 CCTTCGAGACAAGAACCATTAGCGAAAGATGATACGGGACCCCTCGTGGAAGCTTATAAG 306
|||||||||||||||||||||| || ||| ||||| |||||||||| ||||||||||||
Sbjct 250 CCTTCGAGACAAGAACCATTAGAGAGAGACGATACCAGACCCCTCGTCGAAGCTTATAAG 309
Query 307 AAACGAAGGTTCCATGATCTCATaaaaaaaaTGGAGGCGCTCGAGGAGGAGCTTACGATG 366
||||||||| |||| || ||| |||||||||||||||||||||| ||||||||| |||||
Sbjct 310 AAACGAAGGCTCCACGACCTCGTAAAAAAAATGGAGGCGCTCGAAGAGGAGCTTGCGATG 369
Query 367 GATCTAGAGAAGCTGAAACTGCTGAAGGAATCGAGAAATGAAAAGAAGTTAGACAAAATG 426
|||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 370 GATCTAGAGAAGTTGAAACTGTTGAAGGAATCGAGAAATGAAAAGAAGTTAGATAAAATG 429
Query 427 TGGTGGAACTTTCCTTCGAAAGGCTTGAGCGTGGAGGAGCTGAAGCAAAGGCACCAAGCG 486
|||||||||||||||||| |||| ||||||| | |||||||| |||||||| ||||||||
Sbjct 430 TGGTGGAACTTTCCTTCGGAAGGTTTGAGCGCGAAGGAGCTGCAGCAAAGGTACCAAGCG 489
Query 487 ATTG-TCGAGTTACGTGATAACTTATGCGACAATATGGCTCTCTTACGATTGGGAAAAGA 545
|| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 490 AT-GCTCGAGTTACGTGATAACTTATGCGACAATATGGCTCACTTACGATTGGGAAAAGA 548
Query 546 C-G-G-TGGTTCATCTTCTGTTCGTGTGGGACGTCGACTGTCTGGTGGTGTTCGTCTGTT 602
| | | ||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 549 CTGTGGTGGTTCATCTTCTGTTCGTGTGGGACGTCGAGTTTCTGGTGGTGTTCGTCTGTT 608
Query 603 CGATCGTGAAGCATGA 618
||||||||||||||||
Sbjct 609 CGATCGTGAAGCATGA 624
> AT2G11990.1 | Symbols: AGL88 | pseudogene, fragment of a MADS-box
protein, blastp match of 43% identity and 3.7e-14 P-value
to GP|2735764|gb|AAB94005.1||AF008651 MADS transcriptional
factor; STMADS16 {Solanum tuberosum} | chr2:4833236-4833625
FORWARD LENGTH=390
Length=390
Score = 568 bits (307), Expect = 3e-161
Identities = 363/389 (93%), Gaps = 8/389 (2%)
Strand=Plus/Plus
Query 127 ATGAACGAGCTCGTAGCAATGTGTGACGTTGAAGTGGCTTTCTTGATTTTCTCTCAAGCC 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGAACGAGCTCGTAGCAATGTGTGACGTTGAAGTGGCTTTCTTGATTTTCTCTCAA-CC 59
Query 187 -AAGAAGCCGTATACATTCGCACATCCGTCTATGCAGGAAGTGGCTGACCGGTTAAAGAA 245
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 60 GAAGAAGCCCTATACATTCGCACATCCGTCTATGAAGGAAGTGGCTGACCGGTTAAAGAA 119
Query 246 CCCTTCGAGACAAGAACCATTAGCGAAAGATGATACGGGACCCCTCGTGGAAGCTTATAA 305
||||||||||||||||||||||| |||||| |||| |||||||||| |||||||||||
Sbjct 120 CCCTTCGAGACAAGAACCATTAGAGAAAGACAATACCCGACCCCTCGTCGAAGCTTATAA 179
Query 306 GAAACGAAGGTTCCATGATCTCATaaaaaaaaTGGAGGCGCTCGAGGAGGAGCTTACGAT 365
||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||
Sbjct 180 GAAACAAAGGTTCCATGACCTCATAAAGAAAATGGAGGCGCTCGAAGAGGAGCTTGCGAT 239
Query 366 GGATCTAGAGAAGCTGAAACTGCTGAAGGAATCGAGAAATGAAAAGAAGTTAGACAAAAT 425
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 GGATCTAGAGAAGTTGAAACTGTTGAAGGAATCGAGAAATGAAAAGAAGTTAGACAAAAT 299
Query 426 GTGGTGGAACTTTCCTTC-GAAAGGCTTGAGCGTGGAGGAGCTG-AAGCAAAGGCACCAA 483
|||||||||||||||||| ||| || ||||||||| | |||||| ||| |||||||||||
Sbjct 300 GTGGTGGAACTTTCCTTCAGAA-GGTTTGAGCGTGAAAGAGCTGCAAG-AAAGGCACCAA 357
Query 484 GCGATTG-TCGAGTTACGTGATAACTTAT 511
||||| | |||||||||||||||||||||
Sbjct 358 GCGAT-GCTCGAGTTACGTGATAACTTAT 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5