BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317410
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05510.1 | Symbols: | Phospholipid/glycerol acyltransferase... 2056 0.0
> AT3G05510.1 | Symbols: | Phospholipid/glycerol acyltransferase
family protein | chr3:1595394-1598271 FORWARD LENGTH=1726
Length=1726
Score = 2056 bits (1113), Expect = 0.0
Identities = 1267/1340 (95%), Gaps = 15/1340 (1%)
Strand=Plus/Plus
Query 1 ATGGGAATTCAATTCGTCGACAAGGCAGATCTATGGAAGAGTGCACTGTTGTTGAATCTT 60
||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 183 ATGGGAATTCATTTTGTTGACAAGGCAGATCTATGGAAGAGTGCACTGTTGTTCAATCTT 242
Query 61 AAGCTTCGTGATCGATTTAGAATCGCCGTCGACGACCACCGTGGTCGAGCTGCGGTTTTC 120
|| ||||||||||||||| ||||||||||||| || ||||||||||||||| ||||||||
Sbjct 243 AAACTTCGTGATCGATTTCGAATCGCCGTCGATGATCACCGTGGTCGAGCTACGGTTTTC 302
Query 121 TCACCGGATGGTTACTTCTCTTCCACTATCCACCGCTGGGTGACTCTG-TTCCGGAACTT 179
||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 303 TCACCGGATGGTTGCTTCTCTTCCACTATCCACCGCTGGGTGACTC-GATTCCGGAACTT 361
Query 180 TCGCCGGGAGTCTCTCCCTTCTCCACCCGCTTTTTATCGCAGACGAGTTTCTAAAGACTT 239
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 362 TCGCCGGGAGTCTCTCCCTTCTCCACCGGCTTTTTATCGCAGACGAGTTTCTAAGGACTT 421
Query 240 AACGGCAGAAGAAGAGTCTGCTCTTTTCCGGATGCTTCAAGCTGTGGCTGTTCCCCTTAT 299
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 422 AACGGCAGAAGAAGAGTCTGCTCTTTTCCGGATGCTACAAACTGTGGCTGTTCCCCTTAT 481
Query 300 TGGAAATGCTTGTCATGTTTTCATGAATGGTTTTAACCGTGTTCAGGTGTATGGTTTAGA 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 482 TGGAAATGCTTGTCATGTTTTCATGAATGGTTTTAACCGTGTTCAGGTATATGGTTTAGA 541
Query 360 GAAATTGCATGATGCTTTACTCAACAGACCAAAGAACAAGCCTCTTGTAACGGTGAGCAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GAAATTGCATGATGCTTTACTCAACAGACCAAAGAACAAGCCTCTTGTAACGGTGAGCAA 601
Query 420 TCATGTTGCATCTGTGGATGATCCATTTGTCATTGCTTCGTTACTTCCGCCTAAACTTCT 479
||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct 602 TCATGTTGCATCTGTGGATGATCCATTTGTCATTGCTTCATTACTTCCACCTAAATTTCT 661
Query 480 ACTTGATGCCCGTAATTTGAGGTGGACGCTTTGTGCTACAGATAGATGCTTTAAAAACCC 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 662 ACTTGATGCCCGTAATTTGAGGTGGACGCTCTGTGCTACAGATAGATGCTTTAAAAACCC 721
Query 540 TGTAACTTCAGCTTTCTTTCGATCTGTCAAAGTTTTGCCAGTTTCTCGTGGTGAAGGAAT 599
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 722 TGTAACTTCAGCTTTCTCTCGATCTGTCAAAGTTTTGCCAATTTCTCGTGGTGAAGGAAT 781
Query 600 TTATCAGCAGGGAATGGACATTGCGATTTCGAAATTAAACAGCGGAGGGTGGGTTCACAT 659
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 782 TTATCAGCAGGGAATGGACATTGCGATTTCGAAATTGAACAACGGAGGGTGGGTTCACAT 841
Query 660 CTTTCCAGAAGGCAGTCGCTCCCGGGATGGTGGGAAGACTATGGGCTCAGCGAAGAGGGG 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 842 CTTTCCAGAAGGCAGTCGCTCCCGGGATGGTGGAAAGACTATGGGCTCAGCGAAGAGGGG 901
Query 720 TATCGGAAGGTTGATTTTGGACGCAGATACTCTCCCTATGGTTGTTCCATTTGTGCATAC 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 902 TATCGGAAGGTTGATTTTGGACGCAGATACTCTCCCTATGGTTGTTCCTTTTGTGCATAC 961
Query 780 TGGTATGCAGGACATAATGCCAGTTGGAGCCAGTGTTCCACGGATTGGCAAGACAGTGAC 839
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 962 TGGTATGCAGGATATAATGCCAGTTGGAGCTAGTGTTCCACGGATTGGCAAGACAGTGAC 1021
Query 840 AGTGATCATTGGAGACCCTATTCATTTTAATGACATTCTCAGCACTGAAGGAGCCAAACA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1022 AGTGATCATTGGAGACCCTATTCATTTTAATGACATTCTCAGCACTGAAGGAGCCCAACA 1081
Query 900 CGTCTCAAGGAAACACTTGTATGACGCAGTTTCGTCCAGAATTGGGCACAGACTGTATGA 959
|||||||||||||||| |||||||||| ||||||||||||||||| || |||||||| ||
Sbjct 1082 CGTCTCAAGGAAACACCTGTATGACGCCGTTTCGTCCAGAATTGGACAAAGACTGTACGA 1141
Query 960 TTTAAAAGTACAAGTCGATAGGGTATCTCTAGAACAACAATCTATGATGTCACACGACGC 1019
|||||||| |||||| ||||| |||| | |||||||||||||||||||||||||| | ||
Sbjct 1142 TTTAAAAGCACAAGTTGATAGAGTATATATAGAACAACAATCTATGATGTCACACAATGC 1201
Query 1020 CAAAACATCCTCGGACCGTGCTGCTGAGATCTTCCATAGAGTCGATTGGGACTCATTTGG 1079
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1202 CAAAACACCCTCGGACCGTGCTGCTGAGATCTTTCATAGAGTCGATTGGGACTCATTTGG 1261
Query 1080 GATGGGAGCACAGTTCTCAGAAGAATCATCAGCCAGTAGTATTAAACTGATTGCCCAAAC 1139
|||||||||||| || ||||||||||||||| ||||||||| || | ||||| |||||
Sbjct 1262 GATGGGAGCACAATTTTCAGAAGAATCATCACCCAGTAGTA--AACC-GATTGGCCAAAG 1318
Query 1140 CGATGATGGCAATT-TCAGATCTCCCAAAAGGAGAGTCTCATCCGAAGGAGGGATCAGCT 1198
||||||| ||| || |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1319 CGATGATCGCA-TTGTCAGATCTCCCAAAAGGAGAGTCTCACCCGAAGGAGGGGTCAGCT 1377
Query 1199 TGAAGATTAAGAAGTTCATGGACTCTACGGAGATGATGGG-TTTCGCGGCTAGAGGGTTG 1257
|||||||||||||| |||||||||| || ||||||||||| ||| ||||||||||||||
Sbjct 1378 TGAAGATTAAGAAGCTCATGGACTCAACCGAGATGATGGGGTTT-GCGGCTAGAGGGTTA 1436
Query 1258 TTTATGAACGAGTACAAGAGTCGGGGTGAATCTGCCAATGTTGGTCAAATCCGGCCTTTA 1317
| |||||||||||||||||||||| ||||||||||||||||||| | ||||||||
Sbjct 1437 CTAATGAACGAGTACAAGAGTCGGGTTGAATCTGCCAATGTTGGT-A-----GGCCTTTA 1490
Query 1318 AAGGCTTGGAGAGAGTATTT 1337
||||||||||||||||||||
Sbjct 1491 AAGGCTTGGAGAGAGTATTT 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68272741200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5