BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg317662 Length=708 Score E Sequences producing significant alignments: (Bits) Value AT3G08560.1 | Symbols: VHA-E2 | vacuolar H+-ATPase subunit E is... 1142 0.0 > AT3G08560.1 | Symbols: VHA-E2 | vacuolar H+-ATPase subunit E isoform 2 | chr3:2600130-2601907 FORWARD LENGTH=708 Length=708 Score = 1142 bits (618), Expect = 0.0 Identities = 679/709 (96%), Gaps = 2/709 (0%) Strand=Plus/Plus Query 1 ATGAACGATGCAGATGTGTCAAAGCAGATACAGCAGATGGTCCGGTTTATCCGCCAAGAA 60 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1 ATGAACGATGCGGATGTGTCAAAGCAGATACAGCAGATGGTCCGGTTCATCCGGCAAGAA 60 Query 61 GCAGAAGAGAAAGCAAATGAGATCTCCATCTCCGCCGAGGAGGAATTCAACATCGAAAGA 120 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 GCAGAAGAGAAAGCAAACGAGATCTCCATCTCCGCCGAGGAGGAATTCAACATAGAAAGA 120 Query 121 CTTCAGCTTCTCGAGTCTGCCAAGCGTAAGCTCCGTCAAGACTACGACCGCAAGCTCAAG 180 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 CTTCAGCTTCTCGAGTCTGCCAAGCGTAAGCTCCGTCAAGACTATGACCGCAAGCTCAAG 180 Query 181 CAGGTCGATATCCGCAAGCGAATCGACTACTCCACGCAACTTAATGCAAGTAGGATTAAG 240 ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 181 CAGGTTGATATCCGCAAGCGAATCGACTACTCCACACAACTGAATGCAAGTAGGATTAAG 240 Query 241 TACCTTCAAGCACAAGACGACGTTGTCACCGCCATGAAAG-CGTCAGCAGCTAAGGATCT 299 ||||||||||| ||||| ||||||||||| |||||||||| | || |||||||||||||| Sbjct 241 TACCTTCAAGCTCAAGATGACGTTGTCACTGCCATGAAAGAC-TCCGCAGCTAAGGATCT 299 Query 300 TCTTCGTGTCTCCAACGACAAGAACAATTACAAGAAGCTTCTTAAGAGTCTCATCATTGA 359 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCTCCGTGTCTCCAACGACAAGAACAATTACAAGAAGCTTCTTAAGAGTCTCATCATTGA 359 Query 360 GAGTTTGCTGCGCCTGAAAGAGCCATCAGTGCTGCTGCGATGCAGAGAGATGGACAAGAA 419 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 360 GAGTTTGCTGCGCCTGAAAGAGCCATCAGTGCTGCTGAGATGCAGAGAAATGGACAAGAA 419 Query 420 GGTTGTTGAATCAGTCATCGAGGATGCTAAAAGACTGTACGCGGAAAAAGCCAAAGTCGG 479 |||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||| Sbjct 420 GGTTGTTGAATCGGTCATTGAAGATGCTAAAAGACAGTACGCGGAAAAAGCCAAAGTCGG 479 Query 480 GTCTCCTAAGATCACCATCGACGACAAGGTCTTCCTCCCTCCACCTCCTAATCCTAAGCT 539 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 480 GTCTCCTAAGATCACCATCGACGAAAAGGTCTTCCTCCCTCCACCTCCTAATCCGAAGCT 539 Query 540 CCCTGATTCCCACGATCCTCACTGCTCGGGCGGGGTGGTGCTGGCCTCTCAAGACGGCAA 599 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 540 CCCTGATTCCCACGACCCTCACTGCTCGGGTGGGGTGGTGCTGGCCTCTCAAGACGGCAA 599 Query 600 GATTGTCTGTGAAAACACTTTAGATGCACGCCTTGACGTCGCCTTCAGACAGAAGCTTCC 659 ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 600 GATTGTCTGCGAGAACACTTTAGACGCACGCCTTGACGTCGCCTTCAGACAGAAGCTTCC 659 Query 660 CCAGATCCGGACGCGCCTCGTTGGAGCTCCTGAAACCTCCAGAGTATGA 708 |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 660 CCAGATCCGGACGCGCCTCGTTGGAGCTCCTGAAACCTCCAGAGCATGA 708 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34309922401 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5