BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317662
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08560.1 | Symbols: VHA-E2 | vacuolar H+-ATPase subunit E is... 1142 0.0
> AT3G08560.1 | Symbols: VHA-E2 | vacuolar H+-ATPase subunit E
isoform 2 | chr3:2600130-2601907 FORWARD LENGTH=708
Length=708
Score = 1142 bits (618), Expect = 0.0
Identities = 679/709 (96%), Gaps = 2/709 (0%)
Strand=Plus/Plus
Query 1 ATGAACGATGCAGATGTGTCAAAGCAGATACAGCAGATGGTCCGGTTTATCCGCCAAGAA 60
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGAACGATGCGGATGTGTCAAAGCAGATACAGCAGATGGTCCGGTTCATCCGGCAAGAA 60
Query 61 GCAGAAGAGAAAGCAAATGAGATCTCCATCTCCGCCGAGGAGGAATTCAACATCGAAAGA 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GCAGAAGAGAAAGCAAACGAGATCTCCATCTCCGCCGAGGAGGAATTCAACATAGAAAGA 120
Query 121 CTTCAGCTTCTCGAGTCTGCCAAGCGTAAGCTCCGTCAAGACTACGACCGCAAGCTCAAG 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CTTCAGCTTCTCGAGTCTGCCAAGCGTAAGCTCCGTCAAGACTATGACCGCAAGCTCAAG 180
Query 181 CAGGTCGATATCCGCAAGCGAATCGACTACTCCACGCAACTTAATGCAAGTAGGATTAAG 240
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 181 CAGGTTGATATCCGCAAGCGAATCGACTACTCCACACAACTGAATGCAAGTAGGATTAAG 240
Query 241 TACCTTCAAGCACAAGACGACGTTGTCACCGCCATGAAAG-CGTCAGCAGCTAAGGATCT 299
||||||||||| ||||| ||||||||||| |||||||||| | || ||||||||||||||
Sbjct 241 TACCTTCAAGCTCAAGATGACGTTGTCACTGCCATGAAAGAC-TCCGCAGCTAAGGATCT 299
Query 300 TCTTCGTGTCTCCAACGACAAGAACAATTACAAGAAGCTTCTTAAGAGTCTCATCATTGA 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTCCGTGTCTCCAACGACAAGAACAATTACAAGAAGCTTCTTAAGAGTCTCATCATTGA 359
Query 360 GAGTTTGCTGCGCCTGAAAGAGCCATCAGTGCTGCTGCGATGCAGAGAGATGGACAAGAA 419
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 360 GAGTTTGCTGCGCCTGAAAGAGCCATCAGTGCTGCTGAGATGCAGAGAAATGGACAAGAA 419
Query 420 GGTTGTTGAATCAGTCATCGAGGATGCTAAAAGACTGTACGCGGAAAAAGCCAAAGTCGG 479
|||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||
Sbjct 420 GGTTGTTGAATCGGTCATTGAAGATGCTAAAAGACAGTACGCGGAAAAAGCCAAAGTCGG 479
Query 480 GTCTCCTAAGATCACCATCGACGACAAGGTCTTCCTCCCTCCACCTCCTAATCCTAAGCT 539
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 480 GTCTCCTAAGATCACCATCGACGAAAAGGTCTTCCTCCCTCCACCTCCTAATCCGAAGCT 539
Query 540 CCCTGATTCCCACGATCCTCACTGCTCGGGCGGGGTGGTGCTGGCCTCTCAAGACGGCAA 599
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 CCCTGATTCCCACGACCCTCACTGCTCGGGTGGGGTGGTGCTGGCCTCTCAAGACGGCAA 599
Query 600 GATTGTCTGTGAAAACACTTTAGATGCACGCCTTGACGTCGCCTTCAGACAGAAGCTTCC 659
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 GATTGTCTGCGAGAACACTTTAGACGCACGCCTTGACGTCGCCTTCAGACAGAAGCTTCC 659
Query 660 CCAGATCCGGACGCGCCTCGTTGGAGCTCCTGAAACCTCCAGAGTATGA 708
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 CCAGATCCGGACGCGCCTCGTTGGAGCTCCTGAAACCTCCAGAGCATGA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5