BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317478
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06160.2 | Symbols: | AP2/B3-like transcriptional factor fa... 1149 0.0
AT3G06220.1 | Symbols: | AP2/B3-like transcriptional factor fa... 399 2e-110
> AT3G06160.2 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr3:1864273-1867267 FORWARD LENGTH=1253
Length=1253
Score = 1149 bits (622), Expect = 0.0
Identities = 884/1003 (88%), Gaps = 47/1003 (5%)
Strand=Plus/Plus
Query 31 GTTCATACGTCTTCCATGGCTTCCAGTGATGTTCTTCCTCGATTCTTCACTGTTTTCCTC 90
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 216 GTTCATACGTCTTCCATGGCTTCCGGTGATGTTCTTCCTAGATTCTTCACTGTCTTCCTC 275
Query 91 TCCCAGTACAGCTCCGAATCCATGGTGATACCACGTTCTTACTACGAA-CATTTACCACG 149
||||| | ||||||||||||||||||||||||| | ||||||||| || | |||||||||
Sbjct 276 TCCCATTGCAGCTCCGAATCCATGGTGATACCAAGGTCTTACTAC-AATCTTTTACCACG 334
Query 150 TCGGTTGCCCAAAACTGCCATTCTCGTGGGAACTGGTGGAAGATTTTGGAAAGTAGCAAT 209
|| ||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 335 TCCGTTGCCCAAGACTGCGATTCTCATCGGAACTGGTGGAAGATTTTGGAAAGTAGCAAT 394
Query 210 GACGAGCAGGCGAGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTGGCTGATAA 269
|||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 395 GACGAGCAAGCAAGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTTGCTGATAA 454
Query 270 CGAGTTAAAAGATGGAGAATTCTTAACTTTTGTGTTTGATGGGCACAAAAGTTATGAAGT 329
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CCAGTTAAAAGAGGGAGAATTCTTAACTTTTGTGTTTGATGGGCACAAAAGTTATGAAGT 514
Query 330 AAGTATCTATGGTCGTGGAGATTGCAAAGAGACTCGAGCAGTCATTCAAGTTGAAGAGAT 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AAGTATCTATGGTCGTGGAGATTGCAAAGAGACTCGAGCAGTCATTCAAGTTGAAGAGAT 574
Query 390 CTCTGATGACGATACAGAAGATTACAGCGTTTCTCTTCATAGCTTTAACAACGTTTCGCT 449
||||||||| |||||||||| ||| |||||||||||||||| || ||| ||||| ||
Sbjct 575 CTCTGATGA---TACAGAAGATGACAACGTTTCTCTTCATAGCCCTAGCAATGTTTCACT 631
Query 450 TCATAGCCTT-GACAATGATTCTCTTCAGGCTGATGTTGAGATAG-AGAGCGATTCTCTT 507
| |||||||| | ||| ||||||| ||| | | | | ||| | | || |||||||
Sbjct 632 TGATAGCCTTAG-CAACGATTCTCATCA---T-A-GC--AC-TAGCA-A-CGTTTCTCTT 680
Query 508 --AAGGCTGATGTTGAGATAGAGAGCGATTCTCTTCA-GGTTGATGCTGAGATAGAGAGC 564
||| || | || | | |||||||||||| ||| ||||||||||||||||||
Sbjct 681 CGAAGCCT--T----AGC-A-A---CGATTCTCTTCATGGT-GATGCTGAGATAGAGAGC 728
Query 565 GATAGTGACTATTCTCCCGAGAACCCGGACACAGCCTCTACCTCTGTTGAATCTGTTGAG 624
|| ||||| |||||||||||||||| | ||||||||| ||||||||||| ||||||
Sbjct 729 GACAGTGAGTATTCTCCCGAGAACCTACCCTCAGCCTCTATATCTGTTGAATCCGTTGAG 788
Query 625 GTGGTGAATCCAACAACAAGCATGACAAGCAGGCAGAGAAGTTACAAGAAGAAGACCATT 684
|||||||||||||||||||||| | |||| ||| | ||||||||| ||||||||||
Sbjct 789 GTGGTGAATCCAACAACAAGCA-G----GCAG--AGA-A-GTTACAAGAGGAAGACCATT 839
Query 685 GAGAATCCAGAACTATATTTGGATGATCCAAACAATATTTGCTTTGAGACGTGTCTTAAG 744
||||||||| | || ||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 840 GAGAATCCACATCTGTATTTGGATGATCCAAACAATGTCTGTTTTGAGACGTGTCTTAAG 899
Query 745 CTTAGAAAGTTTGAGCTGTTAGTTGATGCGCAGTTTGTGAAAGACTACAGCTTGAAATTC 804
|||||||||||||||||||||||| |||| ||||| |||||||||||| |||||| ||||
Sbjct 900 CTTAGAAAGTTTGAGCTGTTAGTTCATGCACAGTTGGTGAAAGACTACGGCTTGATATTC 959
Query 805 GGCGACAAGGTTGACTATATCGACGGATATGGAAAACTAACCGCGACAATGACGAAATGG 864
||||||| ||||||||||| ||||||||||||||||||||||||| || ||| || |||
Sbjct 960 AGCGACAATGTTGACTATATTGACGGATATGGAAAACTAACCGCGAAAACGACCAAGTGG 1019
Query 865 GCAGATCAACGTGTTTGCATAAAGAAGTGGCAGAAAATATGCGATAGAAAC-AGTTTGAC 923
||||||||||| ||||||||||| || ||||||||||||||||| |||||| |||| ||
Sbjct 1020 GCAGATCAACGGGTTTGCATAAACAAATGGCAGAAAATATGCGAGAGAAACCAGTTC-AC 1078
Query 924 AGAGAATGACTCCATCTTATGCGAAGTTCTCCGCAACGAAGACAAAGTGGTTTATGCAAT 983
|||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 1079 AGAGAATGACTCCATCCTATGTGAAATTCTCCGCAACGAGGACAAAGTGGTTTATGCAAT 1138
Query 984 CAAGATTCACATCTTCCGTGATGCAGCAGCAGCTAGCACTTGA 1026
|||||||||||||||||| |||||||||||| |||||||||
Sbjct 1139 CAAGATTCACATCTTCCGCGATGCAGCAGCA---AGCACTTGA 1178
Score = 60.2 bits (32), Expect = 4e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1 ATGTGGGCAACGAAGTCGCGTCGGTGTGCCGT 32
||||||||||||||||||||||||||||||||
Sbjct 54 ATGTGGGCAACGAAGTCGCGTCGGTGTGCCGT 85
> AT3G06220.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr3:1883616-1884953 REVERSE LENGTH=723
Length=723
Score = 399 bits (216), Expect = 2e-110
Identities = 335/391 (86%), Gaps = 13/391 (3%)
Strand=Plus/Plus
Query 41 CTTCCATGGCTTCCAGTGATGTTCTTCCTCGATTCTTCACTGT-TTTCCTCTCCCAGT-A 98
|||| ||||||||| ||||||| |||||||| |||| |||||| ||| || | || ||
Sbjct 138 CTTCAATGGCTTCCGGTGATGTACTTCCTCGCTTCTACACTGTCTTT-CT-TTCCTGTGT 195
Query 99 CAGCTCCGAA-TCCATGGTGATACCACGTTCTTACTACGAACATTTACCACGTCGGTTGC 157
||| ||| || || || |||||||| | |||||||||||||||||||| ||||| || |
Sbjct 196 CAGTTCC-AACTCTTTGCTGATACCAAGGTCTTACTACGAACATTTACCGCGTCGTTTAC 254
Query 158 CCAAAACTGCCATTCTCGTGGGAACTGGTGGAAGATTTTGGAAAGTAGCAATGACGAGCA 217
||||||| || |||||| |||||||||||||||| |||||||||||||||||| |||||
Sbjct 255 CCAAAACAGCGATTCTCACGGGAACTGGTGGAAGAGTTTGGAAAGTAGCAATGATGAGCA 314
Query 218 GGCGAGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTGGCTGATAACGAGTTAA 277
|||||||||||||||||| | || |||||||| |||||||||||| ||||||||| |||
Sbjct 315 AGCGAGAGCAAGTGTATTTGGCACGAGGCTGGGAAAATTTCGTGGCCGATAACGAGCTAA 374
Query 278 AAGATGGAGAATTCTTAACTTTTGTGTTTGATGGGCACAAAAGTTATGAAGTAAGTATCT 337
|||||||||| ||||| || ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 375 AAGATGGAGAGTTCTTGACGTTTGTTTTTGATGGGTACAAAAGTTATGAAGTAAGTATCT 434
Query 338 ATGGTCGTGG-AGATTGCAAAGAGACTCGAGCAGTCATTCAAGTTGAAGAGATCTCTGAT 396
||||||| || || | |||||||||| ||||||||| |||| ||||||||||||||||||
Sbjct 435 ATGGTCGCGGTAGCT-GCAAAGAGACGCGAGCAGTCGTTCATGTTGAAGAGATCTCTGAT 493
Query 397 GACGATACAGAAGATT-ACAGCGTTTCTCTT 426
|| | | ||||| | | ||| || |||||||
Sbjct 494 GA-G-T-CAGAA-AGTGACAACGATTCTCTT 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5