BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317721
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09190.1 | Symbols: | Concanavalin A-like lectin family pro... 1463 0.0
AT3G09035.1 | Symbols: | Concanavalin A-like lectin family pro... 918 0.0
AT3G54080.1 | Symbols: | Concanavalin A-like lectin family pro... 71.3 2e-11
> AT3G09190.1 | Symbols: | Concanavalin A-like lectin family protein
| chr3:2821479-2822687 REVERSE LENGTH=1209
Length=1209
Score = 1463 bits (792), Expect = 0.0
Identities = 885/930 (95%), Gaps = 6/930 (1%)
Strand=Plus/Plus
Query 15 TTTTGACAAGAGTGTTGCTCTGTTTGGAGATTCCAAGCTGGTCAATGACAGTTCTTCGAT 74
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 111 TTTTGACAAGAGTGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTCGAT 170
Query 75 TCAGCTGACTGACTCAGTGAGTCAGAGCGAGGGACGAGTCTTTTATAGGAAACCCATCCA 134
|||||||||||||||||||| || || |||||||||||||||||| | |||||||||| |
Sbjct 171 TCAGCTGACTGACTCAGTGAATCGGACCGAGGGACGAGTCTTTTACAAGAAACCCATCAA 230
Query 135 TCTATTCAAAGGTAAAGAGAAGAACTCGGTTATTTTCTCGACTTACTTCTCGTTTTCGAT 194
||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 231 TCTATTCCAAGGTAAAGAGAGGAACTCCGTTATTTTCTCGACTTACTTCTCGTTTTCGAT 290
Query 195 GCCCAATGAGATTGGTGATGTCTTGGCTTTTGTAATGGTTCCAAGTACTTTGGATCTTAG 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GCCCAATGAGATTGGTGATGTCTTGGCTTTTGTAATGGTTCCAAGTACTTTGGATCTTAG 350
Query 255 TCTGTTTGGTAAGAAAGATTACAGTTCCTCTGCTTTCGGGTTTCTACTAGAGTATGCAAA 314
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 351 TCTGTTTGGTAAGAAAGATTACAGTTCCTCTGCTTTAGGGTTTCTATTAGAGTATGCAAA 410
Query 315 GAACGAGACAGTTGTTGCTTTTGAGTTTGATATCTCCAAGAGAGGAAACCGTGCAAGAAT 374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 411 GAACGAGACAGTTGTTGCTTTTGAGTTTGATATCTCCAAGAGAGGAAACCGTGCAAGAGT 470
Query 375 CTTAATTGGTAGACCTGAATCTGCTAAAATTAGAAATCTTTCGTTTGTGGGTGACTTGAT 434
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 471 CTTAATTGGTAGACCTGAGTCTGCCAAAATTAGAAACCTTTCGTTTGTGGGTGACTTGAT 530
Query 435 GATGAACAATGGAGGGACTTTGAGCTGTATGATTGATTATGAGGCAAGTTCTAAGAGAAT 494
|||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GATGGATGATGGAGGGATTTTGAGCTGTATGATTGATTATGAGGCAAGTTCTAAGAGAAT 590
Query 495 GATGGTTCGATTCAGAAAACCTGGTTCGATAAAGCTGTTTGATCCATTCTTCTCTTTCTC 554
|| |||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||
Sbjct 591 GAGGGTTCGTTTCAGAAAACGTGGTTCGATAAAGATGTTTGATCCGTTCTTCTCTTTCTC 650
Query 555 GGTAGACTTGGAGAAGACTT-GGAAAGGTGGTGAAGTCATGGTGGGTTTAAGCTCTGCTA 613
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 651 GGTAGACTTGGAGAAG-CTTTGGAAAGGTGGTGAAGTCATGGTGGGTTTAAGCTCTGCTA 709
Query 614 ATGGGAACTCTTCCAAGCCACATTTTCTCCATTCATGGAGCTTTGAAATAAGGCATCTTG 673
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 710 ATGGGAACTCTTCCAAGCCACATTTTCTCCATTCATGGAGCTTTGAAATATGGCATCTTG 769
Query 674 ATCCGATATGGGTGCAACCAACGCCATTTGGACCGAATGAAGGTTTGAAGCCGGACGTTT 733
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 770 ATCCGATATGGGTGCAACCAGCGCCATTAGGACCAAATGAAGGTTTGAAGCCGGACGTTT 829
Query 734 CCACGGAAGTGGAAGAGGGCCGAGAGAGA-AGTGAGTGTATATGGAGAATGCTTGGTACT 792
|||||||| |||||||||||||||| | | ||||||||||||||||||||||||||| ||
Sbjct 830 CCACGGAAATGGAAGAGGGCCGAGAAA-ATAGTGAGTGTATATGGAGAATGCTTGGTGCT 888
Query 793 TTGGTCTTGGGTGCAGTATGTGGAGCCTTAGGGGCAATGTCAGCTATGTATCTTTGGACA 852
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 889 CTGGTCTTGGCTGCAGTATGTGGAGCCGTAGGGGCAATGTCAGCTATGTATCTTTGGACT 948
Query 853 ATATGCGGTGTTAGGAGGTCAATGGCCGTGGTTCCAGAGGAATGTGCAGTGAGCATTGTG 912
|| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ATTTGCAGTGTTAGGCGGTCAATGGCCGTGGTTCCAGAGGAATGTGCAGTGAGCATTGTG 1008
Query 913 GTCGTTG-ATGTTAAAGATGGCAAGAAGTA 941
||||||| | ||||||||||||||||||||
Sbjct 1009 GTCGTTGCA-GTTAAAGATGGCAAGAAGTA 1037
> AT3G09035.1 | Symbols: | Concanavalin A-like lectin family protein
| chr3:2758820-2760347 FORWARD LENGTH=1528
Length=1528
Score = 918 bits (497), Expect = 0.0
Identities = 772/900 (86%), Gaps = 38/900 (4%)
Strand=Plus/Plus
Query 16 TTTGACAAGAGTGTTGCTCTGTTTGGAGATTCCAAGCTGGTCAATGACAGTTCTTCGATT 75
||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 365 TTTGACAAGAGGGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTTGATT 424
Query 76 CAGCTGACTGACTCAGTGAGTCAG-AGCGAGGGACGAGTCTTTTATAGGAAACCCATCCA 134
||||||||||||||||||| || | |||| || |||||| |||| | |||||||||| |
Sbjct 425 CAGCTGACTGACTCAGTGACTC-GAAGCGTTGGTCGAGTCGTTTACAAGAAACCCATCAA 483
Query 135 TCTATTCAAAGGTAAAGAGAAGAACTCGGTTAT-TTTCTCGACTTACTTCTCG--TT-TT 190
||| |||||||||||| ||| ||| || | || |||||| ||| |||||||| || ||
Sbjct 484 TCTTTTCAAAGGTAAACAGAGGAATTC-GAGATCTTTCTCTACTCACTTCTCGTTTTCTT 542
Query 191 CGATGCCCAATGAGATT-G-G-TGATGTCTTGGCTTTTGTAATGGTTCCAAGTACTTTGG 247
| ||| |||| |||||| | | |||||||||||||||||||||||||||| || |||||
Sbjct 543 CCATGTCCAACGAGATTGGTGATGATGTCTTGGCTTTTGTAATGGTTCCATCTAGTTTGG 602
Query 248 ATCTTAGTCTGTTTGGTAAGAAAGATTACAGTTCCTCTGCTTTCGGGTTTCTACT-AGAG 306
|||||||||||||||||||||| || |||||||||||||||| || ||| || | | |
Sbjct 603 ATCTTAGTCTGTTTGGTAAGAAGGACAACAGTTCCTCTGCTTTAGGTTTTTTA-TCACAA 661
Query 307 TATGCAAAGAACGAGACAGTTGTTGCTTTTGAGTTTGATATCTCCAAGAGAGGAAACCGT 366
||||||||||||||||||||||||||| | ||||||| |||||||| || ||||||| ||
Sbjct 662 TATGCAAAGAACGAGACAGTTGTTGCTGTCGAGTTTGGTATCTCCAGGACAGGAAACAGT 721
Query 367 GCAAGAATCTTAATTGGTAGACCTGAATCTGCTAAAATTAGAAATCTTTCGTTTGTGGGT 426
|||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 722 GCAAGAATTTTAGTTGGTAGACCTGAATCTGCTGAAATTAGAAACCTTTCGTTTGTGGGT 781
Query 427 GACTTGATGATGAACAATGGAGGGACTTTGAGCTGTATGATTGATTATGAGGCAAGTTCT 486
|||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 782 GACTTGATGATGGACAATGGAAGGACTCTGAGCTGTATGATTGAGTATGAGGCAAGTTCT 841
Query 487 AAGAGAATGATGGTTCGATTCAGAAAACCTGGTTCGATAAAGCTGTTTGATCCATTCTTC 546
||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 842 AAGAGAATGATGGTTCGATTCAGAAAATCTGGTTCGGTAAAGCTGTTTGATCCGTTCTTC 901
Query 547 TCTTTCTCGGTAGACTTGGAGAAGACT-TGGAAAGGTGGTGAAGTCA-TGGTGGGTTTAA 604
||||||||||||||||||| ||| | ||||||||||||||||||| || |||||||||
Sbjct 902 TCTTTCTCGGTAGACTTGGCCAAGT-TATGGAAAGGTGGTGAAGTCACTG-TGGGTTTAA 959
Query 605 GCTCTGCTAATGGGAACTCTTC--C-AAGCCACATTTTCTCCATTCATGGAGCTTTGAAA 661
||||||| |||||||||||||| | ||| |||||||||||||||||||||| |||||||
Sbjct 960 GCTCTGCCAATGGGAACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGATTTGAAA 1019
Query 662 TAAGGCATCTTGATCCGATATGGGTGCAACCAACGCCATTTGGACCGAATGAAGGTTTGA 721
|||| |||| | |||||| ||| |||| || ||| ||| ||||||||||| ||| |
Sbjct 1020 TAAGACATCCTCCTCCGATGTGGATGCATTCAGTGCCGCTTGAACCGAATGAAG-TTTCA 1078
Query 722 AGCCGGACGTTTCCACGGAAGTGGAAGAGGGCCGAGAGAGAAGTGAGTGTATATGGAGAA 781
| ||| | | |||| || || | ||| |||||||||||||| ||| ||
Sbjct 1079 AA--GGAGG-----A-GGAA----AAT-GGTC-GAGGGAGAAGTGAGTGTACGCGGAAAA 1124
Query 782 TGCTTGGTACTTTGGTCTTGGGTGCAG-TATGTGGAGCCTTAGGGGCAATG-TCAGCTAT 839
|||||||| ||||| |||| ||||||| | |||||||||||||||||| || | | | |
Sbjct 1125 TGCTTGGTGCTTTGATCTTTGGTGCAGCT-TGTGGAGCCTTAGGGGCACTGCTGGGTT-T 1182
Query 840 GTATCTTTGGACAATATGCGGTGTTAGGAGGTCAATGGCCGTGGTTCCAGAGGAATGTGC 899
|||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1183 GTATCTCTGGACGATATGCCGTGTTAGGCGGTCAATGGCCGTGGTTCCAGAGGAATGTGC 1242
> AT3G54080.1 | Symbols: | Concanavalin A-like lectin family protein
| chr3:20025267-20027022 FORWARD LENGTH=1756
Length=1756
Score = 71.3 bits (38), Expect = 2e-11
Identities = 58/67 (87%), Gaps = 4/67 (6%)
Strand=Plus/Plus
Query 67 TCTTCGATTCAGCTGACTGACTCAGTGAGTCA-GAGCGA-GGGACGAGTCTTTTATAGGA 124
|||||||||||||||||||||||||||||||| | | | ||| |||||| | |||| ||
Sbjct 314 TCTTCGATTCAGCTGACTGACTCAGTGAGTCACG-GTGGTGGG-CGAGTCATCTATAAGA 371
Query 125 AACCCAT 131
|||||||
Sbjct 372 AACCCAT 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5