BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg317651 Length=429 Score E Sequences producing significant alignments: (Bits) Value AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 710 0.0 > AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2554829-2555929 REVERSE LENGTH=737 Length=737 Score = 710 bits (384), Expect = 0.0 Identities = 410/423 (97%), Gaps = 0/423 (0%) Strand=Plus/Plus Query 7 AATGGTATTGAGCTATTAGTGAGACGAGTTTCAGCGATACCTCAACACTCGATTTCTTCT 66 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 110 AATGGTATTGAGCTATTAGTGAGACGAGTTTCAGCGATACCTCAACACTCTATTTCTTCT 169 Query 67 AGCTCCCATTTTCTTCCTCAATTTTGCACATCTTCTTCTGCATCCCCCAGTTCCAAGCTA 126 |||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 170 AGCTTCCATTTTCTTCCTCAATTTTGCACTTCTTCTTCTGCATCGCCCAGTTCCAAGCTA 229 Query 127 TTCATCGGAGGATTGTCCTGGTCTGTGGATGAGCAATCTCTCAAAGACGCTTTCTCTTCC 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 TTCATCGGAGGATTGTCCTGGTCTGTGGATGAGCAATCTCTCAAAGACGCTTTCTCTTCC 289 Query 187 TTTGGAGAGGTTGCAGAAGTTAGGATTGCGTACGACAAAGGAAGTGGGAGATCAAGAGGA 246 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 290 TTTGGAGAGGTTGCAGAAGTTAGGATTGCGTATGACAAAGGAAGTGGGAGATCAAGAGGA 349 Query 247 TTCGGTTTTGTTGATTTTGCAGAGGAAGGTGATGCTCTATCTGCAAAAGACGCCATGGAT 306 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 350 TTTGGTTTTGTTGATTTTGCAGAAGAAGGTGATGCTCTATCTGCAAAAGACGCCATGGAT 409 Query 307 GGAAAGGGATTATTGGGTCGGCCGTTGAGAATAAGTTTTGCCCTTGAAAGAGTGCGTGGT 366 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 410 GGAAAGGGATTATTGGGTCGACCGTTGAGGATAAGTTTTGCCCTTGAAAGAGTGCGTGGT 469 Query 367 GGTCCTGTGGTTGTTCCTCGTCTTGAGAAATCGAAGAGAGACAGAGAACGAGTCTTCAAG 426 ||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||||||||| Sbjct 470 GGTCCTGTGGTTGTTCCACGTCTTGGGAAATCGAAGAGAGAAAGAGAAAGAGTCTTCAAG 529 Query 427 TGA 429 ||| Sbjct 530 TGA 532 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20358438345 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5