BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317726
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09240.1 | Symbols: | Protein kinase protein with tetratric... 2276 0.0
AT5G01060.1 | Symbols: | Protein kinase protein with tetratric... 1146 0.0
> AT3G09240.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr3:2835668-2837956 REVERSE LENGTH=1434
Length=1434
Score = 2276 bits (1232), Expect = 0.0
Identities = 1344/1399 (96%), Gaps = 4/1399 (0%)
Strand=Plus/Plus
Query 125 ATAACAACGAAGAAGATGAAGGAAGTACTTGTCCGATTTTCCGGGAATTCAGCTTGGAAC 184
|||| || |||||||||||||||||||||||||| | ||||| ||| |||||||||||||
Sbjct 38 ATAATAAAGAAGAAGATGAAGGAAGTACTTGTCCTAATTTCCTGGAGTTCAGCTTGGAAC 97
Query 185 AGTTGAGAGTCGCAACTGACGGATTCTCCGCCGGCAACATCGTGTCGGAGCACAACGAGA 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 98 AGTTGAGAGTCGCAACTGACGGATTCTCCGCCGACAACATCGTGTCGGAGCACAACGAGA 157
Query 245 GGGTTCCTAACATCGTCTACAAAGGGAAGCTCAAAGACGGAAGAAAGATCGCCGTCAAAC 304
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 158 GGGTTCCTAACATCGTCTACAAAGGCCAGCTCAACGACGGAAGAAAGATCGCCGTCAAGC 217
Query 305 GGTTTCAAAGGCTTTCATGGCCTGATTCTTTCGAATTCACCGAAGAAGCACAAGCTGTTG 364
|||||||| |||||||||||||||||||||| ||||||| ||| |||||||||||||| |
Sbjct 218 GGTTTCAACGGCTTTCATGGCCTGATTCTTTAGAATTCATCGAGGAAGCACAAGCTGTAG 277
Query 365 GGAGGTGTAGGAGTGAGCATATGGCCAATTTGATCGGTTGTTGCTCAGAAGGTCACGAGA 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GGAGATGTAGGAGTGAGCATATGGCCAATTTGATCGGTTGTTGCTCAGAAGGTCACGAGA 337
Query 425 GGTTGCTCGTTGCTGAGTACATGCCTAATGGAACACTTGCTAAGCATCTCTTTCACTGGG 484
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 338 GGTTGCTTGTTGCTGAGTACATGCCTAATGAAACACTTGCTAAGCATCTCTTTCACTGGG 397
Query 485 AGAAAAGACCAATGAAATGGGAAATGAGATTAAGGGTTGCGTTACATACTGCAACAGCCT 544
|||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||
Sbjct 398 AGAAAAGACCAATGAAGTGGGAAATGAGGTTGAGAGTTGCGTTACATACTGCAACAGCCT 457
Query 545 TGGAGTACTGTAATGATAT-GGGAATAGATTTGTATCACGATCTTAACACCTACAGAATA 603
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TGGAGTACTGTAATGAT-TGGGGAATAGATTTGTATCACGATCTTAACACCTACAGAATA 516
Query 604 TTGTTTGATAAGGTTGGGAATCCTAGGCTGTCTTGTTTCGGTCTCATGAAGTGTAGCCGA 663
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 517 TTGTTTGACAAGGTTGGGAATCCTAGGCTGTCTTGTTTTGGTCTCATGAAGTGTAGCCGA 576
Query 664 GAGGGAAAGAGCTATAGTACCAACTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GAGGGAAAGAGCTATAGTACCAACTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGT 636
Query 724 ACTGTGATACCGGAGAGTGTCACATTTAGCTTCGGGACCTTGTTACTGGATCTTATGAGC 783
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 637 ACTGTGATACCGGAGAGTGTCACATTTAGCTTCGGAACCTTGTTACTGGATCTTATGAGC 696
Query 784 GGCAGACATATTCCACCTAACCATGCACTTGATCTATTCCGTGGTAAAAACTATTTGGTG 843
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 697 GGCAGACATATTCCACCAAACCATGCACTTGATCTGTTCCGTGGTAAAAACTATTTGGTG 756
Query 844 CTAATGGATTCAGCTCTGGATGGTCAATTCTCTGATGAGGATAGAACAGAACTAATCCAT 903
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 757 CTAATGGATTCAGCTCTGGATGGTCAATTCTCTGATGAGGATAGAACAGAACTTATCCAT 816
Query 904 CTAGCTTCCCGCTGTTTCCGGCCTAAACCAGACGAGAGACCAAGTATAAAGTTTCTTATG 963
||||||||||||||||| || ||| ||||||||||||| ||||| |||||||||||||||
Sbjct 817 CTAGCTTCCCGCTGTTTGCGCCCTGAACCAGACGAGAGGCCAAGCATAAAGTTTCTTATG 876
Query 964 TCTGCTCTTTCAAGACTTGAGAAACGAGCTGAGTTATGGCCCAACGTCAACGAAGAAAAC 1023
|| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 877 TCAGCTCTTTCAAGACTTGAGAAAAGAGCTGAGTTATGGCCCAACGTCAAAGAAGAAAAC 936
Query 1024 ATTCCTACTCCATCAGACACTAAACCTGCAACAAAGGAGCCATTGCGCTTGACCCCTTTC 1083
|| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 937 ATCCCTACTCCATCATACACTGAACCTGCAACAAAGGAGCCATTGCCCTTGACCCCTTTC 996
Query 1084 GGAGAAGCATGCTGGAGAGTGGATCTGAGTGGTATACACGAACTACTCGAGAAACTCGGG 1143
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 997 GGAGAAGCATGCTGGAGAGTGGATCTAAGTGGTATGCACGAACTACTCGAGAAACTCGGG 1056
Query 1144 TATGGAGAGGATGATGTGGTGGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTCAA 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TATGGAGAGGATGATGTGGTGGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTCAA 1116
Query 1204 ATGCAAGAGAATATGGATTACAAGAAGCATGGAGATGCCGCATTTCGTGCTAAAGATTTT 1263
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1117 ATGCAAGAGAATATGGATTACAAGAAGCACGGAGATGCCGCATTTCGTGCTAAAGATTTT 1176
Query 1264 GAAACAGCAATCGAATTTTACACAGAGTTCATGAGTGGAGCACCAGTGGTATCACCAACA 1323
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 GAAACCGCAATCGAATTCTACACAGAGTTCATGAGTGGAGCACCAGTGGTATCACCAACA 1236
Query 1324 GTATTAGCCAGACGGTGTCTATGTTACCTAATGAGCT-ATATGTTCCGCGAGGCTCTAAG 1382
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1237 GTATTAGCCAGACGGTGTCTATGTTACCTAATGAG-TGATATGTTCCGCGAGGCTCTAAG 1295
Query 1383 TGATGCGATGCAAGCTCAGGTCGCATCGCCAGAGTTTTCAATCGCTCTCTACTTACAATC 1442
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1296 TGATGCGATGCAAACTCAGGTCGCATCGCCAGAGTTTTCGATCGCTCTCTACTTACAAGC 1355
Query 1443 GGCTTGTCTTTTAAAGCTTGGAATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGGCTC 1502
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1356 AGCTTGTCTTTTAAAGCTTGGGATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGGCTC 1415
Query 1503 TTCTCTCGAAGCTTTTTAG 1521
|||||||||||||||||||
Sbjct 1416 TTCTCTCGAAGCTTTTTAG 1434
> AT5G01060.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr5:22740-24847 FORWARD LENGTH=1500
Length=1500
Score = 1146 bits (620), Expect = 0.0
Identities = 1153/1402 (82%), Gaps = 69/1402 (5%)
Strand=Plus/Plus
Query 159 GATTTTCCGGGAATTCAGCTTGGAACAGTTGAGAGTCGCAACTGACGGATTCTCCGCCGG 218
||||||||| || ||||| || |||||| ||||| |||| || ||||| |||||||||||
Sbjct 129 GATTTTCCGTGAGTTCAGTTTAGAACAGCTGAGAATCGCCACCGACGGTTTCTCCGCCGG 188
Query 219 CAACATCGTGTCGGAGCACAACGAGAGGGTTCCTAACATCGTCTACAAAGGGAAGCTCAA 278
|||||||| |||||||||||||| ||| || ||||||||||||||||| || |||
Sbjct 189 AAACATCGTATCGGAGCACAACGATTCGGTACCAAACATCGTCTACAAAGGAAAACTCGG 248
Query 279 AGACGGAAGAAAG-ATCGCCGTCAAACGGTTTCAAAGGCTTTCATGGCCTGATTCTTTCG 337
|| || | | ||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 249 CGATGGTCG-TCGCATCGCCGTCAAACGGTTTCAAAGACTTTCTTGGCCTGATCCTTTCG 307
Query 338 AATTCACCGAA-GAAGCACAAGCTGTTGGGAG-GTGTAGGAGTGAGCATATGGCCAATTT 395
|||||| | || |||||||||||||||||||| || |||||||| |||||||| |||||
Sbjct 308 AATTCATC-AATGAAGCACAAGCTGTTGGGAGATTG-AGGAGTGAACATATGGCGAATTT 365
Query 396 GATCGGTTGTTGCTCAGAAGGTC-ACGAGAGGTTGCTCGTTGCTGAGTACATGCCTAATG 454
|||||||||||| | | | | | ||||||| || || ||||||||||| ||||||||||
Sbjct 366 GATCGGTTGTTGTTGTG-ATGACAACGAGAGATTACTTGTTGCTGAGTATATGCCTAATG 424
Query 455 GAACACTT-GCTAAGCATCTCTTTCACTGGGAGAAAAGACCAATGAAATGGGAAATGAGA 513
||||| || || || ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 425 GAACA-TTAGCAAAACATCTTTTTCACTGGGAGAAAAGACCCATGAAATGGGAAATGAGG 483
Query 514 TT-AAGGGTTGCGT-TACATACTGCAACAGCCTTGGAGTACTGTAATGATATGGGAATAG 571
|| || ||||| | | |||||||||| ||| |||||||| |||||||||| ||||| |
Sbjct 484 TTGAA-AGTTGC-TCTGCATACTGCAAGAGCTTTGGAGTATTGTAATGATAAAGGAATTG 541
Query 572 ATTTGTATCACGATCTTAACACC-TACA-GAATATTGTTTGATAAGGTTGGGAATCCTAG 629
|||| || || |||||||| || |||| || || ||||||||||| |||| |||||
Sbjct 542 ATTTATACCATGATCTTAA-TCCTTACAGGATTA-TGTTTGATAAGACAGGGATTCCTAA 599
Query 630 GCTGTCTTG-TTTCGGTCTCATGAAGTGTAGCCGA-G-AGGGAAAGAGCTATAGTACCAA 686
||| ||||| ||| |||||||||||| ||||| | | |||| |||| ||||| |||||
Sbjct 600 GCTTTCTTGCTTT-GGTCTCATGAAGAATAGCC-ATGAAGGG-AAGATTTATAGCACCAA 656
Query 687 CTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGTACTGTGATACCGGAGAGTGTCAC 746
||| || ||||||||||| || ||||| || || |||||||||||| ||||||| |||||
Sbjct 657 CTTAGCTTTTGCTCCTCCCGAGTATTTGCGCCTTGGTACTGTGATAGCGGAGAGCGTCAC 716
Query 747 ATTTAGCTTCGGGACCTTGTTACTGGATCTTATGAGCGGCAGACATATTCCACCTAACCA 806
||||||||| || ||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 717 ATTTAGCTTTGGAACCTTGTTATTGGATCTTATGAGCGGCAGACATATTCCTCCAAACCA 776
Query 807 TGCACTTGATCTATTCCGTGGTAAAAACTATTTGGTGCTAATGGATTCAGCTCTGGATGG 866
|||||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 777 TGCACTTGATTTGTTCCGTGGCAAAAACTATTTGGTGCTAATGGATTCAGCTCTTGATGG 836
Query 867 TCAATTCTCTGATGAGGATAGAACAGAACTAATCCATC-TAGCTTCCCGCTGTTTCCGGC 925
||| ||||||||||| || || ||||||||||| || | ||||||| || |||||| |
Sbjct 837 TCAGTTCTCTGATGAAGACAGGACAGAACTAATACA-CGTAGCTTCTCGATGTTTCAAGA 895
Query 926 CTAAACCAGACGAGAGACCAAGTATAAAGTTTCTTATGTCTG-CTCTTTCAAGACTTGAG 984
|| ||||||| ||||| ||||||||||||||||||| | | | ||||||| |||||| ||
Sbjct 896 CTGAACCAGAAGAGAGGCCAAGTATAAAGTTTCTTAAGGC-GACTCTTTCTAGACTTCAG 954
Query 985 AAACGAGCTGAGTTATGGCCC-A--AC-GTCAACGAAGAAA-ACAT-TCCTAC-TCCA-- 1035
||||| || |||| || ||| | | ||||| |||| | | |||| | || |
Sbjct 955 AAACGGGCCAAGTTGTG-CCCTATTAATGTCAA--AAGACCTATGTCTCCTCCATCAAAA 1011
Query 1036 --TCAGAC--A-----CTAAACCTGCAACAAAGGAGCCATTGC-GCTTGACCCCTTTCGG 1085
|| | | | |||||||||||||| | || ||||| | ||||| ||||||||
Sbjct 1012 AATCTGCCTGAAAAGACTAAACCTGCAACA--G-AGTCATTGAAG-TTGACTCCTTTCGG 1067
Query 1086 AGAAGCATGCTGGAGAGTGGATCTGAGTGGTATACACGAACTACTCGAGAAACTCGGGTA 1145
||| ||||| | |||| |||||| ||| ||||||| |||||||| |||||||| |||||
Sbjct 1068 AGATGCATGTTCTAGAGCGGATCTAAGTAGTATACATGAACTACTAGAGAAACTAGGGTA 1127
Query 1146 TGGAGAGGATGATGTGGT-GGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTC-AA 1203
|| ||| ||| ||| ||| ||| || ||||| ||||||||||||||||| || | ||
Sbjct 1128 TGAAGAAGATAATGGGGTTGGTAAC----GAGTTTTCATTCCAAATGTGGACCGG-CGAA 1182
Query 1204 ATGCAAGAGAATATGGATTACAAGAAGCATGGAGATGCCGCATTTCGTGCTAAAGATTTT 1263
||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 1183 ATGCAAGAGAATATGGACTACAAGAAGCATGGAGATGCCGCGTTTCTTGCGAAAGATTTT 1242
Query 1264 GAAACAGCAATCGAATTTTACACAGAGTTCATGAGTGGAGCACC-AGTGGTATCACCAAC 1322
|| || || || ||||| |||||||||||||||| |||||| || | ||||||||||||
Sbjct 1243 GATACTGCCATTGAATTCTACACAGAGTTCATGACTGGAGCTCCTAC-GGTATCACCAAC 1301
Query 1323 AGTATTAGCCAGACGGTGTCTATGTTACCTAATGAGCT-ATATGTTCCGCGAGGCTCTAA 1381
|||||| || ||| ||||||| ||||||||||||| || | |||||| ||||||||||||
Sbjct 1302 AGTATTGGCAAGAAGGTGTCTTTGTTACCTAATGA-CTGAAATGTTCAGCGAGGCTCTAA 1360
Query 1382 GTGATGCGATGCAAGCTCAGGTCGCATCGCCAGAGTTTTCAAT-CGCTCTCTACTTACAA 1440
| |||||||||||||| || || || || || || | |||| | |||| |||||||||
Sbjct 1361 GCGATGCGATGCAAGCGCAAGTAGCTTCACCGGAATGGCCAATTC-CTCTTTACTTACAA 1419
Query 1441 TCGGCTTGTCTTTTAAAGCTTG-GAATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGG 1499
|||||||||| || ||||| | || |||| ||||||||||||||||| |||||||||||
Sbjct 1420 GCGGCTTGTCTCTTCAAGCTAGAGA-TGGAAGCTGAAGCTAAAGAAGCACTTAGACATGG 1478
Query 1500 CTCTTCTCTCGAAGCTTTTTAG 1521
||| |||| || |||| ||||
Sbjct 1479 TTCTGCTCTTGAGGCTTATTAG 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5