BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317692
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08900.1 | Symbols: RGP3, RGP | reversibly glycosylated poly... 970 0.0
AT5G15650.1 | Symbols: RGP2, ATRGP2 | reversibly glycosylated p... 333 2e-90
AT5G50750.1 | Symbols: RGP4 | reversibly glycosylated polypepti... 281 8e-75
> AT3G08900.1 | Symbols: RGP3, RGP | reversibly glycosylated polypeptide
3 | chr3:2708086-2709714 REVERSE LENGTH=1350
Length=1350
Score = 970 bits (525), Expect = 0.0
Identities = 564/583 (97%), Gaps = 2/583 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCAATTGTATTCTTCCGTGAAACCCACGCCAATGTTGAAAGATGAGCTAGACATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGCAATTGTATTCTTCCGTGAAACCCACGCCAATGTTGAAAGATGAGCTAGACATT 60
Query 61 GTGATACCCACCATTCGAAACCTTGACTTCCTTCAGATGTGGCGACCCTTCTTTGAACAG 120
|||||||| || ||||||||||| ||||||||| ||||||||||||| |||||||| |||
Sbjct 61 GTGATACCTACGATTCGAAACCTCGACTTCCTTGAGATGTGGCGACCTTTCTTTGAGCAG 120
Query 121 TACCATCTGATCATTGTTCAAGATGGTGATCCTTCGAAAGTCATCAACATTCCAG-AAGG 179
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 121 TATCATTTGATCATTGTTCAAGATGGTGATCCTTCGAAAGTCATCAACATTCCAGTAGGG 180
Query 180 TTTCGACTACGAGCTCTACAACAGGAACGACATCAATCGAATCTTGGGTCCCAAGGCCTC 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTT-GACTACGAGCTCTACAACAGGAACGACATCAATCGAATCTTGGGTCCCAAGGCCTC 239
Query 240 TTGCATTTCCTTCAAGGACTCTGCTTGCCGTTGCTTCGGTTACATGGTCTCCAAAAAGAA 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 TTGCATTTCCTTCAAGGACTCTGCTTGTCGTTGCTTCGGTTACATGGTCTCCAAAAAGAA 299
Query 300 GTACATCTACACCATTGATGATGATTGCTTTGTTGCAAAGGATCCAACTGGGAAAGAGAT 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GTACATCTACACCATTGATGATGATTGCTTTGTTGCAAAGGATCCAACAGGGAAAGAGAT 359
Query 360 CAATGCGCTTGAGCAGCATATCAAGAACCTCTTATCTCCATCAACCCCGCATTTCTTTAA 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 CAATGCGCTTGAGCAGCATATCAAGAACCTCTTATCTCCATCAACTCCGCATTTCTTTAA 419
Query 420 CACACTTTATGATCCATACAGAGATGGGGCAGACTTTGTTCGTGGATACCCTTTTAGTAT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 CACACTTTATGATCCATACAGAGATGGGGCAGACTTTGTTCGTGGATACCCTTTCAGTAT 479
Query 480 GCGCAAAGGTGCCATAACTGCGGTATCTCATGGCCTCTGGCTCAACATTCCTGACTATGA 539
|||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 GCGCGAAGGTGCCATAACCGCGGTCTCTCATGGCCTCTGGCTCAACATTCCTGACTATGA 539
Query 540 TGCTCCCACTCAGCTTGTGAAGCCTCTTGAGAAAAATTCCAGG 582
||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 TGCTCCCACTCAGCTTGTGAAACCTCTTGAGAAAAATTCCAGG 582
Score = 828 bits (448), Expect = 0.0
Identities = 491/512 (96%), Gaps = 2/512 (0%)
Strand=Plus/Plus
Query 615 GTATGTTGATGCAGTCATGACCATTCCCAAAGGAACACTTTTTCCTATGTGTGGTATGAA 674
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 582 GTATGTTGATGCAGTCATGACCATTCCCAAAGGAACTCTTTTTCCTATGTGTGGTATGAA 641
Query 675 CCTCGCTTTTGACCGTGAGTTGATTGGTCCGGCCATGTACTTTGGGCTTATGGGTGACGG 734
||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||
Sbjct 642 CCTTGCTTTTGACCGTGAGCTGATTGGTCCGGCTATGTACTTTGGGCTTATGGGTGATGG 701
Query 735 ACAGCCAATCGGACGCTATGACGACATGTGGGCTGGTTGGTGTGTCAAGGTGATATGTGA 794
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 ACAGCCAATTGGACGCTATGACGACATGTGGGCTGGTTGGTGTGTCAAGGTGATATGTGA 761
Query 795 CCATATGGGATGGGGAGTGAAGACGGGTTTGCCTTACAAATGGCACAGCAAAGCCAGCAA 854
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 762 CCACATGGGATGGGGAGTGAAGACGGGTTTGCCTTACATATGGCACAGCAAAGCCAGCAA 821
Query 855 CCCATTCGTGAACCTGAAAAAGGAATACAACGGAATCTTTTGGCAGGAAGAGGCGATACC 914
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 822 CCCATTCGTGAACCTGAAAAAGGAATACAACGGAATATTTTGGCAGGAAGAGGCGATTCC 881
Query 915 GTTCTTTCAATCTGTGACTCTTCCTAAAGAATGCACTTCGGTGCAGCAATGCTACCTCGA 974
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 882 GTTCTTTCAATCCGTGACTCTTCCTAAAGAGTGCACTTCGGTGCAGCAATGCTACCTCGA 941
Query 975 GCTGGCCAAGCTCGTGAAAGAGAAACTTGGGAAGGTTGATCCTTACTTCATCACACTTGC 1034
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GCTGGCCAAGCTCGTGAGAGAGAAACTTGGGAAGGTTGATCCTTACTTCATCACACTTGC 1001
Query 1035 AACTGGAATGGTCACTTGGATCGAAGCTTGGGAGGAGCTTAACTCCGAGGAGAGAACTGA 1094
||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1002 AACTGGAATGGTCACCTGGATCGAAGCTTGGGAGGAGCTTAACTCCGCGGAGGGAACTGA 1061
Query 1095 GGCTAAGGCACCAAACGGCAATAAAG-AGTAA 1125
|||| |||||||||| ||||| ||| |||||
Sbjct 1062 GGCTGAGGCACCAAAAGGCAA-AAATTAGTAA 1092
> AT5G15650.1 | Symbols: RGP2, ATRGP2 | reversibly glycosylated
polypeptide 2 | chr5:5092157-5094494 FORWARD LENGTH=1530
Length=1530
Score = 333 bits (180), Expect = 2e-90
Identities = 442/565 (78%), Gaps = 31/565 (5%)
Strand=Plus/Plus
Query 16 TCTTCC-GTGAAACCC-ACGCCAATGTTGAAAGATGAGCTAGACATTGTGATACCCACCA 73
|||||| ||| ||||| || || || ||||||||||||| || || ||||| || || |
Sbjct 73 TCTTCCGGTG-AACCCGACTCCGTTGCTGAAAGATGAGCTCGATATCGTGATTCCGACTA 131
Query 74 TTC-GAAACCTTGACTTCCTTC-AGATGTGGCGACCCTTCT-TTGAACAGTACCATCTGA 130
|| ||||||| || |||| || |||||||| | |||| | || | | ||||||||||
Sbjct 132 -TCAGAAACCTCGATTTCC-TCGAGATGTGGAG-GCCTTTTCTTCAGCCTTACCATCTGA 188
Query 131 TCATTGTTCAAGATGGTGATCCTTCGAAAG-TCATCAACAT-T-CCAGAAGGTTTCGACT 187
|||| || || || || ||||| ||| ||| ||| ||| | || ||||||| |||||
Sbjct 189 TCATCGTCCAGGACGGAGATCCATCG-AAGAAGATC--CATGTCCCTGAAGGTTACGACT 245
Query 188 ACGAGCTCTACAACAGGAACGACATCAATCGAATCTTGGGTCCCAAGGCCTCTTGCATTT 247
||||||||||||||||||||||||| || |||||| | || || ||||| ||||| || |
Sbjct 246 ACGAGCTCTACAACAGGAACGACATTAACCGAATCCTCGGACCTAAGGCTTCTTGTATCT 305
Query 248 CCTTCAAGGACTCTGCTTGCCGTTGCTTCGGTTACATGGTCTCCAAAAAGAAGTACATCT 307
| || ||||| |||||||| || ||||| || |||||||| || || |||||||| ||||
Sbjct 306 CGTTTAAGGATTCTGCTTGTCGATGCTTTGGGTACATGGTGTCTAAGAAGAAGTATATCT 365
Query 308 ACACCATTGATGATGATTGCTTTGTTGCAAAGGATCCAACTGGGAAAG-AGATCAATGCG 366
|||||||||||| |||||||| ||||| ||||||||| | || |||| || | || ||
Sbjct 366 TCACCATTGATGACGATTGCTTCGTTGCCAAGGATCCATCAGGCAAAGCAG-TGAACGCT 424
Query 367 CTTGAGCAGCATATCAAGAACCTCTTATCT-CC-ATCAACCCCGCATTT-CTTTAACACA 423
|||||||| || ||||||||||| | ||| || ||| | || | ||| ||| |||||
Sbjct 425 CTTGAGCAACACATCAAGAACCT-TC-TCTGCCCATCGTCTCC-CTTTTTCTTCAACAC- 480
Query 424 CTT-TATGATCCATACAGAGATGGGGCAGACTTT-GTTCGTGGATACCCTTTTAGTATGC 481
||| |||||||| ||| | || || || || ||| || |||||||||||||| ||| | |
Sbjct 481 CTTGTATGATCCTTACCGTGAAGGTGCTGA-TTTCGTCCGTGGATACCCTTTCAGTCTCC 539
Query 482 GCAAAGGTGCCATA-ACTGCGGTATCTCATGGCCTCTGGCTCAACATTCCTGACTATGAT 540
| |||||| | ||||| || || ||||| || ||||||||||| |||||||| |||
Sbjct 540 GTGAAGGTGTT-TCCACTGCTGTTTCCCATGGTCTTTGGCTCAACATCCCTGACTACGAT 598
Query 541 GCTCCC-ACTCAGCTTGTGAAGCCT 564
|| ||| || || || |||||||||
Sbjct 599 GC-CCCGACCCAACTCGTGAAGCCT 622
> AT5G50750.1 | Symbols: RGP4 | reversibly glycosylated polypeptide
4 | chr5:20640992-20642660 FORWARD LENGTH=1359
Length=1359
Score = 281 bits (152), Expect = 8e-75
Identities = 419/543 (77%), Gaps = 38/543 (7%)
Strand=Plus/Plus
Query 40 TTGAAAGATGAGCTAGACATTGTGATACCC-ACCATTC-GAAACCTTGACTTCCTTCAG- 96
|||||||| || || || |||||||| ||| |||| || ||| ||| ||||| || ||
Sbjct 114 TTGAAAGACGATCTGGATATTGTGAT-CCCAACCA-TCAGAAGCCTCGACTTTCTAGAGC 171
Query 97 ATGTGGCGACCCTTCTTTG-AACAGTACCATCTGATCATTGTTCAAGATGGTGATCCTTC 155
| ||| |||| || |||| | || ||||| ||||||||||| |||||||| || |||||
Sbjct 172 A-ATGGAGACCATT-TTTGCACCATTACCACCTGATCATTGTCCAAGATGGAGACCCTTC 229
Query 156 GA--AAGTCAT-CAACATTCCAGAAGGTT-TCGACTACGAGCTCTACAACAGGAACGACA 211
| ||| || | | |||| || |||| | |||||||||||||||||| | || || |
Sbjct 230 CATCAAG--ATCCGA-GTTCCCGAGGGTTAT-GACTACGAGCTCTACAACCGTAATGATA 285
Query 212 TCAATC-GAAT-CTTGGGTCCCAAG-GCCT-CTTGCATTTCCTTCAAGGACT-CTGCTTG 266
|||| | | || ||| ||| ||||| | || ||| || |||| ||| || | || |||
Sbjct 286 TCAA-CAGGATCCTT-GGT-CCAAGAG-CTAATTGTATCTCCTACAAAGA-TGGTGGTTG 340
Query 267 CCGTTGCTTCGG-TTACATGGTCTCCAAAAAGAAGTACATCTACACCATTGATGATGATT 325
|| ||||| || || |||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 341 TCGCTGCTTTGGCTT-CATGGTTTCTAAAAAGAAGTATATCTACACCATTGATGATGATT 399
Query 326 GCTTTGTTGCAAAGGATCCAACTGGGAAAGAGATCAATGCGCTTGAGCAGCATATCAAGA 385
||||||| ||||||||||||| ||||||||| ||||||| | | | ||||| || ||||
Sbjct 400 GCTTTGTGGCAAAGGATCCAAGTGGGAAAGACATCAATGTGATAGCTCAGCACATAAAGA 459
Query 386 ACCTCTTAT-CTCCATCAACCCCGCATTTCTTTAACACACTTTATGATCCATACAGAGAT 444
|||| | | | || ||||| || || | ||| ||||| || ||||| || | ||||||
Sbjct 460 ACCT-TGAAACACCTTCAACACCACACTACTTCAACACTCTCTATGACCCTTTTAGAGAT 518
Query 445 GGGGCAGACTTT-GTTC-GTGGATACCCTTTTAGTATGCGCAAAGGTG-CCATAACTGCG 501
|| | || ||| || | | || || ||||| ||| | | |||||| ||| ||| ||
Sbjct 519 GGAACTGA-TTTCGT-CAGAGGGTATCCTTTCAGTCTAAGGGAAGGTGTCCA-AACCGCC 575
Query 502 GTATCTCATGGCCTCTGGCTCAACATTCCTGACTATGATGCTCCCA-CTCAGCTTGTGAA 560
|||||||||| || ||||||||||| |||||||||||||| |||| | || ||||||||
Sbjct 576 ATATCTCATGGTCTTTGGCTCAACATCCCTGACTATGATGC-CCCAACCCAACTTGTGAA 634
Query 561 GCC 563
|||
Sbjct 635 GCC 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5