BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317420
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05600.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1646 0.0
> AT3G05600.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:1623244-1624763 REVERSE LENGTH=1296
Length=1296
Score = 1646 bits (891), Expect = 0.0
Identities = 961/996 (96%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGGAATTGATCATAGAATGGTGAGTGTCAATGGCATAACAATGCACATTGCCGAG 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATGGAAGGAATCGATCATAGAATGGTGAGTGTCAATGGCATAACAATGCACATTGCCGAG 119
Query 61 AAAGGTCCCAAAGAAGGACCTGTGGTGCTTCTCCTCCATGGATTCCCAGATCTCTGGTAC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 AAAGGTCCCAAAGAAGGACCTGTGGTGCTTCTCCTCCATGGATTCCCTGATCTCTGGTAC 179
Query 121 ACGTGGCGTCACCAGATTTGTGGGTTATCATCTCTAGGTTACCGCGCTGTAGCTCCAGAC 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACGTGGCGTCACCAGATTAGTGGGTTATCATCTCTAGGTTACCGCGCTGTAGCTCCAGAC 239
Query 181 CTCCGAGGTTACGGAGACTCTGATTCACCGGAGTCTTTCTCCGAGTACACGTGTCTTAAC 240
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 CTCCGAGGCTACGGAGACTCTGATTCGCCGGAGTCTTTCTCCGAGTACACGTGTCTTAAC 299
Query 241 GTCGTTGGGGACCTCGTAGCTCTTCTGGACAGTGTTGCTGGAGATCAAGAGAAGGTGTTT 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 GTCGTTGGGGACCTCGTAGCTCTTCTGGACAGTGTTGCTGGAAATCAAGAGAAGGTGTTT 359
Query 301 CTGGTCGGTCATGATTGGGGAGCCATTATTGGATGGTTCCTCTGTTTGTTTCGACCTGAG 360
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 360 CTGGTCGGTCATGATTGGGGAGCCATTATCGGATGGTTTCTCTGTTTGTTTCGACCTGAA 419
Query 361 AAGATTAAGGGCTTTGTGTGTTTGAGTGTGCCGTATAGATCAAGAAACCCTTTAGTCAAG 420
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 420 AAGATTAACGGCTTTGTGTGTTTGAGTGTGCCGTATAGATCAAGAAACCCTAAAGTCAAG 479
Query 421 CCAGTTCAAGGGTTTAAGGCTGTGTTTGGAGATGATTACTACATTTGTAGATTTCAGGAA 480
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 CCCGTTCAAGGGTTCAAGGCTGTATTTGGAGATGATTACTACATTTGTAGATTTCAGGAA 539
Query 481 CCGGGGAAGACTGAAGCAGAGATTGCGAGTGCAGATCCAAGAATATTTCTGAGGAACCTC 540
|||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 CCGGGGAAGATTGAAGGAGAGATTGCAAGTGCAGATCCAAGAATATTTCTGAGGAACCTC 599
Query 541 TTCACAGGGAGGTCACTCGGTCCGCCGATTTTACCTAAGGATAATCCCTTTGGAGAAAAC 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 TTCACAGGGAGGACACTCGGTCCGCCGATTTTACCTAAGGATAATCCCTTTGGGGAAAAA 659
Query 601 CCTAACCCTAATAGCGAAAACATTGAATTGCCTGAATGGTTTTCTAAGAAAGATCTTGAT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 CCTAACCCTAATAGCGAAAACATTGAATTGCCTGAATGGTTTTCTAAGAAAGATCTCGAT 719
Query 661 TTCTACGTCTCCAAATTCGAGAAGACAGGATTTACCGGTGGATTGAACTACTACAGAGCC 720
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 TTCTATGTCTCCAAATTCGAGAAGGCAGGATTTACCGGTGGATTGAACTACTACAGAGCC 779
Query 721 ATGGATCTAAATTGGGAGCTCACTACACCATGGACCGGAGCTAAGGTTCAAGTTCCAGTG 780
|||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 780 ATGGATCTGAATTGGGAGCTCACTGCACCATGGACCGGAGCTAAGATTCAAGTTCCAGTG 839
Query 781 AAGTTCATGACCGGTGACTTCGACATGGTTTACACCACACCAGGGATGAAAGAGTATATT 840
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 840 AAGTTCATGACAGGTGACTTCGACATGGTGTACACCACACCAGGGATGAAAGAGTACATT 899
Query 841 CACGGTGGTGGGTTTTCAGCAGATGTTCCAACTCTTCAAGAGATAGTAGTGATTGAAGAT 900
||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 900 CACGGTGGTGGATTTGCTGCAGATGTTCCAACTCTTCAAGAGATAGTGGTGATTGAAGAT 959
Query 901 GCTGGTCACTTCGTTAACCAAGAGAAACCTCAAGAGGTCACTGCTCACATCAATGACTTC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GCTGGTCACTTCGTTAACCAAGAGAAACCTCAAGAGGTCACTGCTCACATCAATGACTTC 1019
Query 961 TTCACCAAGCTTCAGGACAACAACAAAAGCTTTTAG 996
||||||||||||| ||||||||||||||||||||||
Sbjct 1020 TTCACCAAGCTTCGGGACAACAACAAAAGCTTTTAG 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5