BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg317449

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05890.1 | Symbols: RCI2B | Low temperature and salt respons...   283    4e-76


> AT3G05890.1 | Symbols: RCI2B | Low temperature and salt responsive 
protein family | chr3:1757631-1758492 REVERSE LENGTH=366
Length=366

 Score =  283 bits (153),  Expect = 4e-76
 Identities = 159/162 (98%), Gaps = 0/162 (0%)
 Strand=Plus/Plus

Query  1    ATGAGTACAGCCACTTTCGTAGAGATTATTCTGGCTATCATCTTGCCTCCTCTCGGCGTC  60
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  41   ATGAGTACAGCCACTTTCGTAGAGATTATTCTTGCTATCATCTTGCCTCCTCTCGGCGTC  100

Query  61   TTTCTCAAATTTGGTTGCAAGGTTGAGTTTTGGATATGTTTGATTCTGACGTTGTTTGGT  120
            ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct  101  TTTCTCAAATTTGGTTGCAAGGTTGAGTTTTGGATATGTTTGATTTTGACGCTGTTTGGT  160

Query  121  TATCTTCCCGGAATCCTTTACGCTCTTTATATCATCACCAAG  162
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  161  TATCTTCCCGGAATCCTTTACGCTCTTTATATCATCACCAAG  202



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5