BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317405
Length=2664
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05430.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | ... 1687 0.0
AT5G27650.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | ... 667 0.0
> AT3G05430.1 | Symbols: | Tudor/PWWP/MBT superfamily protein
| chr3:1567625-1571072 FORWARD LENGTH=3053
Length=3053
Score = 1687 bits (913), Expect = 0.0
Identities = 1162/1278 (91%), Gaps = 34/1278 (3%)
Strand=Plus/Plus
Query 1107 TCATGAGAAATTTAAAGCAGTGAAATGCCTTAAACAAGAAGAGACTGGCACGAACTCTAG 1166
||| ||||||||| || || ||||| ||||||||||||| |||||||| || || |||||
Sbjct 1563 TCAGGAGAAATTTGAACCAATGAAAAGCCTTAAACAAGATGAGACTGGAACAAATTCTAG 1622
Query 1167 ATCTAACGAAGGCTCTCTCCAGCCTTTTATTGGTGGGAAATTTTCTGCAGGAGTTGGGAT 1226
||||||| || |||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1623 ATCTAACAAAAGCTCTCTCAAGCTTTTTAGTGGTGGGAAATTTTCTGCAGGAGTTGGGAT 1682
Query 1227 CAAGAAAGGCAATGTCGTGAAACGGTCTTCTGGCGAAATGGAATCTGAGAATGGTCCTCC 1286
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1683 CAAGAAAGGCAATGTCGTGAAACGGTCTTCTGGCGAAATGAAATCTGAGAATTGTCCTCC 1742
Query 1287 AGAGCCAAAGAAGAAGAAGAAAGAGTCTTTTTCAGAGCTGAACCGTGACACTCCAGATAA 1346
||| |||||||| ||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1743 AGAACCAAAGAAAAAGAAGAAAGAGTATGTGTCAGAGCTGAACCGTGACACTCCAGATAA 1802
Query 1347 GAGGAAAGCTTTATCTTCTGGGGAATCTTGGGCCAAGAAATCATCACAAGTGGATTCAGC 1406
||||||||| ||||||||||| ||| |||||||||||||||| |||||||| ||||||||
Sbjct 1803 GAGGAAAGCGTTATCTTCTGGAGAAGCTTGGGCCAAGAAATCGTCACAAGTAGATTCAGC 1862
Query 1407 AAAGAGACACTCCAATATGTTGATTGTGAGAAACTCTAAACTTGATGGTCTGCAGATGTT 1466
|||||||| |||||||||||||| | || | |||||||||||||||||| ||||
Sbjct 1863 AAAGAGACGCTCCAATATGTTGA---T-AG----T-GAAACTTGATGGTCTGCAGCTGTT 1913
Query 1467 GAGTAATTTGCAAGCTCTCTCGCTTGACTATTTCTTTGGATCCTCAGATAGAAGTTCTAT 1526
||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 1914 GAGTAATTTGCTAGCTCTCTCGCTTGACCCTCTCTTTGGATCCTCAGATAGAAGTTCTTT 1973
Query 1527 TAGAGCTGTAAGGCAGTTCTTTCTTCATTTCCGATCACATGTTTACCAGAAAAGCTTGGC 1586
||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1974 TAGAGTTATAAGGCAGTTCTTTTTTCATTTCCGATCACATGTTTACCAGAAAAGCTTGGC 2033
Query 1587 CACATCTCCGTT-CACTACAGTACTGTCAAAATCTGCGAAGACTTTGTGCAGAACTAATG 1645
||||||||| || | | ||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 2034 CACATCTCC-TTCCGCAACAAAACTGTCAAAATCTGCAAAGACTTTGTGCAGAGCTAATG 2092
Query 1646 AACCATCAAAGGCTGGGAGAAACCGCATATCGTCTGAGAATCAACAAGATGTCCCATCAA 1705
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2093 AACAATCAAAGGCTGGGAGAAACCGCATATCGTCTGACAGTCAACAAGATGTCCCATCAA 2152
Query 1706 CTAAGAAGCTAAAGAAAACCATTCAGTTCAAACCAATGGCTTCTGACAAGAAAACAAAGC 1765
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 2153 CTAAGAAGCTAAAGAAAACCATTCAGTTCAAACCACTGGCTTCTGACAAGAAAACAAACC 2212
Query 1766 AAGAAGCAACAAAGAGATCAACTCTTGCCACATTTAA-TCCAGTGAGAGACCAAGGTGGT 1824
|||| |||||||||||||||| |||||| || ||||| |||||| ||||||||| || |
Sbjct 2213 AAGATGCAACAAAGAGATCAAGTCTTGC-ACCTTTAAATCCAGTAAGAGACCAA--TG-T 2268
Query 1825 CCAGTCCCCATCAATGCCAAACCAGCTATAGTTCAATCA-GAAAAGAAGAAGGCCCCATC 1883
| ||| |||||||||||||||||||||||||||||| || |||||||||| || |||||
Sbjct 2269 CGAGTTCCCATCAATGCCAAACCAGCTATAGTTCAA-CAAGAAAAGAAGACGGGTCCATC 2327
Query 1884 TGCAATGGTAGTTGAGCCAACAATGCTGGTCATGATGTTTCCTCCTGGT-ACATCTCTCC 1942
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2328 TGCAATGGTAGTTGAGCCAACAATGCTGGTCATGATGTTTCCTCCTGGTGA-ATCTCTCC 2386
Query 1943 CTTCCACCGCTCTGCTTAAGGCGAGGTTTGGGCGCTTTGGACAGTTGGATCAATCAGCCA 2002
|||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2387 CTTCCATTGATCTGCTTAAGGCGAGGTTTGGACGCTTTGGACAGTTGGATCAATCAGCCA 2446
Query 2003 TCAGAGTTTCCTGGAAATCCTCGATATGCCGTGTTATCTTCAAGTATAAGCTCGATGCGC 2062
||||||||||||||||||||||||| ||||||||| |||| |||||| ||||||||||
Sbjct 2447 TCAGAGTTTCCTGGAAATCCTCGATCTGCCGTGTTGGCTTCCTGTATAAACTCGATGCGC 2506
Query 2063 AGACTGCCTTAAGATATGCATCAGGAAGCAACTCTATCTTTGGCAACGTGAATGTGACAT 2122
|||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||||
Sbjct 2507 AGACTGCCTTAAGATATGTATCAGGAAGCAAATCTCTCTTTGGCAATGTGAATGTGACAT 2566
Query 2123 ACTTTCTCCGCGACATGAAAGCTTCTTCTGCATCCGGAGATCATGAACAGAAGAAAGCCA 2182
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2567 ACTTTCTCCGTGACATGAAAGCTTCTTCTGCATCCGGAGATCATGAACTGAAGAAAGCCA 2626
Query 2183 AG-G-C--A-GAC-GA-A--CCAATCATTGAACCATTGAACCAG-TGGCTAGAGAAAGCA 2232
|| | | | ||| || | || |||| | |||||||||||||| | |||||| |||||
Sbjct 2627 AGAGGCCCAAGACAGACAAACCCATCACTAAACCATTGAACCAGCTA-CTAGAGCAAGCA 2685
Query 2233 CCGCCAGTTCACCAACCAAACATCCAGCTCAAGTCGTGTTTGAAAAAACCAGGCAATAAC 2292
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2686 CCGCCGGTTCACCAACCAAACATCCAGCTCAAGTCTTGTTTGAAAAAACCAGGCAATAAC 2745
Query 2293 GGTAATGGTAACCACAGAACAGTACGAGTGAAATTCATGTTGGGTGA-A--GAAACAGAG 2349
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 2746 CGTAATGGTAACCACAGAACAGTACGAGTGAAATTCATGTTGGGTGAGAAAGAAACAGAG 2805
Query 2350 ACACCATTTTCGGTTTCG 2367
|||||||||||||||||
Sbjct 2806 TCACCATTTTCGGTTTCG 2823
Score = 1657 bits (897), Expect = 0.0
Identities = 1047/1119 (94%), Gaps = 12/1119 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAAAATCGAGTTCCGGACTACAAATCTTACTTATCCGAGTTTGACCATTATGTT 60
|||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||||||
Sbjct 409 ATGGAGAAAAGGCGAGTTCCGGACTACAAATCTTTCTTATCCGAATTTGACGATTATGTT 468
Query 61 GCAAGCGAGAAAATGGGTTCTGGAAATT-GTAAGGCATTGTGCTATGGGTTTGAAGTGGG 119
|| || ||||||||||||||| |||||| | ||||||||| ||||||| |||||||||||
Sbjct 469 GCGAGGGAGAAAATGGGTTCTAGAAATTCG-AAGGCATTGAGCTATGGTTTTGAAGTGGG 527
Query 120 AGATATGGTATGGGGAAAGGTTAAGTCACATCCGTGGTGGCCAGGTCAGATATTCAATGA 179
||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 528 AGATATGGTTTGGGGAAAGGTAAAGTCACATCCATGGTGGCCAGGTCAAATATTCAATGA 587
Query 180 AGCGTTTGCGTCTCCCTCTGTTCGTCGTATGAAGAAGATGGGTTACGTTCTGGTTGCTTT 239
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 588 AGCTTTTGCGTCTCCCTCTGTTCGTCGTGTGAAGAAGATGGGTTACGTTCTGGTTGCTTT 647
Query 240 CTTTGGAGATAGTAGTTATGGTTGGTTTGATCCTGCTGAGCTTATTCCTTTTGAACCTCA 299
|||||| |||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 648 CTTTGGGGATAATAGTTATGGATGGTTCGATCCTGCTGAGCTTATCCCTTTTGAACCTCA 707
Query 300 TGTAGCA-GAGAATTCGCAGCAAACTAGTTCAGG-TCACTTTGCAAAAGCTGTGGAAGAA 357
||| | | ||||| || |||||||||||||| || |||||||||||||||||||||||||
Sbjct 708 TGT-GAAGGAGAAATCACAGCAAACTAGTTC-GGATCACTTTGCAAAAGCTGTGGAAGAA 765
Query 358 GCTATGGATGAACTAGGTAGAAGGTCAGCTCTTGGGTTGACTTGTAAGTGTCGGAATCAG 417
|||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 766 GCTATGAATGAAGTAGGTAGAAGGTCAGCTCTTGGCTTGACTTGTAAATGTCGGAATCAG 825
Query 418 TATAACTTTGGGCCTACTAATGTTCAAGGTTACTTTGCTGTAGACGTGCCTGATTATGAT 477
||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 826 TATAACTTTAGGCCTATTAATGCTCAAGGTTACTTTGCTGTAGACGTGCCTGATTACGAG 885
Query 478 CTCCAAGCTGTTTACTCTTCTAAGCAGATTCAGAAAGCTAGGGATAGTTTTTCATCTGTT 537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GTCCAAGCTATTTACTCTTCTAAGCAGATTCAGAAAGCTAGGGATAGTTTTTCATCTGTG 945
Query 538 CAAACTCTAGCTTTCGTGAAGCGGTGTGCATTAGCACCTCAAGAGTGTGATACAGACAGC 597
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CAAACTCTAGCTTTTGTGAAGCGGTGTGCATTAGCACCTCAAGAGTGTGATACAGACAGC 1005
Query 598 TTAAAGTCTTTCCAGAAGAAAGTAGCGGTTTGTGCATTCCGTAGGGCAGTGTTTGAGGAG 657
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1006 TTAAAGTCTTTCCAGAAGAAAGTAGCGGTTTGTGCATTCCGTAGAGCAGTGTTTGAGGAG 1065
Query 658 TTTGATGAAACATATGAACAAGCCTTCAGGGCAAGATCTGTATACTGTTTAGTGAAGACA 717
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1066 TTTGATGAAACATATGAACAAGCTTTCAGGGCAAGATCTGTATACTGTTTAATGAAGACA 1125
Query 718 CATGAACCATTTAATAGAGCACCCCTTCGAGTCCCCTTGACTGGCTCATTGGTCAGTGCA 777
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1126 CATGAACCACTTAATAGAGCACCCCTTCGAGTCCCCTTGAGTGGCTCATTGGTCAGTGCA 1185
Query 778 GAAACTCTGGGCAACCCAAAGAGCT-CTACAAAAGCTATGAATGTAAAGGATTCTACTAA 836
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1186 GAAACTCTGGGCAACCCAAAGAGCTAC-ACAAAAGCTATGAATGTAAAGGATTCTACTAA 1244
Query 837 ACATGaaaaaaaTCTTCCCAAAAGAAGAGAGGGAGCTGGTGATATGACAGTTCAATTTGG 896
||| || ||| ||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 1245 ACAAGACAAATATCTTCCAAAAAGAAGAGAAGAAGCTGGTGATATGACAGTTCAATTTGG 1304
Query 897 CCAGGTCCAAGAATCTTCTCAGATTCAGGGCAGCAACAGATCTTCAGCTGGGGATCATGT 956
|||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||| | |
Sbjct 1305 CCAGGTCCAAGAATCTTCTCAGTTTCAGGGCATCAACGGATCTTCAGCTTGGGATCGTCT 1364
Query 957 ACTGCAGAGAAGGACTCCACATAC-CCAAACTCCCAGGAAACATGAGCAGACCGGGCTTG 1015
||| ||||||||||||||| | | ||||||||||||||||||||||||||| |||||||
Sbjct 1365 ACTCCAGAGAAGGACTCCATGT-CTCCAAACTCCCAGGAAACATGAGCAGACTGGGCTTG 1423
Query 1016 TCAGCATGAACTTCACCTCTTCAAGTGGTAATATTCCTGGAAAGAAATCCTCTGTTTCAA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 TCAGCATGAACTTCACCTCTTCAAGTGGTAATATTCCTGGAAAGAAATCCTCTGTTTCAA 1483
Query 1076 AGCTCTCTCGGGATGATGACAAGGGTTTCA-CTCATGAG 1113
|||||||||| ||||||||||||||||| | |||| |||
Sbjct 1484 AGCTCTCTCGTGATGATGACAAGGGTTT-AGCTCAAGAG 1521
Score = 281 bits (152), Expect = 2e-74
Identities = 183/198 (92%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 2468 CGATTCTTCCTCTCTCTTCACAAGACTCAGAACCAAAGCCTGTTAATAATCAAGTGAACC 2527
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 2822 CGATTCTTCCTCTCTCTTCACAAGACTCAGAACCAAAGCCTGTAAATAACCAAGTGGACC 2881
Query 2528 ACGTCGAGCCACCTA-TAAACCCGTCGCAGCTTACCGTGGACATTTCCCTGCAGATGATG 2586
||||||||||||| | || ||||||| ||||||| |||||||| |||||||||||||||
Sbjct 2882 ACGTCGAGCCACC-ACTAGACCCGTCACAGCTTAAGGTGGACATCTCCCTGCAGATGATG 2940
Query 2587 GAGCTGTTAACAAGGTGTAACGATGTTGTGTCTAACGTCACGTGTTTGTTGGGTTACGTC 2646
||||||||||||||||||||||||| |||| | ||||||||| |||||||||||||||||
Sbjct 2941 GAGCTGTTAACAAGGTGTAACGATGCTGTGGCCAACGTCACGGGTTTGTTGGGTTACGTC 3000
Query 2647 CCTTATCATTTCTTATGA 2664
|||||||||| |||||||
Sbjct 3001 CCTTATCATTCCTTATGA 3018
> AT5G27650.1 | Symbols: | Tudor/PWWP/MBT superfamily protein
| chr5:9785407-9789232 FORWARD LENGTH=3461
Length=3461
Score = 667 bits (361), Expect = 0.0
Identities = 886/1133 (78%), Gaps = 61/1133 (5%)
Strand=Plus/Plus
Query 4 GAGAAAAATCGAGTTCCGGACTACAAATCT-TACTTATCCGAGTTTGACCATTATGTTGC 62
|||||||| ||||| |||| || |||||| | ||||| |||||||| ||||||||||
Sbjct 510 GAGAAAAAAGGAGTTTCGGATTATAAATCTCT-TTTATCTGAGTTTGATGATTATGTTGC 568
Query 63 AAGCGAGAAAATGGGTTCTGGAAATT-GTAAGGCATTGTGCTATGGGTTTGAAGTGGGAG 121
||| |||||||||||||||||| || | | ||||||| | |||||||||||||| ||||
Sbjct 569 AAGTGAGAAAATGGGTTCTGGAGTTTCG-AGGGCATTGAGTTATGGGTTTGAAGTTGGAG 627
Query 122 ATATGGTATGGGGAAAGGTTAAGTCACATCCGTGGTGGCCAGGTCAGATATTCAATGAAG 181
|| |||| ||||||||||| ||||| ||||| |||||||| ||||| |||||||||||||
Sbjct 628 ATTTGGTTTGGGGAAAGGTAAAGTCTCATCCTTGGTGGCCTGGTCATATATTCAATGAAG 687
Query 182 CGTTTGCGTCTCCCTCTGTTCGTCGTATGAAGAAGATGGGTTACGTTCTGGTTGC-TTTC 240
| ||||||||||| |||||||||||||||| || ||| | | | ||||| ||||| |||
Sbjct 688 CTTTTGCGTCTCCTTCTGTTCGTCGTATGAGGAGGATTGATCATGTTCTTGTTGCGTTT- 746
Query 241 TTTGGAGATAGTAGTTATGGTTGGTTTGATCCTGCTGAGCTTATTCCTTTTGAACCTCAT 300
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 747 TTCGGTGATAGTAGTTATGGTTGGTTTGATCCTGCTGAGCTTATTCCTTTCGAACCGAAT 806
Query 301 GTAGCAG-AGAATTCGCAGCAAACTAGTT-C-AGGTCACTTTGCAAAAGCTGTGGAAGAA 357
||| || |||| || ||||| || ||| | | | || |||| | ||||||||| |||
Sbjct 807 TTAG-AGGAGAAATCACAGCAGACG-GTTTCGAAG-CATTTTGTGAGAGCTGTGGAGGAA 863
Query 358 GCTATGGATGAA-CTAGGTAGAAGGTCAGCTCTTGGGTTGACTTGTAAGTGTCGGAATCA 416
|| | |||||| | || |||||||||||||||||| ||||||||||| ||||||||||
Sbjct 864 GCCAAGGATGAGGCGAG-TAGAAGGTCAGCTCTTGGTTTGACTTGTAAATGTCGGAATCC 922
Query 417 GTATAACTTTGGGCCTACTAATGTTCAAGGTTACTTTGCTGTAGACGTGCCTGATTATGA 476
||||||||| |||||| |||||| ||| |||||||||||| || ||||||||||| ||
Sbjct 923 TTATAACTTTAGGCCTAGTAATGTGGAAGATTACTTTGCTGTTGATGTGCCTGATTACGA 982
Query 477 TCTCCAAGCTGTTTACTCT-TCTAAGCAGATTCAGAAAGCTAGGGATA-GTTTTTCATCT 534
|| ||||| ||||||||| | | | |||||| |||| ||||||||| |||||| | |
Sbjct 983 GCTTCAAGCCGTTTACTCTGT-TGATCAGATTAAGAATTCTAGGGATAAGTTTTT-ACCC 1040
Query 535 GTTCAAAC--TCTAGCTTTCGTGAAGCGGTGTG-CATTAGCACCTCAAGAGTGTGATACA 591
| | |||| | | | ||| ||||||| | || | ||||||||||||||||||||| ||
Sbjct 1041 GCTGAAACCATTTCG-TTT-GTGAAGCAAT-TGGCGTTAGCACCTCAAGAGTGTGATCCA 1097
Query 592 GACAGCTTAAAGTCTT-TCCAGAAGAAAGTAGCGGTTTGTGCATTCCGTAGGGCAGTGTT 650
||||| ||||||| || | ||||||||| || ||||| ||| ||||| | | |||||||
Sbjct 1098 GACAGTTTAAAGT-TTATGAAGAAGAAAGCAGTGGTTTTTGCTTTCCGCAAGTCAGTGTT 1156
Query 651 TGAGGAGTTTGATGAAACATATGAACAAGCCTTCAGGG-CAAGATCTGTATACTGTTTAG 709
|||||||||||||||||| |||| ||| ||||| ||| ||| ||| | ||| ||
Sbjct 1157 TGAGGAGTTTGATGAAACTTATGCACAGGCCTTT-GGGACAAAATCACCCCGCAGTTCAG 1215
Query 710 TGAAG-ACACATG-AACCATT-TAATAGAGCACC-CCTTCGAG-TCCCCTTGACTGGCTC 764
||| | || | || |||| | |||||||||||| ||| |||| |||| |||| |||| |
Sbjct 1216 TGA-GTACGC-TGGAACC-TCATAATAGAGCACCGCCT-CGAGCTCCC-TTGAGTGGCCC 1270
Query 765 ATTGGTCAGT-GCAGAAACTCTGGGCAACCCAAAGAGCTCTACAAAAGCTATGAATGTAA 823
| |||||| | |||||||| || || ||| |||||||||| |||| | | || || |
Sbjct 1271 ACTGGTCA-TAGCAGAAACGCTAGGTGACCTTAAGAGCTCTAAAAAACCCACAAAGGTTA 1329
Query 824 AGGAT-TCTACTAAACATGaaaaaaaTCTTCCCAAAAGAAGAGAGGGAGCTGGTGATATG 882
||| | |||| ||| | || || |||||| |||| |||| || | ||||||||||| |
Sbjct 1330 AGG-TCTCTAAAAAAAAAGACAAGTATCTTCTCAAACGAAGGGATGAAGCTGGTGATAAG 1388
Query 883 ACAGTTCAATTTGGCCAGGTCCAAG-AA-T-C------TTCTCAGATTCAGGGCAGCAAC 933
| ||||| |||||| | | ||| || | | |||||| || ||||| | |
Sbjct 1389 TCTGTTCAGTTTGGCGAAATTGAAGCAAGTTCAGAAGCTTCTCATATCCAGGGAATTGAT 1448
Query 934 AGATCTTCAGCTGGGGATCATGTACTGCAGAGAAG-GACTCC-ACA-TACCCAAACTCCC 990
|||||| | ||||||| || ||||||||||| | |||| || | | |||||||
Sbjct 1449 GGATCTTTGGATGGGGATTTTGGGCTGCAGAGAAGAG-CTCCGACGCTTC--AAACTCCA 1505
Query 991 AGGAAACATGAGCAGACCGGGCTTGTCAGCATGAACTTCACCTCTTCAAGTGGTAA-TAT 1049
| |||| ||||| || | ||| | ||||||||| | || ||||||||| | | |||
Sbjct 1506 ATGAAAGATGAGAAGTCTGGGATCGTCAGCATGGATTTTGCCTCTTCAAATAC-AGCTAT 1564
Query 1050 TCCTGG-AAAGAAATCCTCTGTTTCAAAGCTCTCTCGGGATGATGACAAGGGT 1101
|||||| |||||| | || | |||||||| ||||| ||||| || ||||||
Sbjct 1565 TCCTGGTAAAGAATTT-TCAGCTTCAAAGCCCTCTCTTGATGAAGAAAAGGGT 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132290228691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5