BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317462
Length=2067
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19330.1 | Symbols: ARIA | ARM repeat protein interacting wi... 1626 0.0
> AT5G19330.1 | Symbols: ARIA | ARM repeat protein interacting
with ABF2 | chr5:6507794-6512758 REVERSE LENGTH=2491
Length=2491
Score = 1626 bits (880), Expect = 0.0
Identities = 1737/2138 (81%), Gaps = 110/2138 (5%)
Strand=Plus/Plus
Query 1 ATGGAGCAACAACCGGAAAAGCTAGACGACCGGAGCTTCCCGGAGCGCAAAGGACAGAAG 60
||||| ||||||||||| | || ||| | |||||| || |||||||| ||||||||||||
Sbjct 58 ATGGACCAACAACCGGAGAGGCGAGAAGGCCGGAGTTTTCCGGAGCGTAAAGGACAGAAG 117
Query 61 AGAAAACT---GGAA-GA-----AG--G-AGATGAGCGGGAGATCTCCGCTGT-AGCCAC 107
| || || |||| || | | ||| || || |||||||| || || || |||
Sbjct 118 CGGAAGCTAGAGGAAGGAGCCGCCGCCGTAGAAGATCGAGAGATCTCTGCCGTCAG-CAC 176
Query 108 CGACGGAGGCGAGGCGCTCCTCCGAGTGGTCGCCACTCAAGTATCCGTACTGAGCTCCAC 167
|||||||||| | ||||| || | | ||| || ||||||| || ||||| | ||| |
Sbjct 177 CGACGGAGGCCAAGCGCTTCTTAGCGAGGTTGCTGCTCAAGTCTCGGTACTAAACTCTGC 236
Query 168 TTTCTCCTGGAAAGAAG-CCGATCGCACCGCCGCAAAACGCGCCATC-CAAATTCTAGCT 225
||||| ||| ||| || |||||||| | || || || || |||| | ||| |||| |||
Sbjct 237 CTTCTCTTGGCAAG-AGTCCGATCGCGCTGCTGCCAAGCGAGCCA-CTCAAGTTCTGGCT 294
Query 226 GAGCTCGCCAAAAACGAAGATTTTGTTG-ACGTGATTGTCGAGGGAGGGGCTGTTCCAGT 284
||||| ||||||||||| ||||| | || ||||||||||||| ||||| ||||||||||
Sbjct 295 GAGCTAGCCAAAAACGAGGATTTAG-TGAACGTGATTGTCGACGGAGGTGCTGTTCCAG- 352
Query 285 TCTCGT-TGA-GCATCTACAGGCTCCGCCGTACGGTGATGGGG-C-T--CT-A-AAACCA 336
||| | ||| |||||||||||| || || ||| || |||| | | || | || ||
Sbjct 353 -CTCTTATGACGCATCTACAGGCGCCACCATACAACGACGGGGACTTGGCTGAGAAGCCG 411
Query 337 TTGGAACATGAGGTAGAGAAAGGAAGTGCGCTTGCTCTTGGT-TATCTCGCGATCAAGCC 395
| ||||| || || ||||| ||||| || |||| |||||| | ||| || || |||||
Sbjct 412 TACGAACACGAAGTTGAGAAGGGAAGCGCTTTTGCGCTTGGTCT-TCTTGCTATTAAGCC 470
Query 396 AGAGCACCAGAAGCTAATAATTGACTATGGTGCATTGCCCCATCTT-GTGAATCTATTGA 454
|||| | ||||| || ||| | ||| | ||||| || || ||| || |||||| | ||||
Sbjct 471 AGAGTATCAGAAACTGATAGTAGACAAAGGTGCCTTACCTCAT-TTAGTGAATTTGTTGA 529
Query 455 AGAGAAACAAAAATGGTTCTAG-T-T----CT-CG-AT-CTGTTCTCAGAAGGGCGGCTG 505
||||||||||| |||||||||| | | || | || |||| ||||||| |||||||
Sbjct 530 AGAGAAACAAAGATGGTTCTAGCTCTCGAGCTGTGAATAGTGTTATCAGAAGAGCGGCTG 589
Query 506 ATGCTATCATCAATCTTGCCCATGAGAATAACACTATCAAAAACCTTGTTAGGTTAGAAG 565
|||| |||| ||||||||| |||||||| | || |||||| | || ||||||| ||||||
Sbjct 590 ATGCCATCACCAATCTTGCTCATGAGAACAGCAGTATCAAGACCCGTGTTAGGGTAGAAG 649
Query 566 GAGGTATTCCGCCTCTTGTGGAGTTGCTTGAATTTGCTGACTCAAAAGTTCAGCGAGCAG 625
| |||||||| ||||| |||||||||||||||||| |||| ||||| || ||| ||||||
Sbjct 650 GCGGTATTCCACCTCTCGTGGAGTTGCTTGAATTTTCTGATTCAAAGGTCCAGAGAGCAG 709
Query 626 CAGCAGGGGCATTGAGAACCCTCGCGTTTAAAAATGATGCTAACAAGAACCAAATAGTTG 685
|||||||||||||||||||||| || ||||||||||||| ||||||||| || |||||||
Sbjct 710 CAGCAGGGGCATTGAGAACCCTTGCATTTAAAAATGATGATAACAAGAATCAGATAGTTG 769
Query 686 ACTGTAATGCTCTT-CCA-ATGTTGA-TCTTACTGCTAGGATCAGAGGACGCTACGGTAC 742
| || ||||||||| ||| | || | || || |||||||||||||||| ||| | |||
Sbjct 770 AATGCAATGCTCTTCCCACA-CTT-ATTC-TAATGCTAGGATCAGAGGATGCTGCTATAC 826
Query 743 ATTATGAAGCGGTTGGTGTTCTTGGCAATCTAGTACACTCGTCTCTAGACATT-AAAAAG 801
|||||||||||||||| ||| | |||||||||||||||||||||| | ||||| ||||||
Sbjct 827 ATTATGAAGCGGTTGGAGTTATAGGCAATCTAGTACACTCGTCTCCACACATTAAAAAAG 886
Query 802 AAAGTTCTTGA-TGCCAGGGCATTGCAGCCTGTAATCAGTCTTCTCAGCTCTTGTTGCCC 860
| |||||| | |||| |||| ||||| ||||| || ||||||| ||||| ||||||||
Sbjct 887 -AGGTTCTT-ACTGCCGGGGCGTTGCAACCTGTCATTGGTCTTCTTAGCTCCTGTTGCCC 944
Query 861 TGAGAGCCGGAGAGAGGCAGCTTTGTTAATTGGCCAATTTG-CTGCTTCTGATTCTGATT 919
|||||| | |||||||| ||||| ||| |||| || |||| || | ||||||||||||
Sbjct 945 TGAGAGTCAAAGAGAGGCGGCTTTATTACTTGGGCAGTTTGCCT-CAACTGATTCTGATT 1003
Query 920 GCAAGGCACACATAGTACAAAGGGGGGCTGTCTGTCCTTTGATTAAGATGCTTGAGTCAC 979
| |||| ||||| || |||||||| |||||| ||||||| ||| |||||||| |||| |
Sbjct 1004 GTAAGGTGCACATTGTGCAAAGGGGTGCTGTCCGTCCTTTAATTGAGATGCTTCAGTCCC 1063
Query 980 CAGAAGTTAAGTTGAAGGAAATGTCAGCCTTTGCGTTGGGGAGACTGGCACAGGATTCCC 1039
| || || |||||||||||||||| |||||||| |||| ||| ||||||||||| |||
Sbjct 1064 CGGATGTCCAGTTGAAGGAAATGTCGGCCTTTGCACTGGGTAGATTGGCACAGGATGCCC 1123
Query 1040 ACAATCAAGCTGGCATTGCTCATAAG-GGTGCTCTAGGACCTTTATTGAAGCTTCTAGAA 1098
||||||||||||| ||||| ||| || |||| | |||||||||||||||||||||| ||
Sbjct 1124 ACAATCAAGCTGGTATTGCCCAT-AGTGGTGGTTTAGGACCTTTATTGAAGCTTCTCGAT 1182
Query 1099 TC-AGAAAATATATC-TCTGCAACGCAAAGCTGCATTTGCTCTTTATGGTCTTGCTGATA 1156
|| || |||| ||| | |||||| ||| |||||||||||||||||||| ||||| ||||
Sbjct 1183 TCAAG-AAATGGATCAT-TGCAACACAATGCTGCATTTGCTCTTTATGGCCTTGCCGATA 1240
Query 1157 ATGAGGATAATGTGTCTGCTTTTATCAGCGTGGGAGGCGTCCAGAAGCTTCTA-GAAGGA 1215
|||||||||||||||| | ||||||||| |||||||| |||| ||||| | | || |||
Sbjct 1241 ATGAGGATAATGTGTCAGATTTTATCAGGGTGGGAGGTATCCAAAAGCTAC-AGGATGGA 1299
Query 1216 AAGTTTATTGTTCAAGCAACTAAAGATTGTGTTACCAAAACAGTAAAAAGATTAGAGGGG 1275
|||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||| |
Sbjct 1300 GAGTTTATTGTTCAAGCAACTAAAGATTGTGTTTCCAAAACACTAAAGAGATTGGAGGAG 1359
Query 1276 AAGATTCAGGGAAGAGTTTTAACACATCTATTGTACCTGATGCACAGTTCAGACAAG-CT 1334
|||||||| ||||||||| | | |||||| |||||||| |||| || |||||| ||| ||
Sbjct 1360 AAGATTCATGGAAGAGTTCTGAGACATCTGTTGTACCTAATGCGCATTTCAGAGAAGTCT 1419
Query 1335 TATCCAAAGACGAGTTGCTCTTGCTCTTGCCCTTCTCTGTTC-CCCAGAGGATCAGCGAA 1393
||||||||||||||||||||||| ||||| | ||||||||| ||| |||||||| ||||
Sbjct 1420 -ATCCAAAGACGAGTTGCTCTTGCCCTTGCTCATCTCTGTTCACCC-GAGGATCAACGAA 1477
Query 1394 CCATATTCTT-GCT--C--C---TTGGACTT-CT--T-GAT-T-CTA----C---AAACG 1432
|||||||| | | | | | ||||| || || | | | | || | ||||
Sbjct 1478 CCATATTCATAGATGACAACGGGTTGGAGTTGCTACTCGGTCTTCTTGGTTCTTTAAACA 1537
Query 1433 CTAAGCAGCAACTTGATAGTGCTGTAGC-TCTATACAA-TCTAGCAAATAGATCTATGGC 1490
|||||||||||||||| |||| | ||| | | ||||| | ||||||||| |||||||||
Sbjct 1538 CTAAGCAGCAACTTGACGGTGCAGCAGCGT-TGTACAAAT-TAGCAAATAAATCTATGGC 1595
Query 1491 GCTTTCTTTAGTCGATGCTGCTCCTCCATCTCCAACACAAATGGTATATCTTGGAGAGAA 1550
|||||| ||| |||||||||||||| ||||||||||||| ||| ||||| |||||| |
Sbjct 1596 ACTTTCTCCAGTTGATGCTGCTCCTCCTTCTCCAACACAAAGGGTTTATCTCGGAGAGCA 1655
Query 1551 ATATGTAAATAATGCTACGTTGTCTGATGTGACCTTTCTAGTTGAAGGCAGGAGATTCTA 1610
||||||||||||||||||| |||||||||| ||||||||||| ||||| |||| ||||||
Sbjct 1656 ATATGTAAATAATGCTACGCTGTCTGATGTAACCTTTCTAGTCGAAGGAAGGACATTCTA 1715
Query 1611 TGCTCACAGAATTTGTCTGCTGGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGG 1670
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1716 TGCACACAGAATTTGTCTGCTGGCATCCTCAGATGCATTTCGTGCAATGTTTGATGGTGG 1775
Query 1671 CTACCGAGAAAAAGATGCAAGAGATATCGAGATTCCAAATATTCAA-TGGGAAGTTTTTG 1729
||| |||||||||| || |||||||| |||||||||||||| ||| ||||| || ||||
Sbjct 1776 TTACAGAGAAAAAGACGCTAGAGATATTGAGATTCCAAATAT-CAAATGGGAGGTGTTTG 1834
Query 1730 AGTTAATGATGAGGTTTCTATACACGGGTTCAGTCAACATCACAAAAGAGAT-TGCAGAA 1788
||||||||||||||||| ||||||| || || ||| |||| ||||| ||||| | || ||
Sbjct 1835 AGTTAATGATGAGGTTTATATACACTGGATCTGTCGACATAACAAATGAGATAT-CAAAA 1893
Query 1789 GACCTTCTAAGAGCAGCGGATCAGTATCTCTTGGAGGGGCTCAAGCGACTCTGTGAATAC 1848
|| ||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 1894 GATCTTCTAAGAGCAGCGGATCAGTATCTCTTGGAGGGCCTGAAACGACTCTGTGAATAC 1953
Query 1849 ATTATTGGTCAGGATATAATGGTGGAGAAC-ATAGG-GAGCAAGTACGATCTCTCAGAAG 1906
| |||| ||||||||| | | |||| || ||||| || || |||||| || |||||||
Sbjct 1954 ACAATTGCTCAGGATATTACGTTGGA-AAGTATAGGAGA-CATGTACGAGCTATCAGAAG 2011
Query 1907 CATTCAACGCAAAGTCACTGAAGCA-GACTTGTATCTTATTCATCCTTAAACACTTT-GA 1964
||||| | || | ||| |||| ||| | |||||||| | |||||||| | || ||| ||
Sbjct 2012 CATTCCATGCGATGTCGCTGAGGCAAG-CTTGTATCATGTTCATCCTGGAGCA-TTTCGA 2069
Query 1965 TAAACTGCGTTTAAAACCCGGG-ACTAACCAACTGGTGCAGCGAACAATCCCAGAGATAC 2023
||||||| ||| || || || | ||| | ||||||||| ||||||| |||||||||
Sbjct 2070 TAAACTGAGTTCAATGCCTTGGCAG-AACGAGCTGGTGCAGAGAACAATACCAGAGATAA 2128
Query 2024 GCAAA-TACATGTGTAGAGTCCTCAACAA-GACTACTA 2059
| | | ||| | ||||||| ||| ||||| | ||||||
Sbjct 2129 G-AGAGTACTTTTGTAGAGCCCT-AACAAAGTCTACTA 2164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102459312345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5