BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317589
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07320.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2158 0.0
> AT3G07320.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr3:2332022-2334074 REVERSE LENGTH=1834
Length=1834
Score = 2158 bits (1168), Expect = 0.0
Identities = 1310/1379 (95%), Gaps = 7/1379 (1%)
Strand=Plus/Plus
Query 7 CTTCTACATCTTC-TTGCTCTGTCTCTGCTAATCTCTGTTTCAGGAGCAAAGTTCTCCGG 65
|||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 159 CTTCTACATC-TCTTTGCTCTGTCTCTGCTCATCTCTGTTTCAGGAGCAAAGTTCTCCGG 217
Query 66 CCGGCCAGGAGTCAACTACGGCCAGCTCGGAAACAACCTCCCATCTCCGGCCGACTCAGT 125
|||||||||| ||||||| ||||||||||||||||||||||| || ||| ||||||||||
Sbjct 218 CCGGCCAGGAATCAACTATGGCCAGCTCGGAAACAACCTCCCGTCACCGTCCGACTCAGT 277
Query 126 CAACCTCATAAAATCCCTAAACGCAAAACGAGTCAAACTCTACGACGCTAACCCAAAAAT 185
||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 278 CAACCTCATCAAGTCCCTAAACGCGAAACGCGTCAAACTCTACGACGCTAACCCAAAAAT 337
Query 186 CCTCACCGCCTTAAACGGCACCGACATTACCGTCTCCGTCATGGTCCCAAACGAGCTCAT 245
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 338 CCTCGCCGCGTTAAACGGCACCGACATTACCGTCTCCGTCATGGTCCCAAACGAGCTCCT 397
Query 246 CGTCAACATTTCCAAATCCGAATCACTCTCCGACGACTGGATCCGATCCAACATCCTCCC 305
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 398 CGTCAACATCTCCAAATCCGCATCACTCTCCGACGACTGGATCCGATCCAACATCCTCCC 457
Query 306 GTTTTACCCAACCACCAAGATCCGTTACCTCCTCGTCGGCAACGAGATCCTCTCTTCACC 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 458 GTTTTACCCAACCACCAAGATCCGTTACCTCCTCGTCGGCAACGAGATCCTCTCTTTACC 517
Query 366 AGACTCTGAGCTCAAATCTTCACTCGTTCCCGCAATGCGCAAGATCCAACGGTCCTTAAA 425
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 518 AGACTCTGAGCTCAAATCTTCACTCGTTCCCGCAATGCGCAAGATCCAACGCTCCTTAAA 577
Query 426 GTCTCTCGGCGTTAAAAAAGTCAAAGTAGGGACTACACTCGCCGTCGACGTTCTCCAATC 485
||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||
Sbjct 578 GTCTCTCGGCGTTAAAAAAGTCAAAGTCGGTACTACACTCGCCACCGACGTTCTCCAATC 637
Query 486 TTCGTTTCCTCCGTCTAGCGGCGAGTTTCGGTCGGATATCTCCGGTTTAGTTATGAAACC 545
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 638 TTCGTTTCCTCCGTCTAGCGGCGAGTTTCGGGAGGATATCTCCGGTTTAATTATGAAACC 697
Query 546 GATGCTCCAGTTCTTAAACCGGACTAAATCGTTCGTATTCGTTGATGTTTACCCGTATTT 605
||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 698 GATGCTCCAATTCTTAAACCGGACCAAATCTTTCCTATTCGTTGATGTTTACCCGTATTT 757
Query 606 CGCGTGGGCTCAAGATCCGACCCATGTGGATCTCGATTACGCCATTTTCGAATCTACCAA 665
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 758 CGCGTGGGCACAAGATCCGACCCATGTGGATCTCGATTACGCGATTTTCGAATCTACCAA 817
Query 666 CGTCACCGTCACGGATCCAGTCACGAATCTGACCTACCACAACCTGTTCGATCAGATGAT 725
|||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||
Sbjct 818 CGTCACCGTCACGGATCCGGTTTCGAATCTGACATACCACAACCTATTCGATCAGATGAT 877
Query 726 TGACGCTTTCGTCTTCGCTATGAAACGACTCGGGTATCCGGATCTTCGGATCTGGGTCGC 785
|||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 878 TGACGCTTTCGTCTTCGCCATGAAACGAGTCGGGTATCCGGATATTCGGATCTGGGTCGC 937
Query 786 GGAAACGGGTTGGCCCAATAACGGTGACTGCGACCAAATTGGAGCGAATATTTACAACGC 845
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 938 GGAAACGGGTTGGCCCAATAACGGTGACTACGACCAAATTGGAGCGAATATTTACAACGC 997
Query 846 CGCCACTTACAATCGCAATGTTGTCAAGAAACTCGCCGCTGACCCGCCCGTAGGTTCGCC 905
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 998 CGCTACTTACAATCGCAATGTTGTCAAGAAACTCGCCGCTGACCCGCCCGTAGGTACGCC 1057
Query 906 CGCCCGACCCGGAAAGGTTCTACCGGCGTTTGTATTCGCACTTTACAACGAGAATCAGAA 965
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1058 CGCCCGACCCGGAAAGGTTCTACCGGCGTTTGTATTCGCACTTTACAACGAAAATCAGAA 1117
Query 966 AACGGGTCCGGGTACGGAGCGGCATTTCGGACTTCTACATCCCAACGGGACTCAGGTCTA 1025
|||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||
Sbjct 1118 AACGGGTCCGGGTACGGAGCGGCATTTCGGACTTTTACATCCGAATGGGACTCAGGTTTA 1177
Query 1026 CGGGATTGATTTGTCGGGGAAGACGACGGAGTACAAGGAATCGTTGCCGGCGCCGGAGAA 1085
||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 1178 CGGGATTGATTTGTCGGGGAAGACG--G-AGTACAAGGAATCATTGCCGGCGCCGGAGAA 1234
Query 1086 TAACGAGTTTTACAAAGGGAAGATTTGGTGCGTGGTGGCTAAAGGAGCGAATTGGACTCA 1145
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 TAACGACCTGTACAAAGGGAAGATTTGGTGCGTGGTGGCTAAAGGAGCGAATTGGACTCA 1294
Query 1146 GCTAGGTGATGCTCTATCGTACGCTTGCTCACAGGGAAATAATACCTGTGACCCGATTCA 1205
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1295 GCTAGGTGATGCTCTATCGTACGCTTGCTCACAGGGGAATAATACCTGTGACCCGATTCA 1354
Query 1206 ACGCGGAGGCCCATGTCACAAACCCGATTTGACCGTTTTGCACGCCAGCTACGCCTTTAG 1265
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1355 ACGCGGAGGCCCATGTCAGAAACCTGATTTGACCGTTTTGCACGCCAGTTACGCCTTTAG 1414
Query 1266 CTCCTATTGGGCCCAATTTCGTAAGACCGGTGGGA-CTTGCTCTTTCAACGGCTTAGCCA 1324
||| |||||||||||||||||||||| ||| |||| ||||||| |||||||||||||| |
Sbjct 1415 CTCTTATTGGGCCCAATTTCGTAAGATCGG-GGGAACTTGCTCCTTCAACGGCTTAGCTA 1473
Query 1325 CCCAAACCATTAAAGATCCAAGCTACGGACGCTGTGAGTTTCCGAGCGTGACATTGTGA 1383
| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1474 CACAAACCATCAAAGATCCAAGTTACGGACGATGTGAGTTTCCGAGCGTGACATTGTGA 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5