BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317308
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04450.1 | Symbols: | Homeodomain-like superfamily protein ... 1956 0.0
AT5G29000.2 | Symbols: PHL1 | Homeodomain-like superfamily prot... 484 7e-136
> AT3G04450.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:1184297-1186340 FORWARD LENGTH=1410
Length=1410
Score = 1956 bits (1059), Expect = 0.0
Identities = 1247/1336 (93%), Gaps = 20/1336 (1%)
Strand=Plus/Plus
Query 1 ATGACACTTGCTAGCGATTTTGGTTTTCCAACAGCTATGTCTTCATCTTTTACAACTCTA 60
|||||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||
Sbjct 6 ATGACACTTGCTAGCGATTTTGGTTTTCCATCCGCTATATCTTCATCTTTTACAATTCTA 65
Query 61 GAAGAGAGATACCGCCACAACTTTCCTAACACTTTGTGGGTTTCATCAGGACAGGAACT- 119
||||||||||||| | | |||||||||||||||||||| |||||||||||||||||| |
Sbjct 66 GAAGAGAGATACCACAATAACTTTCCTAACACTTTGTGTGTTTCATCAGGACAGGAA-TC 124
Query 120 GATGAATAACAGTCCCGTCCCCTGTCAGGTGTTTCCTCTGGTCTCTGGCGGCAGTTCTGG 179
||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 125 GATGAATAACAACCCCGTCCCCTGTCAGGTGTTTCCTCTGGTCTCTGGTGGTAGTTCTGG 184
Query 180 TGGTAATTTGTTTTCATCTTCTTCCGGATTCTGCAATGGTGTCTATGTTTCATCTTCCTC 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TGGGAATTTGTTTTCATCTTCTTCCGGATTCTGCAATGGTGTCTATGTTTCATCTTCCTC 244
Query 240 CCAGGCACGGCCATCTGTTTCTACCGTGCAAAGAGACAGAATGACTGTTGCTCACGTCTC 299
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 245 CCAGGCACGGCCATCTGTTTCTACCGTGCCAAGAGACAGAATTACTGTTGCTCACGTCTC 304
Query 300 TGGTGAAGGGCAGAGGCAGGAATGCTCTGTGGAAACACAATCCTTGCATTTGATCAATCA 359
||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 305 TGGTGAAGGGCAGAGGCAGGAATGCCCTGTGGAAACACATTCCTTGCAATTGATCAATCA 364
Query 360 ACCTCAAGAACAGAAAAATATGACATGGTCTTCAGACCAGCTTCAGGGCTTCTTTGATTT 419
||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||| |||||
Sbjct 365 ACCTCAAGAACAGAAAATTATGACTTGGTCTTCAGACCAGATTCGGGGCTTCTTCGATTT 424
Query 420 TCCTGTTCCGGATCCACAAGCAGAGAGCAGCAGAACTATGGTCTCATCCAAGGAAGTCCT 479
||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||
Sbjct 425 TCCTGTTCCAGATCCACAAGCAGCGAGCAGCAGAACTATGGTTTCATCCAAGGAAGTGCT 484
Query 480 TTTGAAATACGAATGGCCAGACTGGGCGGATCAGTTGATCTCTGATGATGGTCTTGAACC 539
|| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 485 TTCAAAATGCGAATGGCCAGACTGGGCGGATCAGTTGATCTCTGATGATAGTCTTGAACC 544
Query 540 AAATTGGTCGGAGCTTCTAGGTGATCCTAATGTCCTCAATCTAGATTCAAAGATA-ACAC 598
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | ||
Sbjct 545 AAATTGGTCGGAGCTTCTAGGTGATCCTAATGTACTCAATCTATATTCAAAGATAGAAAC 604
Query 599 CACCGTCTTCTGATAAAGCGAGGCAAGAGATAGTATTT-GAAAATCAGCATCAGGTGGAT 657
|| ||||||||||| ||| ||||||||||| || ||| |||| ||||||||||||||||
Sbjct 605 -ACAGTCTTCTGATATAGCAAGGCAAGAGATCGTCTTTAGAAA-TCAGCATCAGGTGGAT 662
Query 658 CCATCAATGGAGCCGTTTAATACCAAAAATTCACCAGCTATTTCAATGACATCTAAGCAA 717
||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct 663 CCATCAATGGAGCCGTTTAATGCCAAAAGCCCACCAGCTAGTTCAATGACATCTAAGCAA 722
Query 718 CGAATGCGTTGGACACCAGAACTCCATGAAGCATTTGTTGAAGCTATCAATCAGCTCAGT 777
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 723 AGAATGCGTTGGACACCAGAACTTCATGAAGCATTTGTCGAAGCTATCAATCAGCTCGGT 782
Query 778 GGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGAAGCTCATGAATAGCCCCGGGTTGACC 837
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 783 GGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGAAGCTCATCAATAGCCCTGGGTTGACC 842
Query 838 ATTTATCATGTCAAAAGCCATTTGCAGAAATACAGAACGGCAAGGTATAAACCAGAGCTT 897
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 843 GTTTATCATGTCAAAAGCCATTTGCAGAAATACAGAACTGCAAGGTATAAACCAGAGCTT 902
Query 898 TCAGAAA-ATACAGAAGAACCTCAAGTGAAGAATTTGAAAACCATTGAAGATATCAAATC 956
|| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 903 TCC-AAAGATACAGAAGAACCTCTAGTAAAGAATTTGAAAACCATTGAAGATATCAAATC 961
Query 957 TCTGGACTTGAAGACGAGCATTGAAATCACTGAAGCTCTACGGTTACAGATGAAAGTTCA 1016
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 962 TCTTGACTTGAAGACGAGCATTGAAATCACTGAAGCTCTCCGGTTACAGATGAAAGTTCA 1021
Query 1017 AAAACAACTCCACGAGCAACTTGAGATCCAAAGATCATTGCAGTTACAAATCGAAGAACA 1076
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1022 AAAACAACTCCACGAGCAACTTGAGATCCAAAGATCACTGCAGTTACAAATCGAAGAACA 1081
Query 1077 AGGTCGGTATCTTCAGATGATGATTGAGAAACAACAGAAGATGCAAGAGAACAAAAAAGA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 AGGTCGGTATCTTCAGATGATGATTGAGAAACAACAGAAGATGCAAGAGAACAAAAAAGA 1141
Query 1137 CACTTCTTTCTCATCATCAATGCCAGAAGTTGACCCTTGTTTAGCTCCATCACCAAACCT 1196
| || ||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1142 CTCTACTTCCTCATCATCAATGCCAGAAGCTGACCCTTC---AGCTCCATCACCAAACCT 1198
Query 1197 TTCACAAGCTTTCC---ATAAAGCAACCAATTCAGAATCATCAATAACT--GA---T-CA 1247
||||||| |||||| |||||||||||||||||||| ||||||||||| || | ||
Sbjct 1199 TTCACAACCTTTCCTCCATAAAGCAACCAATTCAGAACCATCAATAACTCAGAAACTGCA 1258
Query 1248 GAATGGTTATAGCACAATGGATCAAAGTGAATCTGCGTCTGGGACTAGTAATAGGAAACG 1307
|||||||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 1259 GAATGGTTCTAGCACAATGGATCAAAGTGAATCTACTTCTGGGACTAGTAATAGAAAACG 1318
Query 1308 GGTTAGAGAAGATTAG 1323
||||||||||||||||
Sbjct 1319 GGTTAGAGAAGATTAG 1334
> AT5G29000.2 | Symbols: PHL1 | Homeodomain-like superfamily protein
| chr5:11022083-11024275 REVERSE LENGTH=1541
Length=1541
Score = 484 bits (262), Expect = 7e-136
Identities = 579/730 (79%), Gaps = 30/730 (4%)
Strand=Plus/Plus
Query 419 TTCCTGTTCCGGATCCACAAGCAGAGAGCA--GCAG-AACTATGGTCTCATCCAAGGAAG 475
||||||||| | ||| |||||||||||| | | || || ||| ||||||| ||||
Sbjct 438 TTCCTGTTCAGAATCTACAAGCAGAGAGTAGTGGAGTAAGGGTGGACTCATCCGTGGAAC 497
Query 476 TCCTTTTGAAATA-CGAATGGCCAGACTGGGCGGATCAGTTGA--TCT-CTGATGATGG- 530
| | | |||| | ||||||| ||| ||||| |||||| ||| ||| ||| |||||
Sbjct 498 TTCATAAGAAA-AGTGAATGGCAAGATTGGGCAGATCAGCTGATTTCTGTTGACGATGGT 556
Query 531 TCTTGAACCAAATTGGTCGGAGCTTCTAGGTGATCCTAATG-T-CCTCAATCTAGATTCA 588
|| ||| ||||||||||| || ||||| || ||| | || | | || ||||| | |||||
Sbjct 557 TC-TGAGCCAAATTGGTCTGAACTTCTTGGAGATTC-AA-GTTCCCACAATCCAAATTCA 613
Query 589 AAGATAAC-ACCACCGTCTTCT-GATAAAGCGAGGCAAGAGATAGTATTTGAA-AATCAG 645
||||| | | |||| | || | ||| | | |||| ||| ||| | | || | |||
Sbjct 614 GAGATACCTA-CACCAT-TTTTGGATGTACCAAGGCTAGATATAACAGCT-AACCAGCAG 670
Query 646 CATCAGGTGGATCCATCA-ATGGAGCC-GTTTAATACCAAAAATTCACCAGCTA-TTTCA 702
|| ||| ||| | ||||| | ||| || | | | || ||| ||| || ||| | | |
Sbjct 671 CAACAGATGGTTTCATCAGA-GGA-CCAGCTCAGCGGCAGAAACTCATCATCTAGTGT-A 727
Query 703 ATGACATCTAAGCAACGAATGCGTTGGACACCAGAACTCCATGAAGCATTTGTTGAAGCT 762
|||||||| ||||| |||||||||||||||||||| || || ||||| |||||||||
Sbjct 728 GCAACATCTAAACAACGTATGCGTTGGACACCAGAACTTCACGAGGCATTCGTTGAAGCT 787
Query 763 ATCAATCAGCTCAGTGGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGAAGCTCATGAAT 822
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 788 GTTAATCAGCTTGGTGGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGAAGCTCTTGAAT 847
Query 823 AGCCCCGGGTTGACCATTTATCATGTCAAAAGCCATTTGCAGAAATACAGAACGGCAAGG 882
| ||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 848 AACCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAGAAATATAGAACGGCAAGG 907
Query 883 TATAAACCAGAG-CTTTCAGAAAATACAGAAGAACCTCAAGTGAAGAATTTGAAAACCAT 941
|||||||| ||| ||| | ||| ||||| ||||||||||| |||||| ||| | | ||
Sbjct 908 TATAAACCGGAGACTT-CGGAAGTTACAGGAGAACCTCAAGAGAAGAAGATGACATCTAT 966
Query 942 TGAAGATATCAAATCTCTGGACTTGAAGACGAGCATTGAAATCACTGAAGCTCTACGGTT 1001
|||||||||||||||||| ||| |||| |||||| |||| ||||| |||||||||||||
Sbjct 967 TGAAGATATCAAATCTCTTGACATGAAAACGAGCGTTGAGATCACACAAGCTCTACGGTT 1026
Query 1002 ACAGATGAAAGTTCAAAAACAACTCCACGAGCAACTTGAGATCCAAAGATCATTGCAGTT 1061
||| ||| |||| || |||| ||||||||||| || ||||||||| | ||| |||||||
Sbjct 1027 ACAAATGGAAGTGCAGAAACGTCTCCACGAGCAGCTCGAGATCCAACGGTCACTGCAGTT 1086
Query 1062 ACAAATCGAAGAACAAGGTCGGTATCTTCAGATGATGATT-GAGAAACAACAGAAGATGC 1120
||| || ||| |||| || ||||| || ||||||||| || ||||||||||| ||||| |
Sbjct 1087 ACAGATTGAAAAACAGGGCCGGTACCTACAGATGATG-TTCGAGAAACAACAAAAGATAC 1145
Query 1121 AAGAGAACAA 1130
|||| |||||
Sbjct 1146 AAGACAACAA 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65110106865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5