BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317378
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05100.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1570 0.0
> AT3G05100.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:1424093-1426000
FORWARD LENGTH=1406
Length=1406
Score = 1570 bits (850), Expect = 0.0
Identities = 952/1003 (95%), Gaps = 0/1003 (0%)
Strand=Plus/Plus
Query 24 ttcttcttcttcATCGTCTCCGGCGATGCAGAAAGGAGTCTTTGTGTCCATGCCTGTACT 83
||| || ||||| || ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 71 TTCCTCCTCTTCTTCTTCTCCGGCGATGCAGAAAGGAATCTTTGTCTCCATGCCTGTACT 130
Query 84 CGTACTCACCGTTTCGTTTGCAGCTGCTGTCATCTTCCTCCTCTCGTCTTCTTTATCGTC 143
|| ||||||||||| |||| |||||||||| ||||||||||||| |||||||| || ||
Sbjct 131 TGTTCTCACCGTTTCCTTTGTAGCTGCTGTCTTCTTCCTCCTCTCTTCTTCTTTCTCCTC 190
Query 144 TTGCTCCTGTCCTGAATCTTTATCTTCTTCCCGGAACGACGCCGTTGAAGCTTCCGTCGG 203
|||||||||||||||| ||||||||||||||| || |||||||||||||||||| |||||
Sbjct 191 TTGCTCCTGTCCTGAAGCTTTATCTTCTTCCCCGACCGACGCCGTTGAAGCTTCTGTCGG 250
Query 204 TGGAAGCGGCGGTGATTTGAGATTTGAGGAGAGGATATCTCCGACGCAGGAGGATATTGA 263
||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 251 TGGAAGCGGTGGTGATGTGAGATTTGAGGACAGGATATCTCCGACGCAGGATGATATTGA 310
Query 264 GTGGGTTAGAGATCTCATTAGATCCAACGGTTTGCATATGCAGAAGAATGAGCTTCGAAA 323
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 311 GTGGGTTAGAGATCTGATTAGATCCAACGGTTTGCATATGCAGAAGAATGAGCTTCGTAA 370
Query 324 AGGGATTAATCCTCGCACTAGAGATCAACAACTCGCAGATCTGAAACAGTACAAGGGTAT 383
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 371 AGGGATTAATCCTCGCACTAGAGATCAACAACTTGCAGATCTGATACAGTACAAGGGTAT 430
Query 384 ATCCCATTACGAAGGAGATGAAGCAAACAACCACACAGCTCTTCCATGTCCTGGTGAGTT 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 ATCCCATTACGAAGGAGATGAAGCAAACAACCACACAGCTCTTCCATGTCCTGGTGAGTT 490
Query 444 ACTAGTTGAGCAGCATCACAGCAACTATGGTGAACCGTGGGCAGGTGGTCGCGATGTATT 503
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 491 ACTAGTTGAGCAGCATCACAGCAACTATGGTGAACCTTGGGCAGGTGGGCGCGATGTATT 550
Query 504 CGAGTTCTTGGCTGAATCATCCAATCTTAAACCAAACTCTCGTGTTCTTGAAATTGGATG 563
||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 551 CGAGTTCTTAGCTGAATCATCCAGTCTTAAACCAAACTCTCGTGTTCTAGAAATTGGATG 610
Query 564 CGGCACGTTACGTGTGGGTTTGCATTTCATCCGCTATCTCAATCCCCAACATTTTCACTG 623
||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 611 TGGCACGTTACGCGTGGGTTTGCATTTCATTCGCTATCTTAGTCCCCAACATTTTCACTG 670
Query 624 CCTTGAAAAGGACGAACTTTCTCTGATGGCTGCTTTAAGGTACGAGCTTCCATCTCAAGG 683
||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 671 CCTTGAAAAGGACGAGCTTTCTCTAATGGCTGCTTTGAGGTACGAGCTTCCATCACAAGG 730
Query 684 ACTTCTACATAAACGACCTCTTATAGTCAGAGGCGATGATATGGAATTCAGCAAGTTTGG 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 ACTTCTACATAAACGACCTCTTATAGTCAGAGGCGATGATATGGAATTCAGCAAGTTTGG 790
Query 744 TTCAGATACAACCTATGATCTGATATACGCAAGTGCAGTCTTTCTCCACATGCCTGATAA 803
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TTCAGATACAGCCTATGATCTGATATACGCAAGTGCAGTCTTTCTCCACATGCCTGATAA 850
Query 804 ACTCGTGTGGACTGGACTCGAAAGACTAGTAGACAAGTTGAAGCCCTACGACGGGAGAAT 863
||||||||||||||||||||||||| ||||||||| ||| || || ||||||||||||||
Sbjct 851 ACTCGTGTGGACTGGACTCGAAAGATTAGTAGACAGGTTAAAACCTTACGACGGGAGAAT 910
Query 864 CTTCGTGTCACATAACGTAAAGTTTTGTTCGCGGTTAGGACAAGACAAGTGTTCGCAGAA 923
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 911 CTTCGTGTCACATAACGTAAAGTTTTGTTCACGGTTAGGACAAGACAAGTGTTCTCAGAA 970
Query 924 GCTAGCAAGCTTAGGACTTGAGTATCTTGGAAAACAAACACATGATAGCTTGCTGTTTAA 983
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GCTAGCAAGTTTAGGACTTGAGTATCTTGGAAAACAAACACATGATAGCTTGCTGTTTAA 1030
Query 984 TCACTACGAGATCTGGTTCGGGTTTAGACGGTTCAAAACATAA 1026
|||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1031 TCACTATGAGATCTGGTTCGGGTTTAGACGGTTTAAAACATAA 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5