BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317466
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06030.1 | Symbols: ANP3, MAPKKK12, NP3 | NPK1-related prote... 3144 0.0
AT2G43930.1 | Symbols: | Protein kinase superfamily protein | ... 261 2e-68
AT2G43830.1 | Symbols: | pseudogene, NPK1-related protein kina... 121 3e-26
> AT3G06030.1 | Symbols: ANP3, MAPKKK12, NP3 | NPK1-related protein
kinase 3 | chr3:1818740-1822840 REVERSE LENGTH=2246
Length=2246
Score = 3144 bits (1702), Expect = 0.0
Identities = 1887/1976 (95%), Gaps = 14/1976 (1%)
Strand=Plus/Plus
Query 1 ATGCAGGATATTCTCGGATCGGTTCGCCGATCCTTGGTTTTTCGGTCGTCTTTTGCCGGA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 136 ATGCAGGATATTCTCGGATCGGTTCGCCGATCCTTGGTTTTCCGGTCGTCTTTGGCCGGA 195
Query 61 GACGATGGTAGTAGCGGCGGAGGTCTAAGCGCATTCGTCGGGAAGATTAACTCTAGTATT 120
|||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 196 GACGATGGTACTAGCGGCGGAGGTCTTAGCGGATTCGTCGGGAAGATTAACTCTAGTATC 255
Query 121 CGTAGCTCTCGTATAGGCCTCTTTACCAAGCCGCCTCCAGGCCTTCCTGCTCCTAGAAAA 180
||||||||||| || || |||||| | |||||||||||||||||||||||||||||||||
Sbjct 256 CGTAGCTCTCGAATTGGGCTCTTTTCTAAGCCGCCTCCAGGCCTTCCTGCTCCTAGAAAA 315
Query 181 GAAGAAGCGTCGTCGATTCGGTGGAGGAAAGGGGAATTAATCGGTTGCGGTGCTTTTGGG 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GAAGAAGCGCCGTCGATTCGGTGGAGGAAAGGGGAATTAATCGGTTGCGGTGCTTTTGGA 375
Query 241 AGGGTTTACATGGGAATGAATCTCGATTCCGGCGAGCTTCTTGCAATTAAACAGGTTTTA 300
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 376 AGAGTTTACATGGGAATGAACCTCGATTCCGGCGAGCTTCTTGCAATTAAACAGGTTTTA 435
Query 301 ATCGCTCCAAGCAGTGCTTCAAAGGAGAAGACTCAGGGTCACATCCGAGAGCTTGAGGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 ATCGCTCCAAGCAGTGCTTCAAAGGAGAAGACTCAGGGTCACATCCGAGAGCTTGAGGAA 495
Query 361 GAAGTACAACTTCTTAAGAATCTTTCACATCCAAACATTGTTAGATACTTGGGTACTGTA 420
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 496 GAAGTACAACTTCTTAAGAATCTTTCACATCCGAACATCGTTAGATACTTGGGTACTGTA 555
Query 421 AGAGAGAGTGATTCGTTGAATATTTTGATGGAGTTTGTTCCTGGTGGATCAATATCATCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 AGAGAGAGTGATTCGTTGAATATTTTGATGGAGTTTGTTCCTGGTGGATCAATATCATCT 615
Query 481 TTGTTGGAGAAGTTTGGATCTTTTCCTGAGCCAGTGATAATAATGTACACAAAGCAGCTG 540
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 616 TTGTTGGAGAAGTTTGGATCTTTTCCTGAGCCTGTGATTATTATGTACACAAAGCAACT- 674
Query 541 T-TGCTGGGTTTGGAGTATCTTCACAACAATGGGATTATGCATAGAGATATTAAGGGGGC 599
| |||| ||| |||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 675 TCTGCTTGGTCTGGAATATCTTCACAACAATGGGATCATGCATCGAGATATTAAGGGGGC 734
Query 600 AAATATTTTGGTTGATAACAAAGGGTGCACCAGGCTCGCAGATTTTGGTGCTTCCAAGAA 659
|||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 735 AAATATTTTGGTCGATAACAAAGGTTGCATCAGACTCGCAGATTTTGGTGCTTCCAAGAA 794
Query 660 AGTTGTAGAGCTAGCTACTGTAAATGGTGCCAAATCTATGAAGGGAACGCCTTATTGGAT 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 795 AGTTGTAGAGCTAGCTACTGTAAATGGTGCCAAATCTATGAAGGGGACGCCTTATTGGAT 854
Query 720 GGCTCCTGAAGTCATTCTCCAGACTGGTCATAGCTTCTCTGCTGATATATGGAGTGTTGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GGCTCCTGAAGTCATTCTCCAGACTGGTCATAGCTTCTCTGCTGATATATGGAGTGTTGG 914
Query 780 GTGTACTGTGATTGAGATGGCTACAGGGAAGCCTCCCTGGAGCGAGCAGTATCAGCAGTT 839
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 915 GTGCACTGTGATTGAGATGGCTACGGGGAAGCCTCCCTGGAGCGAGCAGTATCAGCAGTT 974
Query 840 TGCTGCTGTACTTCATATTGGTAGAACAAAAGCTCATCCTCCAATTCCAGAAGACCTCTC 899
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TGCTGCTGTCCTTCATATTGGTAGAACAAAAGCTCATCCTCCAATTCCAGAAGACCTCTC 1034
Query 900 ACCAGAGGCTAAAGACTTTCTTTTGAAATGCTTACACAAAGAACCAAGCTTGAGACTCTC 959
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1035 ACCAGAGGCTAAAGACTTTCTAATGAAATGCTTACACAAAGAACCAAGCTTGAGACTCTC 1094
Query 960 TGCAACCGAATTGCTTCAGCACCCGTTTGTCACTGGAAAGCGCCAGGAATCTCTT-TC-A 1017
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |
Sbjct 1095 TGCAACCGAATTGCTTCAGCACCCGTTTGTCACTGGAAAGCGCCAGGAA-C-CTTATCCA 1152
Query 1018 GCTTACCGTAATT-TACTTACGGAATGCGGGAACCCAATAACTACACAAGGAGTGAATGT 1076
||||||||||||| | ||||||||||| || |||||||||||||| |||||| |||||||
Sbjct 1153 GCTTACCGTAATTCT-CTTACGGAATGTGGAAACCCAATAACTACTCAAGGAATGAATGT 1211
Query 1077 TAGGAGTTCAATAAATTCGTTGATCAGGAGGTCAACCTGTTCAGGCTTGAAGGATGTCTG 1136
| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1212 TCGGAGTTCAATAAATTCGTTGATCAGGAGGTCGACATGTTCAGGCTTGAAGGATGTCTG 1271
Query 1137 TGAACTGGGAAGCTTGAGGAGTTCCATTATATACCCATAGAAGTCAAATAATTCAGGATT 1196
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1272 TGAACTGGGAAGCTTGAGGAGTTCCATTATATACCCACAGAAGTCAAATAACTCAGGATT 1331
Query 1197 CGGTTGGCGAGATGGAGACTCTGATGACCTTTGTCAGACCGACATGGATGATCTCTGCAA 1256
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1332 TGGTTGGCGAGATGGAGACTCTGATGACCTTTGTCAGACCGATATGGATGATCTCTGCAA 1391
Query 1257 CATTGAATCAGTCAGAAATAATGTTTTGTCACAATCCACCGATTTAAACAAGAGTTTTAA 1316
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1392 CATTGAATCAGTCAGAAACAATGTTTTGTCACAGTCCACCGATTTAAACAAGAGTTTTAA 1451
Query 1317 TCCCATGTGTGATTCAACGGATAACTGGTCTTGCAAGTTTGATGAAAGCCCAGAAGTGAT 1376
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1452 TCCCATGTGTGATTCCACGGATAACTGGTCTTGCAAGTTTGATGAAAGCCCAAAAGTGAT 1511
Query 1377 GAAAAGCAAATCTAACCTGCTTTCTTACCAAGCTGCTGAACTCAAAACTGGGGTTCCATG 1436
|||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||
Sbjct 1512 GAAAAGCAAATCTAACCTGCTTTCTTACCAAGCTTCTCAACTCCAAACTGGAGTTCCATG 1571
Query 1437 TGATGAGGAAACCAACTTAACATTTGCTGGTGGCTCTTCCGTTGCAGAGGACGATTATAA 1496
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1572 TGATGAGGAAACCAGCTTAACATTTGCTGGTGGCTCTTCCGTTGCAGAGGATGATTATAA 1631
Query 1497 AG-CAACAGAGTTGAAAATAAAATCATTTTTGGATGAGAAGGCTCAGGATTTGAAAAGGT 1555
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 AGGCA-CAGAGTTGAAAATAAAATCATTTTTGGATGAGAAGGCTCAGGATTTGAAAAGGT 1690
Query 1556 TGCAGACCCCTCTGCTTGAAGAATTCCACAATGCTATGAATCCAGGAACACCACAAAGTG 1615
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 1691 TGCAGACCCCTCTGCTTGAAGAATTCCACAATGCTATGAATCCAGGAATACCCCAAGGTG 1750
Query 1616 CACTTGGAGACACCAATAGCTACAATTTACCAAACCTACCAACTATAAGCAAGTCACCTA 1675
|||||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||||
Sbjct 1751 CACTTGGAGACACCAATATCTACAATTTACCAAACTTACCAAGTATAAGCAAGACACCTA 1810
Query 1676 AACGACTTCCGAGTAGACGACTCTCAGCAATCAGTGATGCTATGCCTAGCCCGCTCAAAA 1735
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1811 AACGACTTCCGAGTAGACGACTCTCAGCAATCAGTGATGCTATGCCCAGCCCACTCAAAA 1870
Query 1736 GCTCCAAACGTACACTGAACACAAGCAGAGTGATGCAGCCAGGAACTGAACCAACTCAAG 1795
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1871 GCTCCAAACGTACACTGAACACAAGCAGAGTGATGCAGTCAGGAACTGAACCAACTCAAG 1930
Query 1796 TCAATGAGTCGACCAAGAAGGGAGTAACTAATAGCCGTTGTTTTTCAGAGATACGTCGGA 1855
|||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1931 TCAACGAGTCGACCAAGAAGGGAGTAAATAATAGCCGTTGTTTCTCAGAGATACGTCGGA 1990
Query 1856 AATGGGAAGAAGAACTCTATGAAGAACTTGAGAGGCATCGAGGCAAAGAATCTGCGACAT 1915
| ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 1991 AGTGGGAAGAAGAACTCTATGAAGAGCTTGAGAGGCATCGAG--A--GAATCTGCGACAC 2046
Query 1916 GCTGGTGCAGGAGGGAAGACTCCATTGTCAGCCCACAAAGGATAGTGAACGGCTAA 1971
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 2047 GCTGGTGCAGGAGGGAAGACTCCATTATCAGGCCACAAAGGATAGTGAACGGCTAA 2102
> AT2G43930.1 | Symbols: | Protein kinase superfamily protein
| chr2:18193151-18195582 FORWARD LENGTH=652
Length=652
Score = 261 bits (141), Expect = 2e-68
Identities = 153/159 (96%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 355 GAGGAAGAAGTACAACTTCTTAAGAATCTTTCACATCCAAACATTGTTAGATACTTGGGT 414
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 371 GAGGAAGAAGTACAACTTCTTAAGAATCTTTCACATCCGAACATTGTTAGATACTTGGGT 430
Query 415 ACTGTAAGAGAGAGTGATTCGTTGAATATTTTGATGGAGTTTGTTCCTGGTGGATCAATA 474
|||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 431 ACTGTAAGAGAGAGTGATTCGTTGAATATTATGATGCAGTTTGTTCCTGGCGGATCAATT 490
Query 475 TCATCTTTGTTGGAGAAGTTTGGATCTTTTCCTGAGCCA 513
||||||||||||| |||||||||||||||||||||||||
Sbjct 491 TCATCTTTGTTGGCGAAGTTTGGATCTTTTCCTGAGCCA 529
> AT2G43830.1 | Symbols: | pseudogene, NPK1-related protein kinase
3, identical to NPK1-related protein kinase 3 (GI:2342427)
(Arabidopsis thaliana);; blastp match of 91% identity and
2.1e-09 P-value to GP|456309|dbj|BAA05648.1||D26601 protein
kinase {Nicotiana tabacum} | chr2:18154542-18156488 REVERSE
LENGTH=1947
Length=1947
Score = 121 bits (65), Expect = 3e-26
Identities = 69/71 (97%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 403 AGATACTTGGGTACTGTAAGAGAGAGTGATTCGTTGAATATTTTGATGGAGTTTGTTCCT 462
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1529 AGATACTTGGGTACTGTAAGAGAGAGTGATTCGTTGAATATTATGATGCAGTTTGTTCCT 1588
Query 463 GGTGGATCAAT 473
|||||||||||
Sbjct 1589 GGTGGATCAAT 1599
Score = 84.2 bits (45), Expect = 4e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 355 GAGGAAGAAGTACAACTTCTTAAGAATCTTTCACATCCAAACATTGTT 402
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1396 GAGGAAGAAGTACAACTTCTTAAGAATCTTTCACATCCGAACATTGTT 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97640060025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5