BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg317651

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G08000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   710    0.0  


> AT3G08000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr3:2554829-2555929 REVERSE LENGTH=737
Length=737

 Score =  710 bits (384),  Expect = 0.0
 Identities = 410/423 (97%), Gaps = 0/423 (0%)
 Strand=Plus/Plus

Query  7    AATGGTATTGAGCTATTAGTGAGACGAGTTTCAGCGATACCTCAACACTCGATTTCTTCT  66
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  110  AATGGTATTGAGCTATTAGTGAGACGAGTTTCAGCGATACCTCAACACTCTATTTCTTCT  169

Query  67   AGCTCCCATTTTCTTCCTCAATTTTGCACATCTTCTTCTGCATCCCCCAGTTCCAAGCTA  126
            |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  170  AGCTTCCATTTTCTTCCTCAATTTTGCACTTCTTCTTCTGCATCGCCCAGTTCCAAGCTA  229

Query  127  TTCATCGGAGGATTGTCCTGGTCTGTGGATGAGCAATCTCTCAAAGACGCTTTCTCTTCC  186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  230  TTCATCGGAGGATTGTCCTGGTCTGTGGATGAGCAATCTCTCAAAGACGCTTTCTCTTCC  289

Query  187  TTTGGAGAGGTTGCAGAAGTTAGGATTGCGTACGACAAAGGAAGTGGGAGATCAAGAGGA  246
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  290  TTTGGAGAGGTTGCAGAAGTTAGGATTGCGTATGACAAAGGAAGTGGGAGATCAAGAGGA  349

Query  247  TTCGGTTTTGTTGATTTTGCAGAGGAAGGTGATGCTCTATCTGCAAAAGACGCCATGGAT  306
            || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  350  TTTGGTTTTGTTGATTTTGCAGAAGAAGGTGATGCTCTATCTGCAAAAGACGCCATGGAT  409

Query  307  GGAAAGGGATTATTGGGTCGGCCGTTGAGAATAAGTTTTGCCCTTGAAAGAGTGCGTGGT  366
            |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct  410  GGAAAGGGATTATTGGGTCGACCGTTGAGGATAAGTTTTGCCCTTGAAAGAGTGCGTGGT  469

Query  367  GGTCCTGTGGTTGTTCCTCGTCTTGAGAAATCGAAGAGAGACAGAGAACGAGTCTTCAAG  426
            ||||||||||||||||| ||||||| ||||||||||||||| |||||| |||||||||||
Sbjct  470  GGTCCTGTGGTTGTTCCACGTCTTGGGAAATCGAAGAGAGAAAGAGAAAGAGTCTTCAAG  529

Query  427  TGA  429
            |||
Sbjct  530  TGA  532



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5