BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317484
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06220.1 | Symbols: | AP2/B3-like transcriptional factor fa... 763 0.0
AT3G06160.2 | Symbols: | AP2/B3-like transcriptional factor fa... 436 7e-122
> AT3G06220.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr3:1883616-1884953 REVERSE LENGTH=723
Length=723
Score = 763 bits (413), Expect = 0.0
Identities = 487/522 (93%), Gaps = 7/522 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCCGGTGATGTACTTCCTCGTTTCTACACTGTCTTTCTTTCCAATGTCAGTTCC 60
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 143 ATGGCTTCCGGTGATGTACTTCCTCGCTTCTACACTGTCTTTCTTTCCTGTGTCAGTTCC 202
Query 61 AACTCTTTGAAGCTGATACCAAGGGT-TTACTACGAACATTTACCGCGTCGGTTGCCCAA 119
|||||||| ||||||||||| ||| |||||||||||||||||||||||| || |||||
Sbjct 203 AACTCTTT---GCTGATACCAA-GGTCTTACTACGAACATTTACCGCGTCGTTTACCCAA 258
Query 120 AACAGCGATTCTCACGGGAACTGGTGGAAGATTTTGGAAAGTAGCAATGCTGAGCAAGCG 179
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 259 AACAGCGATTCTCACGGGAACTGGTGGAAGAGTTTGGAAAGTAGCAATGATGAGCAAGCG 318
Query 180 AGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTGGCGGATAACGATCTAAAAGA 239
||||||||||||||| | || |||||||| |||||||||||| |||||||| ||||||||
Sbjct 319 AGAGCAAGTGTATTTGGCACGAGGCTGGGAAAATTTCGTGGCCGATAACGAGCTAAAAGA 378
Query 240 TGGAGAGTTCTTGACGTTTGTGTTTGATGGGCACAAAAGTTATGAAGTAAGTATATATGG 299
||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 379 TGGAGAGTTCTTGACGTTTGTTTTTGATGGGTACAAAAGTTATGAAGTAAGTATCTATGG 438
Query 300 TCGCGG-AGAATGCAAAGAGACACGAGCAGTCATTCAAGTTGAAGAGATCTCTGATGAGA 358
|||||| || ||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 439 TCGCGGTAG-CTGCAAAGAGACGCGAGCAGTCGTTCATGTTGAAGAGATCTCTGATGAGT 497
Query 359 CAGAAAGTGACAACGATTCTCTTGGTAGCCTTGTTGACGTAACACCCATGCCAGTGGAAG 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 498 CAGAAAGTGACAACGATTCTCTTGGTAGCCTTGTTGACGTAACACCCATGCCAGCGGAAG 557
Query 419 AGAACTCTGATGATACAGAAGGTGACAATGATTCTGGTGATAGCGTTGTTGATGTAACAC 478
|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 558 AGAACTCTGATGATACTGAAGGTGACAATGATTCTTGTGATAGCGTTGTTGACGTAACTC 617
Query 479 CCATGCCAGTGGAAGAGATAAGTGATGCGAGTGAGAGTGACT 520
|||||||||||||||||||||||||||| ||||| |||||||
Sbjct 618 CCATGCCAGTGGAAGAGATAAGTGATGCAAGTGATAGTGACT 659
> AT3G06160.2 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr3:1864273-1867267 FORWARD LENGTH=1253
Length=1253
Score = 436 bits (236), Expect = 7e-122
Identities = 346/396 (87%), Gaps = 19/396 (5%)
Strand=Plus/Plus
Query 1 ATGGCTTCCGGTGATGTACTTCCTCGTTTCTACACTGTCTTTCT-TTCCAATGTCAGTTC 59
||||||||||||||||| |||||| | |||| ||||||||| || | ||| || ||| ||
Sbjct 231 ATGGCTTCCGGTGATGTTCTTCCTAGATTCTTCACTGTCTTCCTCTCCCATTG-CAGCTC 289
Query 60 C-AACTCTTTGAAGCTGATACCAAGGGT-TTACTACGAA-CATTTACCGCGTCGGTTGCC 116
| || || || | ||||||||| ||| ||||||| || | |||||| |||| ||||||
Sbjct 290 CGAA-TCCATG--G-TGATACCAA-GGTCTTACTAC-AATCTTTTACCACGTCCGTTGCC 343
Query 117 CAAAACAGCGATTCTCA-CGGGAACTGGTGGAAGATTTTGGAAAGTAGCAATG-CTGAGC 174
||| || |||||||||| | ||||||||||||||||||||||||||||||||| | ||||
Sbjct 344 CAAGACTGCGATTCTCATC-GGAACTGGTGGAAGATTTTGGAAAGTAGCAATGAC-GAGC 401
Query 175 AAGCGAGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTGGCGGATAACGA-TCT 233
|||| ||||||||||||||||||||||||||||||||||||||| || |||||| | | |
Sbjct 402 AAGCAAGAGCAAGTGTATTTTGAACAAGGCTGGGGAAATTTCGTTGCTGATAACCAGT-T 460
Query 234 AAAAGATGGAGAGTTCTTGACGTTTGTGTTTGATGGGCACAAAAGTTATGAAGTAAGTAT 293
|||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 461 AAAAGAGGGAGAATTCTTAACTTTTGTGTTTGATGGGCACAAAAGTTATGAAGTAAGTAT 520
Query 294 ATATGGTCGCGGAGAATGCAAAGAGACACGAGCAGTCATTCAAGTTGAAGAGATCTCTGA 353
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 521 CTATGGTCGTGGAGATTGCAAAGAGACTCGAGCAGTCATTCAAGTTGAAGAGATCTCTGA 580
Query 354 TGAGACAGAA-AGTGACAACGATTCTCTTGGTAGCC 388
||| |||||| | |||||||| ||||||| |||||
Sbjct 581 TGATACAGAAGA-TGACAACGTTTCTCTTCATAGCC 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25267775941
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5