BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317667
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48235.1 | Symbols: | transposable element gene | chr3:1786... 556 5e-158
AT3G42255.1 | Symbols: | transposable element gene | chr3:1441... 359 2e-98
> AT3G48235.1 | Symbols: | transposable element gene | chr3:17863754-17865925
FORWARD LENGTH=2172
Length=2172
Score = 556 bits (301), Expect = 5e-158
Identities = 342/362 (94%), Gaps = 1/362 (0%)
Strand=Plus/Plus
Query 1 ATGGCAATTTCTTCGGTAAAGAATAGATTTGAACAAATGATGACTTTTAAAAGTGTATTT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1704 ATGGCAATTTCTTCGGTAAAGAATAGTTTTGAACAAATGATGACTTTTAAAAGTGTATTT 1763
Query 61 GGATTTTTGTTTGATTCATTGAAATTAAAATCACTTGATGAAAGTGAATTAAAAGAGCAT 120
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1764 GGATTTTTGTTTGATTTATTGAAATTAAAATCACTTGATGAAGGTGAATTAAAAGAGCAT 1823
Query 121 TGCATTAATTTTCACAAAACATTTTCTCATGATAATGTCTCGGATGTTGATTTTAATGAt 180
||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 1824 TGCATTATTTTTCACAAAACATTTTCTCATGAGAATGTCTCGGATATTGATTTAAATGAT 1883
Query 181 tttttttCAGAATTAAAAGTTTTGCAAATGTGTTTATCCCAAGTGTCAATGACACCTAGT 240
||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1884 CTTTTT-CGGAATTAAAAGTTTTGCAAATGACTTTATACCAAGTGTCAATGACACCTAGT 1942
Query 241 GAAGTGCTTGAGTTTGTAGAAAATGTAGGTTGTTATCCGAATGTTTCAATTGCTTATCGA 300
||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 1943 GAAGTGCCTGAGTTTGTAGAAAATGTAGGATGTTATCCCAATGTTTCAATCGCTTATCGA 2002
Query 301 ATCCTATTAACAACACCCGTGACGGTAGCTTCGGCCGAGAGAAGCTTCTCAAAATTGAAG 360
|||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 2003 ATCCTATTAACAACACCCGTGACGGTGGCTTAGACCGAGAGAAGCTTCTCAAAATTGAAG 2062
Query 361 TT 362
||
Sbjct 2063 TT 2064
> AT3G42255.1 | Symbols: | transposable element gene | chr3:14416062-14419442
FORWARD LENGTH=3381
Length=3381
Score = 359 bits (194), Expect = 2e-98
Identities = 236/256 (92%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 108 ATTAAAAGAGCATTGCATTAATTTTCACAAAACATTTTCTCATGATAATGTCTCGGATGT 167
||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 2963 ATTAAAAAAGCATTGCATTATTTTTCACAAAACATTTTCTCATGAGAATGTCTCGGATGT 3022
Query 168 TGATTTTAATGAttttttttCAGAATTAAAAGTTTTGCAAATGTGTTTATCCCAAGTGTC 227
|||||| |||||| | |||| ||||||||||||||||||| | |||||| ||||||||
Sbjct 3023 TGATTTAAATGATCTCTTTT-GGAATTAAAAGTTTTGCAAAGGACTTTATCTCAAGTGTC 3081
Query 228 AATGACACCTAGTGAAGTGCTTGAGTTTGTAGAAAATGTAGGTTGTTAT-CCGAATGTTT 286
||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 3082 AATGACACCTAGTGAAGTGCTTGAGTTTGTAGAAAATGTAGGTTGTTATGCC-AGTGTTT 3140
Query 287 CAATTGCTTATCGAATCCTATTAACAACACCCGTGACGGTAGCTTCGGCCGAGAGAAGCT 346
|||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 3141 CAATCGCTTATCGAATCCTATTAACAACACCCATGACGGTGGCTTTGGCCGAGAGAAGCT 3200
Query 347 TCTCAAAATTGAAGTT 362
||| ||||||||||||
Sbjct 3201 TCTTAAAATTGAAGTT 3216
Score = 200 bits (108), Expect = 1e-50
Identities = 112/114 (98%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1 ATGGCAATTTCTTCGGTAAAGAATAGATTTGAACAAATGATGACTTTTAAAAGTGTATTT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1978 ATGGCAATTTCTTCGGTAAAGGATAGATTTGAACAAATGATGACTTTTAAAAGTGTATTT 2037
Query 61 GGATTTTTGTTTGATTCATTGAAATTAAAATCACTTGATGAAAGTGAATTAAAA 114
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2038 GGATTTTTGTTTGATTCATTGAAATTAAAATTACTTGATGAAAGTGAATTAAAA 2091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5