BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg317317

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04540.1 | Symbols:  | Cysteine-rich protein | chr3:1223251-...   377    2e-104
  AT1G32763.1 | Symbols:  | Cysteine-rich protein | chr1:11860486...   294    2e-79 


> AT3G04540.1 | Symbols:  | Cysteine-rich protein | chr3:1223251-1223714 
FORWARD LENGTH=297
Length=297

 Score =  377 bits (204),  Expect = 2e-104
 Identities = 232/245 (95%), Gaps = 4/245 (2%)
 Strand=Plus/Plus

Query  1    ATGGCCATCACAAAGACTTCAGTGACTCTTTTACTCTTAATAATAATGGCTGTTTCGTTG  60
            ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct  55   ATGGCCATCACAAAGACTTCAGTGACTCTTTTACTTTTAATAATAATGGCTGCTTCGTTG  114

Query  61   TCTAATTTCAGCGTCTTGGCTTCGGACATCAAACCTACAGGAAGAATTGATAATCAATGC  120
            ||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct  115  TCTAATTTCAGCGTCTTGGCTTCAGAGATCAAACCTACAGGAAGAGTTGATAATCAATGC  174

Query  121  AAGCAGATGTGTTCGGGC--GGTTACGGGGACGGTAAATGTGCCGCGGACTGTAGGAAGG  178
            ||| |||||||||| |||   |||  |||||||||||||||||||| |||||||||||||
Sbjct  175  AAGGAGATGTGTTC-GGCAACGTT-TGGGGACGGTAAATGTGCCGCAGACTGTAGGAAGG  232

Query  179  CTGGTTTCTCATCCGGACGATGTCTTACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCA  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  233  CTGGTTTCTCATCCGGACGATGTCTTACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCA  292

Query  239  CCTAG  243
            |||||
Sbjct  293  CCTAG  297


> AT1G32763.1 | Symbols:  | Cysteine-rich protein | chr1:11860486-11860891 
REVERSE LENGTH=246
Length=246

 Score =  294 bits (159),  Expect = 2e-79
 Identities = 210/234 (90%), Gaps = 6/234 (3%)
 Strand=Plus/Plus

Query  10   ACAAAGACTTCAGTGACTCTTTTACTCTTAATAATAATGGCTG-TTTCGTTGTCTAATTT  68
            |||||||||||||||||| ||||| ||||| ||||| |||||| ||| | | || |||| 
Sbjct  10   ACAAAGACTTCAGTGACTTTTTTATTCTTATTAATATTGGCTGCTTTTG-TATCCAATTA  68

Query  69   CAGCGTCTTGGCTTCGGACATCAAACCTACAGGAAGAATTGATAATCAATGCAAGCAGAT  128
            || ||| |||||||| || |||||||||||||| ||||||||| ||||||||||||||||
Sbjct  69   CAACGTATTGGCTTCAGAGATCAAACCTACAGGGAGAATTGATGATCAATGCAAGCAGAT  128

Query  129  GTGTTCGGGC--GGTTACGGGGACGGTAAATGTGCCGCGGACTGTAGGAAGGCTGGTTTC  186
            |||||| |||   | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  129  GTGTTC-GGCAACG-TACGGGGACGGTAAATGTGCCTCGGACTGTAGGAAGGCTGGTTTC  186

Query  187  TCATCCGGACGATGTCTTACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCACC  240
            ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  187  TCATCCGGACGTTGTCTAACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCACC  240



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5