BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg317500 Length=1362 Score E Sequences producing significant alignments: (Bits) Value AT5G18670.1 | Symbols: BMY3, BAM9 | beta-amylase 3 | chr5:62259... 547 9e-155 > AT5G18670.1 | Symbols: BMY3, BAM9 | beta-amylase 3 | chr5:6225956-6228132 FORWARD LENGTH=1926 Length=1926 Score = 547 bits (296), Expect = 9e-155 Identities = 526/636 (83%), Gaps = 20/636 (3%) Strand=Plus/Plus Query 709 CTTTGGGGACTCAGCGGTCCGCACGATGCTCCTTATTATGATCAACGGCCTAATTCAGCT 768 |||||||| ||| | ||||| |||||||||||| ||| ||||||| ||||||||| || Sbjct 1065 CTTTGGGGTCTCGGTGGTCCTCACGATGCTCCTGCTTACGATCAACAGCCTAATTCCTCT 1124 Query 769 CCATTCTTCTCGGATGGTGGATCATGGGAATCGGAATATGGTGATTTCTTCCTTG-CTTG 827 |||||||||| || || || ||||||||||| | || || |||||||| |||| |||| Sbjct 1125 TCATTCTTCTCAGACGGCGGGTCATGGGAATCTCAGTACGGCGATTTCTT-CTTGTCTTG 1183 Query 828 GTATTCGTCTCTTCTCGTCTCCCACGCAGACCGAGTTCTTTCTC-TTGCTTCTTCTGTAT 886 |||||||||||||||| |||||||||||||||||| || || | ||||||| |||| || Sbjct 1184 GTATTCGTCTCTTCTCACCTCCCACGCAGACCGAGTCCTCTC-CGTTGCTTCATCTGCAT 1242 Query 887 TTAGCGGCACAGGATTGCCTCTATGCGGGCAGTTACCTCTCTTGCATCAATGGCACAAGC 946 ||||||| | ||| |||||||||| ||| || |||||||||| || ||||||||||||| Sbjct 1243 TTAGCGGGATTGGAGTGCCTCTATGTGGGAAGCTACCTCTCTTACACCAATGGCACAAGC 1302 Query 947 TACGTTC-CAGGCCTTCCGAGTCAACAGCTGGATTTTACTG--C-AATGGAGACAATGAT 1002 || | || || ||||| |||| |||||||||||| ||| | | ||| | | | | || Sbjct 1303 TAAGATCTCA-TCCTTCTGAGTTAACAGCTGGATTCTACAGCTCTAAT-G-GTC-AGGAC 1358 Query 1003 AGGTATGAGGCTGTTGCAGAGACCTTTGCAAAGAACTCTTGTAGAATGATACTGCCTGGG 1062 ||||| |||||| | ||||||| |||||||||||||||||||||||||||| | || || Sbjct 1359 AGGTACGAGGCTATCGCAGAGATCTTTGCAAAGAACTCTTGTAGAATGATAATACCAGGA 1418 Query 1063 ATGGATTTATCAGACGAGTATCAATCGCC-GAAATCTCTCTCGAGCCCCGAGTCATTGCT 1121 ||||| |||| |||||| | ||||| || ||| ||||||||||||||||||||||| || Sbjct 1419 ATGGACCTATCCGACGAGCACCAATCACCTGAA-TCTCTCTCGAGCCCCGAGTCATTACT 1477 Query 1122 TGCCCACATCAAGACTTGTTGCAAGAAACACGGAGTCGTCGTTTCAGGACAAAACTCATC 1181 || ||||||||| |||| ||||||||||| |||||||| || ||||| ||||||||||| Sbjct 1478 TGGCCACATCAAAACTTCCTGCAAGAAACAAGGAGTCGTTGTCTCAGGGCAAAACTCATC 1537 Query 1182 CGAACCAAA--CCTTGGCGGGTTTGAGAAGATCAAAGAGAACCTAAAGGACGAGAATGCA 1239 | | || ||| || |||||||||| |||| ||||| || ||||| ||||||| | Sbjct 1538 C-ACCCCGGTTCCT-GGTGGGTTTGAGAGGATCGTTGAGAATCTGAAGGATGAGAATGTA 1595 Query 1240 GCGA-TAGATCTGTTCACGTACCAGAGAATGGGAGCACTTTTCTTTTCCCCAGATCATTT 1298 | || | ||||||||||| |||||||||||||||||||||||||| || ||||| ||||| Sbjct 1596 G-GAATTGATCTGTTCACTTACCAGAGAATGGGAGCACTTTTCTTCTCTCCAGAGCATTT 1654 Query 1299 CCATGCCTTCACAGAGTTTGTCCGGAACCTTAGCCA 1334 |||||| ||||||| |||||||||||||| ||||| Sbjct 1655 CCATGCTTTCACAGTCTTTGTCCGGAACCTGAGCCA 1690 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67067928120 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5