BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317457
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05960.1 | Symbols: ATSTP6, STP6 | sugar transporter 6 | chr... 2538 0.0
AT5G26250.1 | Symbols: | Major facilitator superfamily protein... 1264 0.0
> AT3G05960.1 | Symbols: ATSTP6, STP6 | sugar transporter 6 | chr3:1783587-1785334
REVERSE LENGTH=1524
Length=1524
Score = 2538 bits (1374), Expect = 0.0
Identities = 1474/1524 (97%), Gaps = 0/1524 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGTTGTTGTTTCTAATGCTAATGCTCCGGCCTTTGAGGCCAAGATGACTGTCTAT 60
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGTTGTTGTGTCTAATGCCAATGCTCCGGCCTTTGAGGCCAAGATGACTGTCTAT 60
Query 61 GTCTTCATCTGCGTTATGATTGCCGCTGTCGGCGGTTTGATCTTCGGTTACGACATAGGA 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GTATTCATCTGCGTTATGATTGCCGCTGTCGGCGGTTTGATCTTCGGTTACGACATCGGA 120
Query 121 ATTTCCGGTGGAGTAAGTGCGATGGACGATTTCCTGAAGGAATTTTTCCCGGCTGTGTGG 180
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 121 ATTTCCGGTGGAGTAAGTGCAATGGACGATTTCCTGAAGGAATTTTTCCCAGCGGTGTGG 180
Query 181 GAGAGGAAGAAGCACGTACACGAGAACAACTACTGCAAGTACGATAACCAGTTCTTGCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGAGGAAGAAGCACGTACACGAGAACAACTACTGCAAGTACGATAACCAGTTCTTGCAA 240
Query 241 CTATTCACCTCGTCCCTTTACCTAGCTGCCCTCGTGGCCAGCTTCTTCGCTTCCGCCACC 300
|| ||||||||||| |||||||||||||| ||||||||||| ||| |||| |||||||||
Sbjct 241 CTGTTCACCTCGTCTCTTTACCTAGCTGCACTCGTGGCCAGTTTCGTCGCGTCCGCCACC 300
Query 301 TGTTCTAAACTTGGACGCAGGCCGACTATGCAGTTTGCTTCTATCTTCTTCTTGATTGGT 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 TGTTCTAAACTTGGACGCAGGCCGACGATGCAGTTTGCTTCTATCTTCTTCTTGATTGGT 360
Query 361 GTCGGTCTCACTGCAGGAGCCGTTAACCTCGTCATGTTGATCATTGGAAGACTCTTCCTT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GTCGGTCTCACTGCAGGAGCCGTTAACCTCGTCATGTTGATCATTGGAAGACTCTTTCTT 420
Query 421 GGCTTTGGTGTCGGATTTGGCAATCAGGCAGTGCCGCTTTTCCTGTCTGAGATTGCTCCA 480
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GGCTTTGGTGTTGGATTTGGCAATCAGGCAGTGCCTCTTTTCCTGTCTGAGATTGCTCCA 480
Query 481 GCACAGCTCCGAGGAGGTCTCAACATTGTATTCCAACTCATGGTTACAATCGGAATCCTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCACAGCTCCGAGGAGGTCTCAACATTGTATTCCAACTCATGGTTACAATCGGAATCCTA 540
Query 541 ATTGCCAACATTGTCAACTACTTCACTGCCACGGTCCACCCTTACGGATGGCGAATTGCT 600
||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 541 ATTGCCAACATTGTCAACTACTTCACTGCCACGGTTCACCCTTACGGATGGAGGATTGCT 600
Query 601 CTCGGTGGAGCCGGAATTCCCGCTGTTATCCTTCTCTTCGGTTCACTACTTATCATTGAG 660
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 CTCGGTGGAGCTGGAATTCCCGCTGTTATCCTCCTCTTCGGTTCACTACTTATCATTGAG 660
Query 661 ACGCCCACAAGCCTCATCGAGCGCAACAAGAATGAAGAAGGAAAAGAAGCCCTAAGGAAG 720
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 ACTCCCACAAGTCTCATCGAGCGCAACAAGAACGAAGAAGGAAAAGAAGCCCTAAGGAAG 720
Query 721 ATCAGAGGAGTTGATGATATCAATGACGAGTATGAGTCTATCGTCCATGCCTGCGACATC 780
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 721 ATCAGAGGAGTTGATGATATCAATGACGAGTATGAGTCTATCGTCCATGCATGTGACATC 780
Query 781 GCGAGTCAAGTCAAGGACCCTTACAGGAAACTGTTGAAGCCTGCTAGTCGCCCACCGTTC 840
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 781 GCGAGTCAAGTCAAGGACCCTTACAGGAAACTGTTGAAGCCCGCGAGTCGCCCACCGTTC 840
Query 841 ATCATCGGAATGCTTCTCCAGCTTTTCCAACAATTTACCGGAATCAATGCGATTATGTTC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATCATCGGAATGCTTCTCCAGCTTTTCCAACAATTTACCGGAATCAATGCGATTATGTTC 900
Query 901 TATGCACCGGTTTTATTCCAAACTGTTGGATTCGGAAGCGACGCAGCTCTTCTCTCTGCG 960
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 901 TATGCGCCGGTCTTATTCCAAACTGTTGGGTTCGGAAGCGACGCAGCCCTTCTCTCTGCG 960
Query 961 GTTATCACCGGAACAATCAATGTTCTCGCCACATTCGTTGGGATTTACCTCGTTGACAAA 1020
|||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 961 GTTATCACCGGATCGATCAATGTTCTCGCCACGTTCGTTGGGATTTACCTCGTTGACAGA 1020
Query 1021 ACCGGCAGGAGATTCCTTCTTCTCCAATCTTCCGTTCACATGCTCATCTGCCAGTTGATC 1080
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACCGGCAGGAGGTTCCTTCTTCTCCAATCTTCCGTTCACATGCTCATCTGCCAGTTGATC 1080
Query 1081 ATTGGAATCATCCTAGCAAAGGACTTGGGTATAACGGGAACACTCGGGAGGCCACAAGCC 1140
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1081 ATTGGAATCATCCTAGCAAAGGACTTGGGCGTAACGGGAACACTCGGGAGGCCACAAGCC 1140
Query 1141 CTAGTAGTGGTGATCTTTGTGTGCGTTTACGTGATGGGCTTTGCATGGTCATGGGGACCC 1200
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1141 CTAGTAGTGGTGATCTTTGTGTGCGTTTACGTGATGGGATTTGCATGGTCATGGGGACCT 1200
Query 1201 TTAGGATGGCTAATTCCTAGCGAGACGTTTCCTCTAGAAACCCGTAGCGCAGGATTCGCT 1260
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1201 TTGGGATGGCTAATTCCTAGCGAGACGTTTCCTCTAGAAACACGTAGCGCAGGATTCGCT 1260
Query 1261 GTTGCAGTCTCGTGCAACATGTTCTTCACTTTCGTAATCGCTCAAGCCTTCCTATCGATG 1320
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1261 GTTGCAGTCTCATGCAACATGTTCTTCACTTTTGTAATCGCTCAAGCCTTCCTATCGATG 1320
Query 1321 CTTTGCGGGATGAGATCTGGAATATTCTTCTTCTTCAGCGCTTGGATCATTGTGATGGGA 1380
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1321 CTTTGCGGGATGAGATCTGGAATATTCTTCTTCTTCAGCGGTTGGATCATTGTGATGGGA 1380
Query 1381 CTGTTTGCGTTTTTCTTCATACCAGAGACAAAAGGAATCGCCATTGATGACATGAGAGAG 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1381 CTGTTTGCGTTTTTCTTCATACCAGAGACAAAAGGAATCGCCATTGATGACATGAGGGAG 1440
Query 1441 AGTGTGTGGAAGCCACATTGGTTCTGGAAAAGGTATATGCTTCCAGAGGACGACCACCAT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGTGTGTGGAAGCCACATTGGTTCTGGAAAAGGTATATGCTTCCAGAGGACGACCACCAT 1500
Query 1501 GACGTTGAGAAGAGAAATGCTTGA 1524
||| | ||||||||||||||||||
Sbjct 1501 GACATAGAGAAGAGAAATGCTTGA 1524
> AT5G26250.1 | Symbols: | Major facilitator superfamily protein
| chr5:9196758-9198801 FORWARD LENGTH=1644
Length=1644
Score = 1264 bits (684), Expect = 0.0
Identities = 1269/1549 (82%), Gaps = 50/1549 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGTTG-T-TGT-TTCTAATGCTAATGCTCC-GGCCTTT-GAGGCCAAGATGACTG 55
|||||||| | | | | |||||||| |||| ||| | |||| || || ||||||||||
Sbjct 1 ATGGCTGTGGTTATATCTTCTAATGGTAAT--TCCAAGTCTTTCGACGCGAAGATGACTG 58
Query 56 TCTATGTCTTCATCTGCGTTATGATTGCCGCTGTCGGCGGTTTGATCTTCGGTTACGACA 115
| |||||||||||||| || || || || ||||| |||||||||||||||||||||||||
Sbjct 59 TTTATGTCTTCATCTGTGTCATTATCGCGGCTGTAGGCGGTTTGATCTTCGGTTACGACA 118
Query 116 TAGGAATTTCCGGTGGAGTAA-GTGCGATGGACGATTTCCTGAAGGAATTTTTCCCGGCT 174
| ||||| || |||||||||| | ||||||||||||||| |||||||||||||||| ||
Sbjct 119 TCGGAATCTCGGGTGGAGTAACG-GCGATGGACGATTTCTTGAAGGAATTTTTCCCATCT 177
Query 175 GTGTGGGAGAGGAAGAAGCACGTACACGAGAACAACTACTGCAAGTACGATAACCAGTTC 234
|||| || ||||||||||| | || ||||||||||| |||||||| || |||||||||
Sbjct 178 GTGTACGAAAGGAAGAAGCATGCGCATGAGAACAACTATTGCAAGTATGACAACCAGTTC 237
Query 235 TTGCAACTATTCACCTCGTCCCTTTACCTAGCTGCCCTCGTGGCCAGCTTCTTCGCTTCC 294
||||| || ||||| || || || |||||||| || || ||||| |||||||| |||||
Sbjct 238 TTGCAGCTCTTCACTTCCTCTCTATACCTAGCGGCTCTAGTGGCTAGCTTCTTTGCTTCG 297
Query 295 GCCACCTGTTCTAAACTTGGACGCAGGCCGACTATGCAGTTTGCTTCTATCTTCTTCTTG 354
|| || || ||||| || |||||||| || || ||||| | ||||| ||||||||||||
Sbjct 298 GCTACATGCTCTAAGCTCGGACGCAGACCCACAATGCAACTCGCTTCCATCTTCTTCTTG 357
Query 355 ATTGGTGTCGGTCTCACTGCAGGAGCCGTTAACCTCGT-CATGTTGATCATTGGAAGACT 413
|| ||||| || || | || ||||| |||||| | | ||||||||||||||| ||| |
Sbjct 358 ATCGGTGTTGGCCTTGCCGCGGGAGCTGTTAACAT-ATACATGTTGATCATTGGTAGAAT 416
Query 414 CTTCCTTGGCTTTGGTGTCGGATTTGGCAATCAGGCAGTGCCGCTTTTCCTGTCTGAGAT 473
||| ||||| || ||||| || ||||| |||||||| || ||||||||| | || |||||
Sbjct 417 CTTGCTTGGATTCGGTGTTGGCTTTGGTAATCAGGCGGTACCGCTTTTCTTATCAGAGAT 476
Query 474 TGCTCCAGCACA-GCTCCGAGGAGGTCTCAACATTGTATTCCAACTCATGGTTACAATCG 532
|||||| || | ||| || ||||||||||||||||| |||||||| ||||||||||| |
Sbjct 477 TGCTCCCGC-GAGGCTTCGTGGAGGTCTCAACATTGTTTTCCAACTTATGGTTACAATTG 535
Query 533 GAATCCTAATTGCCAACATTGTCAACTACTTCA-CTGCCACGGTCCACCCTTACGGATGG 591
||||||||||||| ||||| ||||||||||||| || || | | || ||||||||||||
Sbjct 536 GAATCCTAATTGCTAACATAGTCAACTACTTCACCT-CCTCAATTCATCCTTACGGATGG 594
Query 592 CGAATTGCTCTCGGTGGAGCCGGAATTCCCGCTGTTATCCTTCTCTTCGGTTCACTACTT 651
||||||| |||||||| || |||||||| ||| | ||||| ||||| || || || ||
Sbjct 595 AGAATTGCCCTCGGTGGCGCGGGAATTCCGGCTCTCATCCTCCTCTTTGGATCGCTTCTC 654
Query 652 ATCAT-TGAGACGCCCACAAGCCTCATCGAGCGCAACAAGAATGAA-GAAGGAAAAGAAG 709
||| | || || ||||| || |||||||| || ||||| || || ||||||||||||
Sbjct 655 ATC-TGCGAAACACCCACTAGTCTCATCGAACGGAACAA-AACCAAGGAAGGAAAAGAAA 712
Query 710 CCCT-AAGGAAGATCAGAGGAGTTGATGATATCAATGACGAGTATGAGTCTATCGTCCAT 768
| || || |||||||||||| ||||| ||| | |||| |||||||| || || ||||||
Sbjct 713 CACTCAA-GAAGATCAGAGGCGTTGAAGATGTTGATGAGGAGTATGAATCAATAGTCCAT 771
Query 769 GCCTGCGACATCGCGAGTCAAGTCAAGGACCCTTACAGGAAACTGTTGAAGCCTGCTAGT 828
|| ||||| ||||| || || |||||||||||||||| ||||||| |||| || || ||
Sbjct 772 GCTTGCGATATCGCAAGGCAGGTCAAGGACCCTTACACGAAACTGATGAAACCCGCGAG- 830
Query 829 C-GCCCACCGTTCATCATCGGAATGCTT-CTCCAGCTTTTCCAACAATTTACCGGAATCA 886
| | || || ||| | || |||||| || || ||| |||||||||| || || |||||||
Sbjct 831 CAGGCCGCCTTTCGTGATTGGAATG-TTGCTACAGTTTTTCCAACAGTTCACTGGAATCA 889
Query 887 ATGCGATTATGTTCTATGCACCGGTTTTATTCCAAACTGTTGGATTCGGAAGCGACGCAG 946
| |||||||||||||| || |||||||| ||||| ||||| || || |||| |||||||
Sbjct 890 ACGCGATTATGTTCTACGCTCCGGTTTTGTTCCAGACTGTAGGGTTTGGAAATGACGCAG 949
Query 947 CTCTTCTCTCTGCGGTTATCACCGGAACAATCAATGTTCTC-GCCACATTCGTTGGGATT 1005
|||| || || |||||| |||| ||||| ||||| |||||| | ||| || || ||||||
Sbjct 950 CTCTGCTTTCCGCGGTTGTCACGGGAACGATCAACGTTCTCAG-CACGTTTGTCGGGATT 1008
Query 1006 TACCTCGTTGACAAAACCGGCAGGAGATTCCTTCTT-CTCCAATCTTCCGTTCACATGCT 1064
| ||| || |||||||| ||| | ||||| | | || |||||||||||||||||||||||
Sbjct 1009 TTCCTTGTCGACAAAACTGGCCGAAGATTTC-TATTGCTCCAATCTTCCGTTCACATGCT 1067
Query 1065 CATCTGCCAGTTGATCATTGGAATCATCCTAGCAAAGGACTTGGGTATAACGGGAACACT 1124
||| ||||||||| ||||||||||||||||||| |||||| | | | ||||| || ||
Sbjct 1068 CATATGCCAGTTGGTCATTGGAATCATCCTAGCCAAGGACCTAGACGTGACGGGTACGCT 1127
Query 1125 CGGGA-GGCCACAAGCCCTAGTAGTGGTGATCTTTGTGTGCGTTTACGTGATGGGCTTT- 1182
| | |||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1128 -AGCACGGCCACAAGCCCTAGTAGTGGTGATCTTCGTGTGTGTTTACGTGATGGG-TTTC 1185
Query 1183 GCATGGTCATGGGGACCCT-TAGGATGGCTAATTCCTAGCGAGACGTTTCCTCTAGAA-A 1240
|| ||||||||||| |||| ||||||||||||| ||||| ||||| || || || | | |
Sbjct 1186 GCTTGGTCATGGGG-CCCTCTAGGATGGCTAATCCCTAGTGAGACCTTCCC-CTTGGAGA 1243
Query 1241 CCCGTAGCGCA-GGATTCGCTGTTG-CAGTCTCGTGCAACATGTTCTTCACTTTCGTAAT 1298
| || | || | || ||||| ||| | || || ||||||||||||||||| ||||| ||
Sbjct 1244 CTCGAA-CGGAAGGGTTCGCA-TTGGCCGTGTCTTGCAACATGTTCTTCACGTTCGTGAT 1301
Query 1299 CGCTCAAGCCTTCCTATCGATGCTTTGCGGGATGA-GATCTGGAATATTCTTCTTCTTCA 1357
|||||| |||||||||||||||||||||| ||||| | || || ||||||||||||||||
Sbjct 1302 CGCTCAGGCCTTCCTATCGATGCTTTGCGCGATGAAG-TCAGGGATATTCTTCTTCTTCA 1360
Query 1358 GCGCTTGGATCATTGTGATGGGACTGTTT-GCGTTT-TTCTTCATACCAGAGACAAAAGG 1415
| | ||||||| ||||||||||||| ||| || ||| |||||| | || || || |||||
Sbjct 1361 GTGGTTGGATCGTTGTGATGGGACT-TTTCGC-TTTGTTCTTCGTGCCGGAAACGAAAGG 1418
Query 1416 AATCGCCATTGATGACATGAGAGAGAGTGTGTGGAAGCCACATTGGTTCTGGAAAAGGTA 1475
| || ||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||
Sbjct 1419 AGTCTCCATTGATGACATGAGAGATAGTGTGTGGAAGCTACATTGGTACTGGAAGAGGTT 1478
Query 1476 TATGCTTCCAGAGGACGACCACCATGACGTTGAGAAGAGAAATGCTTGA 1524
|||||| | ||||| || | ||||||||||||||||||| || ||||
Sbjct 1479 TATGCT-C--GAGGAAGATGAGCATGACGTTGAGAAGAGAACTGATTGA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5