BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317456
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26360.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 1687 0.0
AT3G20050.1 | Symbols: ATTCP-1, TCP-1 | T-complex protein 1 alp... 52.8 1e-05
> AT5G26360.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr5:9255053-9258991 REVERSE LENGTH=2276
Length=2276
Score = 1687 bits (913), Expect = 0.0
Identities = 1327/1525 (87%), Gaps = 35/1525 (2%)
Strand=Plus/Plus
Query 6 CGCACCAGTTCTTGTTCTCAAG-GAGTCATTGAAGCGTGAATCTGGAACAAAGATTCACC 64
|||||| || || ||||| || || || ||||||||||||||||||| ||| |||| |
Sbjct 106 CGCACCGGTACTCGTTCT-GAGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATC 164
Query 65 ATGCTAATATTCAGGCTTCCAAGTCTG-TGTCTGATATCCTACGCACCACATTGGGTCCT 123
||| |||||| || ||||||||| ||| || |||||||| | || || ||||||||||||
Sbjct 165 ATGGTAATATCCAAGCTTCCAAGGCTGTTG-CTGATATCATTCGTACAACATTGGGTCCT 223
Query 124 AGCTCTATGTTAAAGATGCTTCTTGATGCTGGTGGAGGGATTGTTGTTACTAATGATGGA 183
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 CGTTCTATGTTGAAGATGCTTCTTGATGCTGGTGGAGGGATTGTTGTTACTAATGATGGG 283
Query 184 AATGCTATT-TTGCGTGAAATTGATGTTGCTCACCCTGCAGCTAAGTCGATGATTGAGTT 242
||||||||| || ||||| | ||||| ||||| |||||||||||||| |||||||||||
Sbjct 284 AATGCTATTCTT-CGTGAGCTAGATGTCGCTCATCCTGCAGCTAAGTCAATGATTGAGTT 342
Query 243 GAGTCGCACACAGGACGAAGAAGTCGGTGATGGGACTACATCTGTTA----T-T--CTGG 295
||| || || || || |||||||| ||||||||||| || ||||||| | | ||||
Sbjct 343 GAGCCGTACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGCTGG 402
Query 296 TGAACTG-TTACATGTCGCTGAATCATTTCTTGAGAAGAGTTACCATCCCACAGTCATTT 354
|||| || || || || || ||| | ||||||||||||| |||||||||||||||||| |
Sbjct 403 TGAAATGCTT-CACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATCCCACAGTCATAT 461
Query 355 GCCGAGCTTATAAT-AAGGCTCTCGAGGATGCCATGGCTGTTCTTGA-ATAGATTGCCAT 412
|||||||||| || ||||||||||| ||| | || ||||||||||| | | ||||| ||
Sbjct 462 GCCGAGCTTA-CATCAAGGCTCTCGAAGATTCTATTGCTGTTCTTGACA-AAATTGCTAT 519
Query 413 GCCAATCGATGTCAATGACCGCAAGTGCAAC-AGTACTAGGATTAGTCAAGAGCTGCATA 471
| |||| ||| ||||||| | | || | || ||| ||||||||||||||||||||||||
Sbjct 520 GTCAATTGATATCAATGA-C-C--GTTC-ACAAGTGCTAGGATTAGTCAAGAGCTGCATA 574
Query 472 GCAACAAAATTCACTAGCAAATTTGGAGATCTTATTGCTGAATTGGCTATTGATGCCACC 531
| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 575 GGGACAAAGTTCACTAGCCAATTTGGAGATCTTATTGCGGATTTGGCTATTGATGCCACT 634
Query 532 ACTACTATTGGTGTTGATCTTGGACAAGGATTGAGGGAGGTGGATATTAAAAAGTACATT 591
|||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 635 ACTACTGTTGGTGTTGATCTTGGACAAGGTTTGAGGGAGGTAGACATTAAAAAGTACATC 694
Query 592 AAGGTTGAGAAGGTTCCTGGTGGGCAGTTGGAGGACTGC-AAGGTTCTCAAAGGAGTCAT 650
||||||||||| ||||||||||| ||||| ||||||| | ||||||| |||||||| ||
Sbjct 695 AAGGTTGAGAAAGTTCCTGGTGGTCAGTTCGAGGACT-CTGAGGTTCTTAAAGGAGTTAT 753
Query 651 GTTTAACAAAGACGTAGTTGCTCCAGGTAAAATGAAGAGAAAGATTGTCAACCCGCAGAT 710
|||||||||||| || |||||||| ||||||||||| ||||||||||||||||| | |||
Sbjct 754 GTTTAACAAAGATGTTGTTGCTCCTGGTAAAATGAAAAGAAAGATTGTCAACCCACGGAT 813
Query 711 TATTCTTCTTGACTGCCCCCTGGAGTACAAGAAAGGTGAAAACCAAACCAATGCCGAGTT 770
||||||||||||||| || || |||||||||||||||||||| ||||||||||| |||||
Sbjct 814 TATTCTTCTTGACTGTCCTCTTGAGTACAAGAAAGGTGAAAATCAAACCAATGCTGAGTT 873
Query 771 GGTTAGAGAAGAGGACTGGGAAGTGCTGTTGAAATTGGAAGAGGAGTACATCGAGAACAT 830
||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||||||
Sbjct 874 GGTTAGAGAAGAGGACTGGGAAGTGTTGTTGAAGTTGGAAGAGGAATATATCGAGAACAT 933
Query 831 CTGCGTGCAAATACTAAAGTTCAAGCCCGATTTAGTAATTACAGAGAAGGGGCTTAGTGA 890
||||| |||||||||||||||||||| ||||| || || ||||||||||| ||||||||
Sbjct 934 TTGCGTTCAAATACTAAAGTTCAAGCCTGATTTGGTTATCACAGAGAAGGGTCTTAGTGA 993
Query 891 CTTGGCCTGTCATTATTTCAGTAAAGCTGGGGTTAGTGCAATCAGAAGGTTGAGAAAGAC 950
|||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 994 CTTGGCCTGTCACTATTTCAGTAAAGCTGGGGTAAGTGCAATCCGAAGGTTGAGAAAAAC 1053
Query 951 GGACAACAACAGAATTGCTAAGGCTTGTGGAGCTGTGATTGTCAATAGGCCTGATGAACT 1010
|||||||||||||| || |||||||||||||| || ||||| || ||||| || |||||
Sbjct 1054 TGACAACAACAGAATCGCCAAGGCTTGTGGAGCAGTAATTGTGAACAGGCCCGACGAACT 1113
Query 1011 TCAAGAGTCTGATGTTGGTACCAATGTTGGCTTGTTTGAGGTCAAGAAAATAGGAGATGA 1070
|| ||||||||| | ||||| | |||||||||||||||||||||||| ||||||||
Sbjct 1114 GCAGGAGTCTGATATCGGTACTGGGGCTGGCTTGTTTGAGGTCAAGAAAATTGGAGATGA 1173
Query 1071 TTTCTTTTCCTTT-ATTGTTGATTGCAAAGAACCCAAAGCATGTACCGTACTCTTAAGAG 1129
||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1174 TTTCTTTTC-TTTCATTGTTGATTGCAAAGAACCCAAAGCCTGTACTGTACTCTTAAGGG 1232
Query 1130 GACCAAGTAAAGATCTCCTCAACGAAGTGGAAAGAAATCTT-CAGGATGCAATGTCTGTT 1188
|||||||||||||| || |||| ||||||||||||||| || |||||||| |||||||||
Sbjct 1233 GACCAAGTAAAGATTTCATCAATGAAGTGGAAAGAAAT-TTACAGGATGCCATGTCTGTT 1291
Query 1189 TCAAGAAACATCATCAAGAACCCAAAGCTTGTTCCTGGCGGTGGAGCCACAGAACTAACA 1248
|||||||||| ||||| ||||||||||| |||||||| || ||||||||||| |||||
Sbjct 1292 GCAAGAAACATTATCAAAAACCCAAAGCTAGTTCCTGGTGGAGGAGCCACAGAGCTAACC 1351
Query 1249 GTTTCTGCCACTTTAAAACAGAAAAGTGCAACAATTGAAGG-AGTCGAAAAGTGGCCTTA 1307
||||||||||| ||||||||||| ||||||||||||||||| | | ||||||||||||||
Sbjct 1352 GTTTCTGCCACATTAAAACAGAAGAGTGCAACAATTGAAGGCA-TAGAAAAGTGGCCTTA 1410
Query 1308 TGAAGCAGCTGCTATAGCTTTTGAGG-TCATTCCACGTACTCTAGCTCAGAACTGTGGAG 1366
|||||||||||| || ||||| |||| | ||||||||||| || ||||| |||||||| |
Sbjct 1411 TGAAGCAGCTGCCATTGCTTTCGAGGCT-ATTCCACGTACCCTGGCTCAAAACTGTGGGG 1469
Query 1367 TTAACGTGATCAGAACTATGACAGCATTGCAAGGAAAACATGCAAATGGTGAGAATGCTT 1426
||||||||||| | |||||||| ||||||||||| || |||||||||||||| || || |
Sbjct 1470 TTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAGCATGCAAATGGTGAAAACGCAT 1529
Query 1427 GGACTGGAATCGACGGGGTTACTGGTGCAATAGCTGACATGAAAGAGAAAAAGATATGGG 1486
||||||| || |||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct 1530 GGACTGGTATTGACGGGAACACTGGTGCAATAGCTGATATGAAAGAGAGCAAGATATGGG 1589
Query 1487 ATGCGTTCAATGTGAAGTCGCAAAC 1511
|| ||| |||||||||| |||||||
Sbjct 1590 ATTCGTACAATGTGAAGGCGCAAAC 1614
> AT3G20050.1 | Symbols: ATTCP-1, TCP-1 | T-complex protein 1 alpha
subunit | chr3:6998238-7002404 REVERSE LENGTH=2082
Length=2082
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 261 AGAAGTCGGTGATGGGACTACATCTGTT 288
||||||||||||||||||||||||||||
Sbjct 399 AGAAGTCGGTGATGGGACTACATCTGTT 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5