BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317500
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18670.1 | Symbols: BMY3, BAM9 | beta-amylase 3 | chr5:62259... 547 9e-155
> AT5G18670.1 | Symbols: BMY3, BAM9 | beta-amylase 3 | chr5:6225956-6228132
FORWARD LENGTH=1926
Length=1926
Score = 547 bits (296), Expect = 9e-155
Identities = 526/636 (83%), Gaps = 20/636 (3%)
Strand=Plus/Plus
Query 709 CTTTGGGGACTCAGCGGTCCGCACGATGCTCCTTATTATGATCAACGGCCTAATTCAGCT 768
|||||||| ||| | ||||| |||||||||||| ||| ||||||| ||||||||| ||
Sbjct 1065 CTTTGGGGTCTCGGTGGTCCTCACGATGCTCCTGCTTACGATCAACAGCCTAATTCCTCT 1124
Query 769 CCATTCTTCTCGGATGGTGGATCATGGGAATCGGAATATGGTGATTTCTTCCTTG-CTTG 827
|||||||||| || || || ||||||||||| | || || |||||||| |||| ||||
Sbjct 1125 TCATTCTTCTCAGACGGCGGGTCATGGGAATCTCAGTACGGCGATTTCTT-CTTGTCTTG 1183
Query 828 GTATTCGTCTCTTCTCGTCTCCCACGCAGACCGAGTTCTTTCTC-TTGCTTCTTCTGTAT 886
|||||||||||||||| |||||||||||||||||| || || | ||||||| |||| ||
Sbjct 1184 GTATTCGTCTCTTCTCACCTCCCACGCAGACCGAGTCCTCTC-CGTTGCTTCATCTGCAT 1242
Query 887 TTAGCGGCACAGGATTGCCTCTATGCGGGCAGTTACCTCTCTTGCATCAATGGCACAAGC 946
||||||| | ||| |||||||||| ||| || |||||||||| || |||||||||||||
Sbjct 1243 TTAGCGGGATTGGAGTGCCTCTATGTGGGAAGCTACCTCTCTTACACCAATGGCACAAGC 1302
Query 947 TACGTTC-CAGGCCTTCCGAGTCAACAGCTGGATTTTACTG--C-AATGGAGACAATGAT 1002
|| | || || ||||| |||| |||||||||||| ||| | | ||| | | | | ||
Sbjct 1303 TAAGATCTCA-TCCTTCTGAGTTAACAGCTGGATTCTACAGCTCTAAT-G-GTC-AGGAC 1358
Query 1003 AGGTATGAGGCTGTTGCAGAGACCTTTGCAAAGAACTCTTGTAGAATGATACTGCCTGGG 1062
||||| |||||| | ||||||| |||||||||||||||||||||||||||| | || ||
Sbjct 1359 AGGTACGAGGCTATCGCAGAGATCTTTGCAAAGAACTCTTGTAGAATGATAATACCAGGA 1418
Query 1063 ATGGATTTATCAGACGAGTATCAATCGCC-GAAATCTCTCTCGAGCCCCGAGTCATTGCT 1121
||||| |||| |||||| | ||||| || ||| ||||||||||||||||||||||| ||
Sbjct 1419 ATGGACCTATCCGACGAGCACCAATCACCTGAA-TCTCTCTCGAGCCCCGAGTCATTACT 1477
Query 1122 TGCCCACATCAAGACTTGTTGCAAGAAACACGGAGTCGTCGTTTCAGGACAAAACTCATC 1181
|| ||||||||| |||| ||||||||||| |||||||| || ||||| |||||||||||
Sbjct 1478 TGGCCACATCAAAACTTCCTGCAAGAAACAAGGAGTCGTTGTCTCAGGGCAAAACTCATC 1537
Query 1182 CGAACCAAA--CCTTGGCGGGTTTGAGAAGATCAAAGAGAACCTAAAGGACGAGAATGCA 1239
| | || ||| || |||||||||| |||| ||||| || ||||| ||||||| |
Sbjct 1538 C-ACCCCGGTTCCT-GGTGGGTTTGAGAGGATCGTTGAGAATCTGAAGGATGAGAATGTA 1595
Query 1240 GCGA-TAGATCTGTTCACGTACCAGAGAATGGGAGCACTTTTCTTTTCCCCAGATCATTT 1298
| || | ||||||||||| |||||||||||||||||||||||||| || ||||| |||||
Sbjct 1596 G-GAATTGATCTGTTCACTTACCAGAGAATGGGAGCACTTTTCTTCTCTCCAGAGCATTT 1654
Query 1299 CCATGCCTTCACAGAGTTTGTCCGGAACCTTAGCCA 1334
|||||| ||||||| |||||||||||||| |||||
Sbjct 1655 CCATGCTTTCACAGTCTTTGTCCGGAACCTGAGCCA 1690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5