BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317521
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06570.1 | Symbols: | Galactose oxidase/kelch repeat superf... 881 0.0
> AT3G06570.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:2047305-2048553 REVERSE LENGTH=1249
Length=1249
Score = 881 bits (477), Expect = 0.0
Identities = 639/714 (89%), Gaps = 24/714 (3%)
Strand=Plus/Plus
Query 1 ATGTCGTCCCCGCCGG-AGAAGAAGAGGAAGACAGCGGCTACCAC-GCCGCAATC-GCAA 57
|||| ||||||||||| | ||||||||||||| || ||| || | |||| || || |
Sbjct 22 ATGTTGTCCCCGCCGGTA-AAGAAGAGGAAGATAGTGGC-GCCGCAATCGCAGTCGGC-A 78
Query 58 CCGACCTCGATTCAGTCGCTTCCCGATGATTTGGTATTGAGCATCGTCGCTCGCGTCCCG 117
|| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 79 TCGGCCTCGTTTCAGTCGCTTCCCGATGATTTGATATTGAGCATCGTCGCTCGCGTCCCG 138
Query 118 AGATTGTACCATCAGACACTCTCACTCGTCTGCAAGAGCTTTCGATCTCTCCTAGTTTCA 177
||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 139 AGATTGTACCATCGGACAGTCTCGCTCGTCTGCAAGAGCTTTCGATCTCTTCTAGTTTCA 198
Query 178 CCGGAGCTTTACGTGGCCCGATCACTCTCGGGCCACATCGAGAGCTGTCTCTATCTGTGC 237
|||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||| |
Sbjct 199 CCGGAGCTTTACAAGGCCCGATCAGTCTCAGGCCACACCGAGAGCTGTCTCTATCTGTCC 258
Query 238 ATAG-GATGCGATACTGATTATCGTATGTTCACACTCTGCCGGAAACCTGATCAAACCCT 296
|||| | || || |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 259 ATAGCG-TGTTATCCTGATTATCGCATGTTCACCCTCTGCCGGAAACCTGATCAAACCCT 317
Query 297 ---GACCAGT---GAGGAGGAGAAGAAGAAATCAAATGGTTATGT-TTTGGCTCCAGTCC 349
|||||| |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 318 AACCACCAGTGAGGAGGAGGAGAAGAAGAAATCAAATGGTTAT-TATTTGGCTCCAGTCC 376
Query 350 CAGCTCCAGATTCTCATCCTGCCTACTT-TACGAGTCTCGTCGCGGTTGGCTCTGATATC 408
||| ||||||||||||||||| |||||| | ||||||||||| ||||||| |||||||||
Sbjct 377 CAGATCCAGATTCTCATCCTGTCTACTTCT-CGAGTCTCGTCACGGTTGGTTCTGATATC 435
Query 409 TACAACATTGCCGGTTCGCACGGCTCCTCTCGCGTCTCGATTCTGGATTGCCGGTCAAAC 468
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 436 TACAACATTGCCGGTTCGCACGCCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCAAAC 495
Query 469 ACGTGGCGCGAGGCTCCCAGCTTGGGCGTGGAGCTAACCTCAGTTTCTGCTACCGTCATT 528
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||| ||
Sbjct 496 ACGTGGCGCGAGGCTCCGAGATTGGGCGTGGAGCTAACCTCAGTTTCTGCTAGCGTCCTT 555
Query 529 GATCGAAAGATATATGTAGTAGGAAGGTACACAGATGA-G--GAATCT-ATTTTCAAAAA 584
||||||||||||| ||||||||||| |||| ||||||| | |||||| | | ||| ||
Sbjct 556 GATCGAAAGATATTTGTAGTAGGAATGTACGCAGATGATGAAGAATCTGAATC-CAAGAA 614
Query 585 -GACTTCTTTGAGGTGTTGGACACAAAAACACAAACTTGGGATCCTCAGCCCTTCAATTG 643
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 615 CGACTTCTTTGAGGTGTTGGACACAGAAACACACACTTGGGATCCTCAGCCCTTCAATTG 674
Query 644 CAGCGAGACACAAGACAAGTTTTTCTCCTGCAGAACCGCATTTATTGACGGAAA 697
|||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 675 CAGCGAGACAAAAGACAAGTTTTTAAACTGCAGAACCGCATTTATTGACGGAAA 728
Score = 429 bits (232), Expect = 3e-119
Identities = 355/413 (86%), Gaps = 14/413 (3%)
Strand=Plus/Plus
Query 702 GGTTGCTTACAATTCCAAGGAAAGTAGATGGGACCCGGTTCAAACGAAGTTGGCT-TGTA 760
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 762 GGTTGCTTACAATTCCAAGGAAAGTAGATGGGAACCGGTTCAAACGAAGATGGCTATGT- 820
Query 761 TAATGTTGAAAGATTCGCATTGCCAGATAGGGAATGTTATGTA-TTGTTCTGTTGACGGA 819
||||| || ||||| ||||||||||| |||||||| || || || ||||||||
Sbjct 821 CCATGTTTAATGATTCTTATTGCCAGATACACAATGTTATCTACTT-AGCTTTTGACGGA 879
Query 820 AGGATCAGATGGTGTGAC-ACTGAGGTAAGCAGTTGGAGATTGGTCAAGGGTTTGCTAGA 878
||||||||||||| |||| | || | ||| | ||||| || ||| |||||||||||||
Sbjct 880 AGGATCAGATGGTATGACGA-TGCGCTAAACTGTTGGGGAGACGTCCAGGGTTTGCTAGA 938
Query 879 ACTAGGTAGCTTCCCTTGTGGTCCTTTTTGTGTTAAATTGGCTGATTATCGTGGAAACAT 938
||| |||| | ||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 939 ACTGGGTAACATCCCTCATGGTCCTTCTTGTGTTAGATTGGCTGATTATCGTGGAAACAT 998
Query 939 AGCGGTTTTCTGGGTCAAGA-ATTTTCCTG---ATGATAAC--CAAA-GGAAGATGATTT 991
|||||||||||| || ||| |||| |||| ||||| || |||| ||||||||||||
Sbjct 999 TGCGGTTTTCTGGTTC-AGATATTTACCTGATAATGATGACTACAAATGGAAGATGATTT 1057
Query 992 TGTGTGCCGAGATTGCGCTTGAAAGACGCACTAGTTTTGAGATTTGGGGGAAAGTTTTGT 1051
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1058 GGTGTGCCGAGATTGCGCTTGAAAGACGCACTAGTTGGGAGATTTGGGGGAAAGTTTTGT 1117
Query 1052 GGTTTGATCATGTTCTTACTGTCCCTACAGATTATGAGTTAATCAAGGCTCtt 1104
||||||||| |||||||||||||||| ||||||||||||| |||| ||||||
Sbjct 1118 GGTTTGATCCTGTTCTTACTGTCCCTGCAGATTATGAGTTTGTCAAAGCTCTT 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5