BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317561
Length=213
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06985.1 | Symbols: LCR44 | low-molecular-weight cysteine-ri... 257 2e-68
> AT3G06985.1 | Symbols: LCR44 | low-molecular-weight cysteine-rich
44 | chr3:2205392-2205706 FORWARD LENGTH=213
Length=213
Score = 257 bits (139), Expect = 2e-68
Identities = 189/213 (89%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 1 ATGAATTGCAAGATTGGATTCATGAGCTTCGTGGTGATCACTTCAATAGTCATCCTATTT 60
|||||||||||||||| ||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 1 ATGAATTGCAAGATTGAATTCATGAGCTTCCTCGTGATGACTTCAATAGTCATCCTATTT 60
Query 61 CTCTTGGTTTCAGGGAAAGTTGAAGCTAAACCCAAATGCATTGGATCATGTGAAATACTT 120
||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct 61 CTCTTTGTTTCAGGGAAAGTTGAAGCTGAACCCCAATGCATTGGATCATGTGAAATGCTT 120
Query 121 GGTGACTGTGGCATC-GCTTGCATGAAGAAGGGATACTTATTTGGCCAATGCGTTGGCTG 179
| ||||||| || | ||||| || | || ||||||||||||||||||||||||||||||
Sbjct 121 GCTGACTGTAACA-CGGCTTGTATCAGGATGGGATACTTATTTGGCCAATGCGTTGGCTG 179
Query 180 GAGTAA-TCCCAATATATGTTGTTGCGGCCATT 211
|| || |||| |||| ||||||||| |||||
Sbjct 180 GAA-AACTCCCGATATGTGTTGTTGCAACCATT 211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9500604561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5