BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317476
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06140.1 | Symbols: | RING/U-box superfamily protein | chr3... 1764 0.0
AT3G06145.1 | Symbols: | unknown protein; Has 15 Blast hits to... 758 0.0
> AT3G06140.1 | Symbols: | RING/U-box superfamily protein | chr3:1856682-1858855
REVERSE LENGTH=1469
Length=1469
Score = 1764 bits (955), Expect = 0.0
Identities = 1098/1164 (94%), Gaps = 22/1164 (2%)
Strand=Plus/Plus
Query 507 tctctctgcttcttc-ctgttctgctttctgtcttgtctctttctttcccattgtcattc 565
|||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 12 TCTCTCTGCTTC-TCACTGTTGTGCTTTCTGTCTTGTCTCTGTCTTTCCCATTGTCATTC 70
Query 566 tctcACCAATGGGAATCTCCTTTAGCAACAACAACAGAAGACGAGACAACAATAACAATC 625
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 71 TCTCACCAATGGGAATCTCCTTTAGCAACAACAACAGAAGACGAGACAACAAT---AATC 127
Query 626 GCCGTCACCTCCACCACTATCCT---CCGCCGCCTTACTATTACCTCGACCCTCCTCCTC 682
| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 128 GTCGCCACCTCCACCACTATCCTCCGCCGCCGCCTTACTATTACCTCGACCCTCCTCCTC 187
Query 683 CTCCGCCGCCGCCATTTCCACCGCATTATGACTATAACTACTCCAATTACCATCTCTCTC 742
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 CT---CCTCCGCCATTTCCACCGCATTATGACTATAACTACTCCAATTACCATCTCTCTC 244
Query 743 AACCTCTACCGCCACAGCCACAGATCAACTCTTGTTCCTACGGCCATTACCATTATCACC 802
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 245 CGCCTCTACCGCCACAGCCACAGATCAACTCTTGTTCTTACGGCCATTACCATTATCACC 304
Query 803 CTCAGCCTCCTCAGTATTTCACCACCGCTCAGCCCAATTGGTGGGGTCCAATGGTGAGGC 862
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 305 CTCAGCCTCCTCAGTATTTCACCACCGCTCAGCCCAATTGGTGGGGCCCAATGATGAGAC 364
Query 863 CGGCGTATTACGGTCCCCCTCAGCCGCAAACGCAAACGCAACCGCTTCCACCGCCATACG 922
||||||| ||| |||| ||||| || ||||||||||||||| | | |||||||
Sbjct 365 CGGCGTACTACTGTCCGCCTCA---GC---CGCAAACGCAACCGC--CTA-AGCCATACC 415
Query 923 TGGAGCAACAGAACGCGAAGAAGGTGAGGAACGATGTCAATGTGCATAAAGATACAGTGA 982
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 416 TGGAGCAACAGAACGCGAAGAAGGTGAGGAATGATGTCAATGTGCATAGAGATACAGTGA 475
Query 983 GGCTTGGAGTGGACGATCTCGTCCCTGGTCACCATCTAGTTTCCTTCGTCTTCGATGCCC 1042
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 476 GGCTTGAAGTGGACGATCTCGTTCCTGGTCACCATCTAGTTTCCTTCGTCTTCGATGCTC 535
Query 1043 TTTTCGATGGCAGTTTCACTATCACCTTCTTTGCAAAGGAGGAACCAAATTGCACCATTA 1102
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTTTCGACGGCAGTTTCACTATCACCTTCTTTGCAAAGGAGGAACCAAATTGCACCATTA 595
Query 1103 TCCCGCAGTTTCCAGAGGTTTATTCACCGACAAGATTTCATTTTCAGAAAGGTCCTGGAC 1162
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 596 TCCCACAGTTTCCAGAGGTTTATTCACCCACAAGATTCCATTTTCAGAAAGGTCCTGGAC 655
Query 1163 AGAAGTTTCTGCAGCCTTCAGGGACAGGAACAGACCTGAGCTTCTTTGCTCTTGACGATC 1222
||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct 656 AGAAGTTTCTGCAGCCTTCAGGGACAGGAACTGACCTGAGCTTCTTTGTTCTTGATGATC 715
Query 1223 TGTC-AAGACCTTTACAAGAAGATGTGTATCCGCTTGTAATATCAGCTGAGACGGTAATC 1281
|||| || ||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 716 TGTCTAA-ACCCTTAGAAGAAGATGTGTATCCGCTTGTAATATCAGCTGAGACGATAATC 774
Query 1282 TCTCCTAATTCGATCTCAGAGCAATCATCAGTTCATAAGCAAGTCACACAAGCGGTTCTC 1341
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCTCCAAATTCAATCTCAGAGCAATCATCAGTTCATAAGCAAGTCACACAAGCGGTTCTC 834
Query 1342 GAGAAAGATAATGATGGATCTTTCAAAGTGAAAGTGGTGAAGCAGATTCTTTGGATTGAA 1401
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 835 GAGAAAGATAATGATGGATCTTTCAAAGTGAAAGTTGTGAAGCAGATTCTTTGGATTGAA 894
Query 1402 GGAGTTCGATATGAACTCCGTGAGTTGTATGGCTCGACCACTCAAGGTGCAGCCTCGGGA 1461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GGAGTTCGATATGAACTCCGTGAGTTGTATGGCTCGACCACTCAAGGTGCAGCCTCGGGC 954
Query 1462 TTAGAGGACAGTGGTTCGGGTAAAGAATGTGTGATCTGCATGACTGAGGCTAAGGACACG 1521
||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 955 TTAGATGAGAGTGGTTCGGGTACAGAATGTGTTATCTGCATGACTGAGGCTAAGGACACG 1014
Query 1522 GCTGTACTGCCTTGCAGACATTTGTGCATGTGTAGCGACTGTGCTAAAGAATTGAGGCTT 1581
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GCCGTGCTGCCTTGCAGACATTTGTGCATGTGTAGCGACTGTGCTAAAGAATTGAGGCTT 1074
Query 1582 CAGTCGAACAAATGTCCGATTTGTCGACAACCCATCGAAGAGCTCTTAGAGATCAAAGTG 1641
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1075 CAGTCCAACAAATGTCCGATTTGTCGACAACCCATCGAAGAGCTCTTAGAGATCAAAATG 1134
Query 1642 AACAGTAGTGATGAACAACACTAG 1665
||||||||||||||||||||||||
Sbjct 1135 AACAGTAGTGATGAACAACACTAG 1158
> AT3G06145.1 | Symbols: | unknown protein; Has 15 Blast hits
to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:1859924-1860650 REVERSE LENGTH=727
Length=727
Score = 758 bits (410), Expect = 0.0
Identities = 476/506 (94%), Gaps = 12/506 (2%)
Strand=Plus/Plus
Query 1 ATGAATATGAAAACATCAAAGCTGAAGTTCACAAAAGAGATGATAGAGTCTATCAAAGAC 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 33 ATGAATATGAAAACATCAAAGATGAAGTTCACAAAAGAGATGATAGAGTCTATCAAAGAC 92
Query 61 AAGCTCTCAAGGCTCAGCTTCCTCCTCCTCTTCCTCCGACAATGCTACGGTGGCTGCGGC 120
|||||| | |||||||| |||||||||||||||||||||||| ||||||
Sbjct 93 AAGCTCCCGAGGCTCAG------------CTTCCTCCGACAATGCTACGGTGGTTGCGGC 140
Query 121 GACCGGACCCACTTACTCCCTTGCTCCATCGCCACCACTTCCACCCGCTTTTGGAACCTC 180
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GACCGGACGCATTTACTCCCTTGCTCCATCGCCACCACTTCCACCCGCTTTTGGAACCTC 200
Query 181 TCCGACCGTCCCGTGGAGCTCCAAATTCGGGTCGGTTCAATCCTAAAACGGGTCCACACT 240
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 201 TCCGACCGTCCCGTGGAGCTCCAGATTCGGGTCGGTTCAATTCTAAAACGGGTCCACACT 260
Query 241 CTCAAACCTGGCCGTTCCAAGAGGCTTAGACACAGAAGCATCCACAGAGCTTACGTGGAT 300
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||
Sbjct 261 CTCAAACCTGGCCGTTCCAAGAAGCTTAGACACAGAAGCATTCACAGAGCTTACGTTGAT 320
Query 301 GACCAGGAAGGACGTAGATGGCTGTACTACGACGACACGTGCCTACCGTACGTATGGGTG 360
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 321 GACCAGGAAGGACGTAGATGGCTGTACTACGACGACACTTGTCTACCGTACGTATGGGTT 380
Query 361 CACGAGACCGGTACAGACTTGTCGAAGATGGTGAAGCAACAGTACGTGAGTCTCGAGGAT 420
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CACGAGACTGGTACGGACTTGTCGAAGATGGTGAAGCAACAGTACGTGAGTCTCGAGGAT 440
Query 421 CTGAGGGATTACTCGGAGATTAGGGTTTTTAAGGATTTACAGAGAGGTTGCGTCTCAGTT 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 441 CTGAGGGATTACTCGGAGATTAGGGTTTTTAAGGATTTACAGAGAGGTTGTGTCGCAGTT 500
Query 481 GAGAAAAGAGACAGAgcttctgcttt 506
||||||||||||||||||||||||||
Sbjct 501 GAGAAAAGAGACAGAGCTTCTGCTTT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82278693255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5