BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317350
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04850.1 | Symbols: | Tesmin/TSO1-like CXC domain-containin... 1127 0.0
AT2G48100.1 | Symbols: | Exonuclease family protein | chr2:196... 147 5e-34
AT2G20110.2 | Symbols: | Tesmin/TSO1-like CXC domain-containin... 63.9 5e-09
> AT3G04850.1 | Symbols: | Tesmin/TSO1-like CXC domain-containing
protein | chr3:1331946-1335993 REVERSE LENGTH=2385
Length=2385
Score = 1127 bits (610), Expect = 0.0
Identities = 772/848 (91%), Gaps = 20/848 (2%)
Strand=Plus/Plus
Query 995 TTCTACCCATACCACGAACAATTGGCCTGCACTTGAATGGTTTCGTGAACCCCTCAGTCT 1054
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTCTACCCATTCCACGAACGATTGGCCTGCACTTGAATGGTTTCGTGAACCCCTCAGTCT 1259
Query 1055 CAAATGGCCGaaaaaaaaaaaaaTTCAAAGATGGTCGGGTTTTTCCTCCTACAACATTTC 1114
||| ||||||||||||||||||| |||||||||||| || ||||||| ||||||||||||
Sbjct 1260 CAAGTGGCCGAAAAAAAAAAAAAATCAAAGATGGTCAGGCTTTTCCTTCTACAACATTTC 1319
Query 1115 ATCATAATAATGAAGATGAATTCTCAACTCCTGTCTCCACAAAAAGAGA-TT--TGGTAT 1171
|| |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1320 ATTATAATATTGAAGATGAATTCTCAACTCCTGTCTCCACAAAAAGAGATTTGGTGGTAT 1379
Query 1172 TCAGTGGTGTCAAAATCATGGAGGCTACTGAGAGATCAATGGAAGGAGAATGTATTGACC 1231
|||||| |||||||||||||||| || ||||||||||| |||||||||||||| ||||||
Sbjct 1380 TCAGTGATGTCAAAATCATGGAGCCTCCTGAGAGATCAGTGGAAGGAGAATGTTTTGACC 1439
Query 1232 AACACATGGCTATAGAGAACAGGCAATTGTCTCAAGGACTTGACAAACTTGGCAGCTGTA 1291
||| |||||| || || || |||||||||||||||||||||||| |||||||||||||||
Sbjct 1440 AACTCATGGCAATGGAAAATAGGCAATTGTCTCAAGGACTTGACGAACTTGGCAGCTGTA 1499
Query 1292 AGCGCTGTAAATGTAAGAAATCACAATGCTTGAAGCTGTATTGTGAATGTTTTGCTGCTG 1351
||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1500 AGCGCTGTAAATGTAGGAAATCACAATGCTTGAAGCTGTATTGTGAATGTTTTTCCGCTG 1559
Query 1352 GTCTATACTGTGTTGAACCTTGTTCATGTCAAAATTGTTTCAATAAGCCCATTCATGAAG 1411
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GTCTATTCTGTGGTGAACCTTGTTCATGTCAAAATTGTTTCAATAAGCCCATTCATGAAG 1619
Query 1412 ACCTGGTTATGAAAAGTCGTGAAGTGATTGAAGCTCGCAACCCATTAGCTTTTGCTCCAA 1471
|||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1620 ACCTAGTTATGAAAAGTCGTGAAGTGATTAAAGCCCGCAACCCATTAGCTTTTGCTCCAA 1679
Query 1472 AAGTGGTCTCCACTTCTGATACTGCTATAGATTTATGGGTCGAGAACAACAAGACTCCTG 1531
|||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1680 AAGTGGTCTCAACTTCTGATACTGTTATAGATTTATGGGTCGAGAACAGCAAGACTCCTG 1739
Query 1532 CTTCAGCAAGACACACAAGAGGATGCAACTGCAGGAAATCCGGCTGCTTAAAGAAATACT 1591
||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct 1740 CTTCAGCAAGACACAAAAGAGGATGCAACTGCAGGAAATCAGGCTGCTCAAAGAAATATT 1799
Query 1592 GTGAATGCAATT-TGATGGGCGTTCGATGCTCCTCGAGCTGTAGATGCATAGGATGCAAG 1650
|||||||| || ||||||||||| |||||||||| | ||| |||||||| |||||||||
Sbjct 1800 GTGAATGCT-TTATGATGGGCGTTGGATGCTCCTCTAACTGCAGATGCATGGGATGCAAG 1858
Query 1651 AATGTTTTTGGTCACCCAGATGAAAAATGTGCGGGAGAATCTGATGCAGTAACAAACAAT 1710
||| |||||||||| || |||| ||||||||||||| ||||||| ||||||| ||||
Sbjct 1859 AATACTTTTGGTCACACAAATGAGCAATGTGCGGGAGATTCTGATGTGGTAACAATCAAT 1918
Query 1711 GATGAAGCTAAACA-T-TG-TGGT---G---AT--T-CAAGGCAAAACGAAGAAACCTCA 1758
|||||||||||||| | || || | | || | |||||||||||||||||| || |
Sbjct 1919 GATGAAGCTAAACACTATGGTGATCATGGCGATGCTTCAAGGCAAAACGAAGAAATCTTA 1978
Query 1759 AACAGTGAGAGAAGGAACCGCTTGTTGCTCCCAGGTTCTGTAGCATTCCGTTCCTTAACA 1818
| ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1979 ACCAGTGAGAGAA--A-CCGCTTGTTGCTCCCTGGTTCTGTAGCATTCCGTTCCTTAACA 2035
Query 1819 TCACTGTC 1826
||||||||
Sbjct 2036 TCACTGTC 2043
Score = 1014 bits (549), Expect = 0.0
Identities = 806/923 (87%), Gaps = 46/923 (5%)
Strand=Plus/Plus
Query 1 ATGGATACACCAGATAAGAACCGCATCTCCGCCGTTTCCTTGC-GCAACTTTGAGTATTC 59
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||
Sbjct 143 ATGGATACACCAGATAAGAACCGCATCTCCGCCGTTTCCTT-CTGCAACTTCGAGGATTC 201
Query 60 TCCAGTTTTTCAATATATTAATGAACTCTCACCAATAGAGCCAGTAAAACCAGCACCCCC 119
|||||||||||||||||||||||| ||||| |||||||||||||| || |||| || |||
Sbjct 202 TCCAGTTTTTCAATATATTAATGATCTCTCTCCAATAGAGCCAGTGAAGCCAGGACGCCC 261
Query 120 AGAAAATATCTTGCACTCACTGGCTTTTACATCTCCATCAT-ATC-T-AT-T-TA----G 170
||| ||||||||||||||||||| ||||||||||||||||| ||| | || | || |
Sbjct 262 AGAGAATATCTTGCACTCACTGGTTTTTACATCTCCATCATCATCATCATCTCTATTTTG 321
Query 171 CTCCCCGCAGTTAACCTCTTACCGAGATTCCAGATTTTCCATCAAAAGGCATCGTTCTCT 230
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 322 TTCCCCGCAGTTAAACTCTTACCGAGATTCCAGATTTTTCATCAAAAGGCATCGTTCTCT 381
Query 231 AGATCTATCTAGTCCACCACTAGTTCTCATTGGTGAGACTGTAAAAACCTCACCAGATGC 290
||||||||| ||| ||| |||| ||||| ||||||||| |||||| |||||||||
Sbjct 382 AGATCTATCGAGT---CCAGTAGTCCTCATCGGTGAGACTCTAAAAAACTCACCAGA--- 435
Query 291 TCAGGAAGCTGTTAAGATATCAGGACTATGTGAGGAGCAGCTACAGTGTAGGCCTGCA-C 349
| || || ||| | | |||||| ||||| |||||||||||| |
Sbjct 436 T------GC--TT----TAT---G-----G-GAGGAGAAGCTAAAGTGTAGGCCTG-AGA 473
Query 350 AGCTGGCAAATGTTTCTGAAACTAAGCCATTTAAGGAGCAGATAAGCTTAGCAATTGAGT 409
|| ||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 474 AGTTGGAAAATGTTTCTGAACCCAAGCCATTTAAGGAGCAGATAAGCTTAGCAATTGAGT 533
Query 410 TGGCGAATTCATTGAAACACGCAATG-GATGGATGTGATACTCAAATGGTTTCTTGTGAT 468
||||||||||||||||||||| || | ||||||||||||| ||| |||||||||||||||
Sbjct 534 TGGCGAATTCATTGAAACACGGAA-GAGATGGATGTGATATTCAGATGGTTTCTTGTGAT 592
Query 469 GAAGTACCAATGGATGCTGAAAATGAATTAGGAGGCTGTGGTGGATCGAGAGAGCTGTCT 528
|||||||| ||||||||||| ||||| ||||| || |||||||||| ||||||||||||
Sbjct 593 GAAGTACCTATGGATGCTGATGATGAAATAGGAAGCGGTGGTGGATCCAGAGAGCTGTCT 652
Query 529 GATGAGTTATGTAGACACCCTATTGATCCACGTGACTTTGATGATGATTCAGATGGAGTA 588
||||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||
Sbjct 653 GATGAGTTATGTAGACAGTCTTTTGATCCACTTGACTTTGATGCTGATTCAGATGGAGTA 712
Query 589 CATCAAACTGAAGAAATGGAAGCTGAGAGTGGTTTTGGTCCAGAAGTAATAATGTTTGAT 648
| ||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 713 CTTCACACTGATGAAATGGAAGCTGAGAGTGGGTTTGGTAAAGAAGTAATAATGTTTGAT 772
Query 649 GTTGCTGGTATCCAGAACAATGAGCAACAGATTCCAAGGACCGCAGATCCTAGATTTTAT 708
||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 773 GTTGCTGATATCCAGAACTATGAGCAACAGATTCCAAGGACCACAGATCCTAGATTTTAT 832
Query 709 TCTCTTGCTTCTGTGCCTCAGCAGTTTTCTATCCGTTGTAATAACTCAGCGAATGTACTT 768
||||||||||||| |||||| |||||||||||| |||||||||||| |||| |
Sbjct 833 TCTCTTGCTTCTGAGCCTCAACAGTTTTCTATCTACTGTAATAACTCAAATTATGT-CGA 891
Query 769 -GAGCCTGGA-GGTTCTTGCAGTGTACAAGTTGCAGCTGGAGCTCCAGACATTACTCTCA 826
|||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 892 AGAGCG-GGAAGGTTCGTGCAGTGTACAAGTTGCAGCTGGAGCTCCAGACATTAATCTCA 950
Query 827 GCAGTTCCTCCAAAGTAGCAGCTATTGTTTCAACTGCTGAAGCTGAAGACAAGGAAGATA 886
| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 951 GTTGTTCCTCCAAGGTAGCAGCTATTGATTCAACTGCCGAAGCTGAAGACAAGGAAGATA 1010
Query 887 AAGACCTACAGCCCAGTCGCAAG 909
||||||| ||||||||| |||||
Sbjct 1011 AAGACCTTCAGCCCAGTGGCAAG 1033
Score = 95.3 bits (51), Expect = 2e-18
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 923 GGATACCTTTGCGTGATTCTACAAATGATCTTCCTCTTGATTCTACCTCTA 973
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GGATACCTTTGCGTGATTCTACAAATGATCTTCCTCTTGATTCTACCTCTA 1139
> AT2G48100.1 | Symbols: | Exonuclease family protein | chr2:19670501-19673292
FORWARD LENGTH=1739
Length=1739
Score = 147 bits (79), Expect = 5e-34
Identities = 107/120 (89%), Gaps = 3/120 (3%)
Strand=Plus/Minus
Query 591 TCAAACTGAAGAAATGGAAGCTGAGAGTGGTTTTGGTCCAGAAGTAATAATGTTTGATGT 650
||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 1630 TCAAACTGATGAAATGGAAGCTGAGAGTGGGTTTGGTAAACAAGTAATAATGTTTGATGT 1571
Query 651 TGCTGGTATCCAGAACAATGAGCAACAGATTCCAAGGACCGCAGATCC-T-AGATTTTAT 708
|||||||||||| ||| ||||||||||||||||||| ||| ||||| | | ||| |||||
Sbjct 1570 TGCTGGTATCCACAACTATGAGCAACAGATTCCAAG-ACCTCAGATGCATCAGACTTTAT 1512
> AT2G20110.2 | Symbols: | Tesmin/TSO1-like CXC domain-containing
protein | chr2:8684496-8687218 FORWARD LENGTH=2085
Length=2085
Score = 63.9 bits (34), Expect = 5e-09
Identities = 59/70 (84%), Gaps = 6/70 (9%)
Strand=Plus/Plus
Query 1297 TGTAAATGTAAGA-AATCACAATGCTTGAAGCTGTATTGTGAATGTTTTGC-TGCTGGT- 1353
||||| ||||| | | |||| ||||||||||||||||||||||||||||| | ||||
Sbjct 361 TGTAACTGTAA-ACACTCACGGTGCTTGAAGCTGTATTGTGAATGTTTTGCAT-CTGGCA 418
Query 1354 CTATACTGTG 1363
|| |||||||
Sbjct 419 CT-TACTGTG 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90862986450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5