BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317406
Length=2691
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05470.1 | Symbols: | Actin-binding FH2 (formin homology 2)... 4100 0.0
> AT3G05470.1 | Symbols: | Actin-binding FH2 (formin homology
2) family protein | chr3:1579667-1582547 REVERSE LENGTH=2655
Length=2655
Score = 4100 bits (2220), Expect = 0.0
Identities = 2542/2693 (94%), Gaps = 40/2693 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTATTTTCGTCAGATTTTTCTCATGATCATTGTAGTTTCGTTACACTGCTGCAAA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGTTTATTTTCGTCAGATTTTTCTCATGATCATTGTAGTTTCATTACACTGCTGCAAA 60
Query 61 GGTCGATTCTTTTGCATTGTTGCTAATGCTAAAGAGCTTGATGATTGGAAGGTGTTAACG 120
| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GTTAGATTCTTTTGCATTGTTGCTAATGCTAAAGAGCTTGATGACTGGAAGGTGTTAACG 120
Query 121 GTGGTAAACGGTGAGAGATACCGAACCCAAGTCGGAAAATACGCCGGAGAAGACGGAGGC 180
|||| ||||||||| |||||||||||||| ||||||| ||||||||||||||| || |||
Sbjct 121 GTGGAAAACGGTGAAAGATACCGAACCCATGTCGGAAGATACGCCGGAGAAGAGGGCGGC 180
Query 181 GAGAAGATAAAGCTTCGAGTTTTGGAAAAGTTTCGAGCTTTACTCGATTTGATAAAACCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 GAGAAGATAAAGCTTCGAGTTTTGGAAAAGTTTCGAGCTTTACTCGATTTGATTAAACCC 240
Query 241 TCTACTTCCCGGAGAAGAAATCTCGCCGAGGCTGCTTCTTTCTCTCCTTGGCCGGCGCCG 300
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TCTACTTCACGGAGAAGAAATCTCGCCGAGTCTGCTTCTTTCTCTCCTTGGCCGGCGCCG 300
Query 301 TCTCCGTCTCCGTTTCCCAGCGGTGGTCCAATCGAATCTCCGGCATATCCTCCAGCTCCT 360
|| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TCGCCGTCTCCGTTTCCCAACGGTGGTCCAATCGAATCTCCGGCGTATCCTCCAGCTCCT 360
Query 361 CCACGGCCGATTCCTCCACATCTCCGTCGTCCGTTAGCTCAACGGACCCATCCATTGAAA 420
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 361 CCACGACCGATTCCTCCACATCTCCGTCGTCCGTTACCTCAACGGACCCATCCATTGGAA 420
Query 421 GAACCCGAGATTCAAAGGGGAAAACACGAGAAAGGAGGAACACTTAAGAAGATTCTTGTA 480
|||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||
Sbjct 421 CAACCCGAGATTCAACGGCGAAAACATGAGAAAGGAGGAACATTTAAGAAGATTCTTGTA 480
Query 481 CCTGTCGTTGCTTCTACAGCTTCTGGAATCGGTTTCGTAGTTTGTGTCGTTGGAGTGTTC 540
|||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 481 CCTGTCGTTGCTTCCACAGCTTCTGCAATCGGTTTCGTAGTATGTGTCGTTGGAGTGTTC 540
Query 541 TGTTTCTGCGCGAGAAGAAAACGGAAGAA-GAACGGTAAAACGCTGTCGTTTAAAAGGAA 599
||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 541 TGTCTCTGCGCGAGAAGAAAAAGGAA-AATGAACGGTAAAACGCTGTCGTTTAAAAGGAA 599
Query 600 AAAGGGCAAACCTCAAAACTCGACGAGGAAGGTTAGTGTAAATCCTACTCTCGATTTCTT 659
|||||| ||| |||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 AAAGGGAAAATCTCAAAGCTCGACGAGGAAGGTTAGTGTAAACCCTACTCTCGATTTCTT 659
Query 660 GTACCTAAACTCACTGGGAGTTGATTTGGAGAGACAAAACTCTGTTTCTGTTAAAGAAAT 719
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 GTACCTAAACTCACTAGGAGTTGACTTGGAGAGACAAAACTCTGTTTCTGTTAAAGAAAT 719
Query 720 ACGAGAAACCGAGAAGGATTTGAACGAG-AACAATAGTGGATTACTTGAAGAAGAGGTAA 778
||||||||| |||||||||||||||| | | |||| ||||||| ||||||||||||||||
Sbjct 720 ACGAGAAACAGAGAAGGATTTGAACG-GTATCAATGGTGGATTGCTTGAAGAAGAGGTAA 778
Query 779 AGAGAAGTATAGAAACAGAGATTTCGCAAGATTGGGACAATGCTAGTAGTTATTCAACTA 838
|||||||||||||||||||||| || || |||||||||||||||||||||||||| || |
Sbjct 779 AGAGAAGTATAGAAACAGAGATCTCACATGATTGGGACAATGCTAGTAGTTATTCGACCA 838
Query 839 AAGAGATTGTGTCGGTGCACGAAAATGATGATGAACAAACAGTAAACTCTGTTTCTGTTC 898
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 839 AAGAGATTGTGTCGGTGCACGAAAATGATGAAGAACAAACAGTAAACTCTGTTTCTG-T- 896
Query 899 CTCCTGTTGTAATCAATGGATGCAATGATTCTTCAGACGATGATGAGTCTTTTCATTCCG 958
||||||||| | | || ||||||||||||||||||||||||||||||||||||||
Sbjct 897 -TCCTGTTGT--T--GT-AAT-CAATGATTCTTCAGACGATGATGAGTCTTTTCATTCCG 949
Query 959 TTGGTGGTGGCTCTCAGTATTCAAATCCAAGATTGTCAAATGCTTCCTCTGCTTCTAGTA 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 950 TTGGTGGTGGCTCTCAGTATTCAAATCCAAGATTGTCAAATGCTTCCTCTGCTTCTGGTA 1009
Query 1019 GTGTCAACGTAGGATCTTCTCAACGCTTCTCAGAACACAAATTGGATATTCCTGAATGTT 1078
|||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GTGTTAACGTTGGTTCCTCTCAACGCTTCTCAGAACACAAATTGGATATTCCTGAATGTT 1069
Query 1079 CCAGAAACGACTTCGGAGTCTCTGTCTCTGCTCCACCACCGCCGCCACCTCCACCGCCTC 1138
| |||| |||||||||| ||||||| |||||||||||| || ||||||||||||||||
Sbjct 1070 CTAGAAGCGACTTCGGAATCTCTGTATCTGCTCCACCA---CCACCACCTCCACCGCCTC 1126
Query 1139 CACCGCTTACGCAATTCTCAAACAAACGTCTTCACACTCTGTCTTCGCCAGAAACCGCTA 1198
|||||||| |||| ||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1127 CACCGCTTCCGCAGTTCTCTAACAAACGTATTCACACCCTGTCTTCGCCAGAAACCGCTA 1186
Query 1199 ATCTTCAAACGCTTTCGTCGCAATTATGTGAAAAACTTTGTGCTTCTTCCTCGAAGACAA 1258
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 ATCTTCAGACGCTTTCGTCGCAATTATGTGAAAAACTTTGTGCTTCTTCCTCGAAGACAA 1246
Query 1259 GCTTTCCGATCAATGTACCAAATTCTCAAGAAAATGGTTCTAAATCTCTACCGCATCCAC 1318
|||||||||||||||||||||| | || || | ||||| |||||
Sbjct 1247 GCTTTCCGATCAATGTACCAAA-T-TC-----------TC---A-----ACCGCGTCCAC 1285
Query 1319 CGCCACCACCGCCGCTACCGCCACAACAGCTTAAATTAGCTGGAATGAACAAAACGCCTC 1378
||||||||||||| | ||||||||||||||| || |||||||||| || ||||||||||
Sbjct 1286 CGCCACCACCGCC-C--CCGCCACAACAGCTTCAAGTAGCTGGAATTAATAAAACGCCTC 1342
Query 1379 CACCGCCATTGTCTCTTGATTTTTCTGAGCGTAGACCATTAGGCAAAGACGGAGCTCCTT 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1343 CACCGCCATTGTCTCTTGATTTTTCTGAGCGTAGACCATTAGGCAAAGACGGAGCTCCAT 1402
Query 1439 TGCCTAAACTGAAGCCTCTTCACTGGGATAAAGTCAGGGCTACACCAGACCGGACTATGG 1498
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 TGCCTAAACTGAAGCCACTTCACTGGGATAAAGTCAGGGCTACACCAGACCGGACTATGG 1462
Query 1499 TTTGGGATAAGCTCAGAACAAGCTCTTTCGAATTAGACGAAGAGATGATTGAGTCACTGT 1558
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1463 TTTGGGATAAGCTCAGAACAAGCTCTTTTGAATTAGACGAAGAGATGATTGAGTCACTGT 1522
Query 1559 TTGGATATACGATGCAAAGCTCAACGAAGAATGAGGAAGGGAAGAGCAAAACTCCATCAC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 TTGGATATACGATGCAAAGCTCAACGAAGAATGAGGAAGGGAAGAGCAAAACTCCATCAC 1582
Query 1619 CAGGGAAACACCTTCTTGAACCTAAGAGACTTCAGAACTTTACCATTCTCTTGAAAGCTC 1678
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1583 CAGGGAAACACCTTCTTGAACCTAAAAGACTTCAGAATTTTACCATTCTCTTGAAAGCTC 1642
Query 1679 TCAACGCAACCGCGGACCAAATCTGCTCTGCCTTGGGGAAAGGGGAAGGCTTGTGTTTAC 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TCAACGCAACCGCGGACCAAATCTGCTCTGCCTTGGGGAAAGGGGAAGGCTTGTGTTTAC 1702
Query 1739 AGCAACTAGAAGCGTTGGTGAAGATGGTGCCGACTAAAGAAGAAGAGTTGAAGCTGTGTA 1798
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1703 AGCAACTAGAAGCGTTGGTGAAGATGGTGCCGACTAAAGAAGAAGAGTTGAAGCTGCGTA 1762
Query 1799 GCTACAAAGGAGCCGTGGATGAGCTTGGATCAGCTGAGAAATTTCTCAGAGCTCTTGTTG 1858
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1763 GCTACAAAGGAGCCGTGGATGAGCTTGGCTCAGCTGAGAAGTTTCTCAGAGCTCTTGTTG 1822
Query 1859 GAGTTCCATTTGCGTTTCAGAGAGCTGAAGCGATGCTTTATAGAGAAACGTTTGAAGATG 1918
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1823 GAGTTCCATTTGCGTTTCAGAGAGCTGAAGCAATGCTTTATAGAGAAACGTTTGAAGATG 1882
Query 1919 AAGTAGTTCATCTCAGAAACTCCTTCTCCATGCTTGAGGAAGCTTGCAAGGAGCTTAAGT 1978
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1883 AAGTGGTTCATCTCAGAAACTCCTTCTCCATGCTTGAGGAAGCTTGCAAGGAGCTTAAAT 1942
Query 1979 CAAGCAGGTTATTTTTGAAGCTTTTAGAAGCTGTTCTTAAGACTGGAAACAGGATGAATG 2038
||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct 1943 CAAGCAGGTTATTCTTGAAGCTTCTAGAAGCTGTCCTAAAGACTGGAAACAGGATGAATG 2002
Query 2039 TAGGAACCATACGTGGTGGTGCAAAAGCCTTCAAGCTCGATGCTCTGCTCAAGCTCTCTG 2098
||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 2003 TAGGAACCATACGCGGTGGTGCAAAAGCATTCAAGCTCGATGCTCTGCTTAAACTCTCTG 2062
Query 2099 ATGTTAAAGGCACAGATGGAAAGACCACTCTGCTTCATTTTGTTGTGCAAGAGATCTCTA 2158
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2063 ATGTTAAAGGCACAGATGGAAAGACTACTCTGCTTCATTTTGTTGTACAAGAGATCTCTA 2122
Query 2159 GGTCTGAAGGAATCAGGGTTTCAGACAGCATCATGGGACGGATCATGAACCAGAGATCAA 2218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2123 GGTCTGAAGGAATCAGGGTTTCAGACAGCATCATGGGACGGATCATGAACCAGAGATCAA 2182
Query 2219 ACAAGAACAGAACACCTGAGGAAAAAGAGGAAGATTACAGAAGGATGGGGCTCGATCTCG 2278
|||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2183 ACAAGAACCGAACACCTGAGGAGAAAGAGGAGGATTACAGAAGGATGGGGCTCGATCTCG 2242
Query 2279 TTTCGGGTCTAAACACAGAGCTAAGAAACGTGAAGAAGACGGCAACTATTGATCTGGAAG 2338
| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 2243 TCTCGGGTCTAAACACAGAGCTACGAAACGTGAAGAAGACGGCAACGATTGATCTGGAAG 2302
Query 2339 GTCTTGTTAGCTCGGTGTCTAACCTGAGAGACGGGTTGGGGCAATTGAGGTGTCTAGCGA 2398
||||||||| ||||||||| || |||||||| ||||||||||| ||||| ||||| ||||
Sbjct 2303 GTCTTGTTACCTCGGTGTCCAATCTGAGAGATGGGTTGGGGCAGTTGAGCTGTCTTGCGA 2362
Query 2399 GTGAGAAGCTGAAAGGGGACGAAGAAAACAGAGCATTTGTTAGTTCGATGAGCTCGTTCT 2458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2363 GTGAGAAGCTGAAAGGGGACGAAGAAAACAGAGCATTTGTTAGTTCGATGAGCTCGTTTT 2422
Query 2459 TGAGATACggagagaagagcttggaggagttaagggaagacgagaagaggataatggaga 2518
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2423 TGAGATACGGCGAGAAGAGCTTGGAGGAATTGAGGGAAGACGAGAAGAGGATAATGGAGA 2482
Query 2519 gggttggagagaTTGCAGAGTATTTTCATGGAGATGTGAGAGGAGATGACAAGAACCCGT 2578
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2483 GGGTTGGAGAGATTGCAGAGTATTTTCATGGAGATGTGAGAGGAGATGAGAAGAACCCAT 2542
Query 2579 TGAGGATCTTTGTGATTGTAAGGGATTTTCTGGGGATGTTGGATCATGTATGTAGAGAAT 2638
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 2543 TGAGGATCTTTGTGATTGTAAGGGATTTTCTAGGGATGTTGGATCATGTTTGTAGAGAAT 2602
Query 2639 TGAGGTGTGTTAGGGTTCCCAATAGCCCTAGCCCTTTGGCTCCGTTTCGATGA 2691
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2603 TGAGGTGTGTTAGGGTTCCCAATAGCCCTAGCCCTTTGGCTCCGTTTCGATGA 2655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133644736152
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5