BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317300
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04310.1 | Symbols: | unknown protein; Has 44 Blast hits to... 1158 0.0
> AT3G04310.1 | Symbols: | unknown protein; Has 44 Blast hits
to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:1141581-1142528 REVERSE
LENGTH=810
Length=810
Score = 1158 bits (627), Expect = 0.0
Identities = 752/812 (93%), Gaps = 10/812 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAATCTGCTGTATCTTCAGCTTTCTTCTTGCGTAGTCAGAGGCAGATACTGTTCT 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1 ATGGCGAATCTGCTGTATCTTCAGCTTTCTTCTTGCGTCGTCAGAGGCAGATTCTGTTCT 60
Query 61 ATGAACTGCGATTTTGATCTCTGCCCAAGTATCGTGAGCCGCGGTTCCTTTAAGTGCCGC 120
| ||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct 61 CTAAACTGCGATTTTGATCTCTGCCCAAATATCGTGAGCCGCGGTTCCTTTGATTGCCGC 120
Query 121 GTCTCCCGTGGTCCTAGCTGGGAGGAGGAGCTCTTCCGCGACGAAGGGTTTGC-TCGATT 179
| |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 121 GCCTCCCGCGGTCCTAGCTGGGAGGAGGAGCTCTTCCGCGACGAAGGTTTTGCTTCG-TT 179
Query 180 TGAGTTCGGAAACCGCAAAAAGAAGAGGCCATGGTGGC-T--CGATGATGATGACGATGA 236
||||||||||||||| |||||||||||||| ||||||| | |||||||||||||||||
Sbjct 180 TGAGTTCGGAAACCGTAAAAAGAAGAGGCCTTGGTGGCTTGATGATGATGATGACGATGA 239
Query 237 CGATTATGATGATTGGA--CA-GATGAAGAAGAAGACTGGAGTACAGTTTTTGAGGTAGT 293
||| | |||||||||| | || ||||||||||||||| || |||||||||||| |
Sbjct 240 CGACAACGATGATTGGATGAATGAAGAAGAAGAAGACTGGTCTATGGTTTTTGAGGTATT 299
Query 294 TAGGACTTTGAGTTGGATGCTTGCACCAATCGGCATATCTTTGCTTCTTGGAACAGATTC 353
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TAGAACATTGAGTTGGATGCTTGCACCAATTGGCATATCTTTGCTTCTTGGAACAGATTC 359
Query 354 AAACGCGGGTTTTATGGCATTAGCTGTTCCTTTAGTTCAATCTGTGTTGTCCCTTGTGGT 413
|||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 360 AAACGCGGGTGTAATGGCATTAGCAGTTCCTTTAGTGCAATCTGTGTTGTCTCTTGTGGT 419
Query 414 TAGTAAGGTCTGGAGCAGGCCAAGCATTAGGCCTATGAAAAGAAGCAGAAGAGATTCATT 473
|||||| || ||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 420 TAGTAAAGTTTGGAGCAGGCCAAGCATTAGGTCTATGAAAAGAAGTAGAAGAGATACATT 479
Query 474 TTCGAGATCTGCGAGTGTAAGTAGTGCAAGAACAAGGAAAGCTAGGCAAGGAGAAAACAT 533
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 480 TTCGAGATCTGCGAGTGTAAGTAGTGGAAGAACAAGGAAAGCTAGGCAAGGAGGAAACAT 539
Query 534 GAGGGGTGGTGTGGATAAGGAAGGATACAAGTCATGGATGGTAGGAGATGCTGATTCTAA 593
|||||||||||| ||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 540 GAGGGGTGGTGTAGATAAGGGAGGATACAAGTCATGGATAGTAGGAGATGATGATTCTAA 599
Query 594 CATCATGGGTACTGGCTATGGAGGATGGGATGATCTAGACACGCTAAGGGAGATTAGAAA 653
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 CAGCATGGGTACTGGCTATGGAGGATGGGATGATCTAGATACGCTAAGGGAGATTAGAAA 659
Query 654 TGACAATCCGTCAAACGAGAATGTTCGTCAAAAACAACAGTCTGTAA-AAAGAGCTAGTC 712
||||||||| | ||||||||||||||||| ||||||||||| || || |||| |||| ||
Sbjct 660 TGACAATCCATTAAACGAGAATGTTCGTCCAAAACAACAGTTTGAAAGAAAG-GCTACTC 718
Query 713 GGCGGTGGAGAGTTAAGGAGAAGCCATTGCTCTTGAGGATGCTAATTGCTGCCTTCCCTT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGCGGTGGAGAGTTAAGGAGAAGCCATTGCTCTTGAGGATGCTAATTGCTGCCTTCCCTT 778
Query 773 TTTTGGGTTCATGGACCAAATTGTTGTTTTGA 804
||||||||||||||||||||||||||||||||
Sbjct 779 TTTTGGGTTCATGGACCAAATTGTTGTTTTGA 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5