BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317584
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07220.1 | Symbols: | SMAD/FHA domain-containing protein |... 1321 0.0
AT3G07260.1 | Symbols: | SMAD/FHA domain-containing protein |... 896 0.0
> AT3G07220.1 | Symbols: | SMAD/FHA domain-containing protein
| chr3:2297886-2299572 FORWARD LENGTH=1210
Length=1210
Score = 1321 bits (715), Expect = 0.0
Identities = 884/962 (92%), Gaps = 26/962 (3%)
Strand=Plus/Plus
Query 1 ATGGCTACATCCGTTGGAAGCGGGAGCGATGTGGAGGTCGGATTTGCGAAGCTTCAAGGT 60
|||||||| | ||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 83 ATGGCTACGGCTGTTGGTGGCGGAAGCGATGTGGAGGTTGGATTTGCGAAGCTTCAAGGT 142
Query 61 GAAGATTTCGAATACTATATGCAGTCATACTCCATTATACTCGGCCGGAATTCTAAGAAA 120
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 143 GAGGATTTCGAGTACTATATGCAGTCTTACTCCATTATACTCGGCCGGAATTCTAAGAAA 202
Query 121 GCGACCGTCGACGTTGATCTCTCATCCCTCGGCGGCGGAATGAACATTTCTCGCAACCAC 180
|| |||||||||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct 203 GCCACCGTCGACGTTGATCTCTCATCCCTCGGCGGTGGGATGAACATCTCGCGCAACCAC 262
Query 181 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTCCTTGGCAAAAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTCCTTGGCAAAAAT 322
Query 241 GGCTGCCTCGTTGAAGGTGTTCTTCATCTCCCTGGGAATCCTAACGTCAAGCTCGATTCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GGCTGCCTCGTTGAAGGTGTTCTTCATCTCCCTGGGAATCCTAACGTCAAGCTCGATTCA 382
Query 301 CAGGACCTTTTGCAGATTGGTGACAAAGAGTTCTACTTCCTGCTTCCGGTTCGGAGTATC 360
|| |||||||||||||| || ||||||||||||||||| || || ||||||||||| |||
Sbjct 383 CAAGACCTTTTGCAGATCGGAGACAAAGAGTTCTACTTTCTCCTACCGGTTCGGAGCATC 442
Query 361 CTAGGCGGGCCATTGGGACCCAGGCACCACGTCTCAGGGCAGACTAGTGTTGTTCCGTAC 420
|||||||||| |||||||| |||||||||||||| ||||| || ||||||||||| |||
Sbjct 443 TTAGGCGGGCCGTTGGGACCTAGGCACCACGTCTCTGGGCAAACAAGTGTTGTTCCATAC 502
Query 421 CATAACTATCATTCGGGTCCAGGTTCCGGGTCGGGTAAGAAGGCCGTCCGGAGTAGAGAG 480
||||| ||||| |||||||||||||| |||||||||||||||| |||| |||||||||||
Sbjct 503 CATAATTATCAGTCGGGTCCAGGTTCTGGGTCGGGTAAGAAGGGCGTCAGGAGTAGAGAG 562
Query 481 TTGTATGAGTACGATGATGA------------CGACGACGATGAGGAGGA---TATCAGG 525
|||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 563 TTGTATGAGTACGATGATGAAGATGATGATGACGACGACGATGAGGAGGACGATATGAGA 622
Query 526 GGAAGTGGAAAGAAAACAAGGAGAGATGGATATGAAGTAGTATATGCTTCCGGAGAGAAG 585
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 623 GGAAGTGGAAAGAAAACAAGGAGAGATGGACATGAAGTAGTATATGCTTCCGGAGAGAAG 682
Query 586 AAGAGA---------TCAAAGGTAGATCGTGAAGCTGATGATCAACAATTTTTGCAACTG 636
|||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 683 AAGAGAGAGGGAAGATCAAAGGTAGATCGTGAAGCTGATGATCAACAATTTTTGCAGCTG 742
Query 637 GAGGAGAAAGATGTTGTATCATCTGTTGCCACTGTGCTCTCCGATTTGTGTGGTCCGGGA 696
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 743 GAGGAAAAAGATGTTGTATCGTCTGTTGCCACTGTGCTTTCCGATTTGTGTGGTCCGGGA 802
Query 697 GACTGGATGCCCATGGAAAAACTTCATTTGGTGATATTAAAGGAGTATGGAAACGTATGG 756
|| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 803 GAGTGGATGCCTATGGAAAAACTTCATTCGGTGATATTAAAGGAGTATGGAAACGTATGG 862
Query 757 CATCACAGTCGAGTAAGAAGATACCTGACC-CAAGAAGACTGGGCTATCCCTGAAGCAAA 815
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 863 CATCACAGTCGAGTAAGAAGATACCT-ATCACAAGAAGACTGGGCTATCCCTGAAGCAAA 921
Query 816 GGGTAAACCATGGTACGGTTTGCTAATGCTACTGAGAAAATACCCGGAGCATTTCGTCAT 875
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 922 AGGTAAACCATGGTACGGTTTGCTGATGCTGCTGAGAAAATACCCGGAGCATTTCGTCAT 981
Query 876 CAACACTAGATCAAAGGGAAGAGTTACCCTTCAATTCGTTTCCCTCGTTTCCCTACTCCC 935
|||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 982 CAACACGAGATCAAAGGGAAGAGTTACCCTTGAATTCGTTTCCCTCGTTACCCTACTCTC 1041
Query 936 AT 937
||
Sbjct 1042 AT 1043
> AT3G07260.1 | Symbols: | SMAD/FHA domain-containing protein
| chr3:2309704-2310788 FORWARD LENGTH=914
Length=914
Score = 896 bits (485), Expect = 0.0
Identities = 594/645 (92%), Gaps = 14/645 (2%)
Strand=Plus/Plus
Query 1 ATGGCTACATCCGTTGGAAGCGGGAGCGATGTGGAGGTCGGATTTGCGAAGCTTCAAGGT 60
||||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1 ATGGCTACAGCCGTTGGAAGCGGGAGCGATGTAGAGGTTGGATTTGCGAAGCTCCAAGGT 60
Query 61 GAAGATTTCGAATACTATATGCAGTCATACTCCATTATACTCGGCCGGAATTCTAAGAAA 120
|| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 61 GAGGATTTCGAGTACTATATGCAGTCTTACTCCATTATTCTCGGCCGGAATTCTAAGAAA 120
Query 121 GCGACCGTCGACGTTGATCTCTCATCCCTCGGCGGCGGAATGAACATTTCTCGCAACCAC 180
||||||||||||| || |||||||| |||||||| || |||||||||||||||||||||
Sbjct 121 TCGACCGTCGACGTCGACCTCTCATCTCTCGGCGGTGGGATGAACATTTCTCGCAACCAC 180
Query 181 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTCCTTGGCAAAAAT 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTACTTGGCAAAAAT 240
Query 241 GGCTGCCTCGTTGAAGGTGTTCTTCATCTCCCTGGGAATCCTAACGTCAAGCTCGATTCA 300
|||||| ||||||||||||| || |||||||||||||| || ||||||||||||||||||
Sbjct 241 GGCTGCTTCGTTGAAGGTGTCCTCCATCTCCCTGGGAACCCCAACGTCAAGCTCGATTCA 300
Query 301 CAGGACCTTTTGCAGATTGGTGACAAAGAGTTCTACTTCCTGCTTCCGGTTCGGAGTATC 360
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 301 CAGGACCTTTTGCAGATTGGTGACAAGGAGTTCTACTTCCTGCTTCCGGTTTGGAGTATC 360
Query 361 CTAGGCGGGCCATTGGGACCCAGGCACCACGTCTCAGGGCAGACTAGTGTTGTTCCGTAC 420
|||||||| ||||||||||||||||||||||||| |||| || ||| |||||||||||||
Sbjct 361 CTAGGCGGTCCATTGGGACCCAGGCACCACGTCTTAGGGAAGGCTACTGTTGTTCCGTAC 420
Query 421 CATAACTATCATTCGGGTCCAGGTTCCGGGTCGGGTAAGAA-GGCCGTCCGGAGTAGAGA 479
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 421 CATAATTATCATTCGGGTCCAGGTTCCGGGTCGGGTAAGAATGGC-GTCCGGAGTAGAGA 479
Query 480 GTTGTATGAGTACGATGATGACGACGACGATGA-G-G-AGGATATCAGGGGAAGTGGAAA 536
||||||||||||||||||||| ||||||||||| | | |||||||||| || ||||||||
Sbjct 480 GTTGTATGAGTACGATGATGAAGACGACGATGAAGAGGAGGATATCAGAGGCAGTGGAAA 539
Query 537 GAAAACAAGGAGAGATGGATATGAAGTAGTATATGCTTCCGGAGAGAAGAAGAGA----- 591
||||||| ||||||||||| |||||| ||||||||| || |||||||||||||||
Sbjct 540 GAAAACATGGAGAGATGGACATGAAGGAGTATATGCCTCTGGAGAGAAGAAGAGAGAGGG 599
Query 592 ----TCAAAGGTAGATCGTGAAGCTGATGATCAACAATTTTTGCA 632
||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 AAGATCAAAGGCAGATCGTGAAGCTGATGATCAACAATTTTTGCA 644
Score = 335 bits (181), Expect = 5e-91
Identities = 202/212 (95%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 729 GATATTAAAGGAGTATGGAAACGTATGGCATCACAGTCGAGTAAGAAGATACCTGACC-C 787
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 676 GATATTAAAGGAGTATGGAAACGTATGGCATCACAGTCGAGTAAGAAGATACCT-ATCAC 734
Query 788 AAGAAGACTGGGCTATCCCTGAAGCAAAGGGTAAACCATGGTACGGTTTGCTAATGCTAC 847
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 735 AAGAAGACTGGGCTATCCCTGAAGCAAAAGGTAAACCATGGTACGGTTTGCTGATGCTGC 794
Query 848 TGAGAAAATACCCGGAGCATTTCGTCATCAACACTAGATCAAAGGGAAGAGTTACCCTTC 907
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 795 TGAGAAAATACCCGGAGCATTTCGTCATCAACACGAGATCAAAGGGAAGAGTTACCCTTG 854
Query 908 AATTCGTTTCCCTCGTTTCCCTACTCCCATAA 939
||||||||||||||||| |||||||| |||||
Sbjct 855 AATTCGTTTCCCTCGTTACCCTACTCTCATAA 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5