BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317751
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09470.1 | Symbols: | Major facilitator superfamily protein... 1995 0.0
> AT3G09470.1 | Symbols: | Major facilitator superfamily protein
| chr3:2910373-2914513 REVERSE LENGTH=1793
Length=1793
Score = 1995 bits (1080), Expect = 0.0
Identities = 1189/1243 (96%), Gaps = 2/1243 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCTCGAAACGACGAGGAGGCGCCGTTGGTCTCAGCCTCTGGTGAGGATCGGAAG 60
||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 104 ATGGAATCTCGAAACGACGAGGAGGCGCCGTTGATCTCTGCCTCTGGTGAGGATCGGAAA 163
Query 61 GTCAGAGCTGGAAAGAGCTACACAAGAGATGTTCATATCCTCAGCATCTCCTTTCT-CTT 119
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 164 GTCAGAGCTGGAAAGTGCTACACAAGGGATGTTCATATCCTCAGCATCTCCTTTCTGC-T 222
Query 120 AATCTTCCTCGCCTATGGTGCTGCTCAGAACCTTGAAACTACCGTTAATAAGGATTTGGG 179
|||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 223 AATCTTCCTCGCTTACGGTGCTGCTCAGAACCTCGAAACTACCGTAAATAAGGATTTGGG 282
Query 180 AACAATATCTCTAGGGATATTATATGTGTCCTTCATGTTTTGCTCCATGGTTGCATCTTT 239
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 283 AACAATCTCTCTGGGGATATTGTATGTGTCCTTCATGTTTTGCTCCATGGTTGCATCTTT 342
Query 240 GGTTGTCCGGTTAATGGGATCAAAGAATGCTCTGGTTTTAGGAACTACTGGCTATTGGCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 343 GGTTGTCCGGTTAATGGGATCAAAGAATGCTCTGGTTTTAGGAACTACTGGGTATTGGCT 402
Query 300 CTTTGTCGCTGCCAATCTGAAGCCATCATGGTTTACTATGGTACCGGCCTCTTTATACCT 359
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 403 CTTTGTTGCTGCTAATCTGAAGCCATCATGGTTTACTATGGTACCAGCCTCTTTATACCT 462
Query 360 TGGATTTGCAGCTTCAATAATATGGGTTGGCCAGGGAACGTACCTTACTTCAATTGCGAG 419
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 463 TGGATTTGCAGCTTCAATAATATGGGTTGGTCAGGGAACATACCTTACATCAATTGCGAG 522
Query 420 AAGCCATGCTAAAGATCATGGCCTGCATGAAGGTTCGGTAATCGGTGTCTTCAATGGGGA 479
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 523 AAGCCATGCTACAGATCATGGCCTGCATGAAGGTTCGGTAATAGGTGTCTTCAATGGGGA 582
Query 480 ATTTTGGGCTATGTTTGCCTGCCACCAGCTGTTTGGGAATCTCATCACACTTGCATTGCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 583 ATTTTGGGCTATGTTTGCCTGCCACCAGCTGTTTGGGAATCTCATCACACTTGCATTACT 642
Query 540 GAAAGATGGAAAGGAAGGAAGCACCAGTGGCACTACCTTATTGATGTTGGTGTTTCTCTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GAAAGATGGAAAGGAAGGAAGCACCAGTGGCACTACCTTATTGATGTTGGTGTTTCTCTT 702
Query 600 CAGTATGACATTAGGAACAATACTAATGTTCTTCATTCGGGAAATTGACGGAGAAGATGG 659
|||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 703 CAGTATGACATTAGGAACAATACTTATGTTCTTCATTCGGAAAATTGATGGAGAAGATGG 762
Query 660 AAAAGGACCTGTGGGTTCTCCTGTGGGCTTACTTGATTCCTTGATTTCTCTTCCAAGGAT 719
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 763 AAAAGGACCTGTGGGTTCTCCTGTGGGCTTAGTTGATTCCTTGGCATCTCTTCCAAGGAT 822
Query 720 GATAATCACTCCTTTGCTCAACATACGGATGCTACTGATTGTCCCACTCCTTGCATACTC 779
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 823 GATAATTACTCCTTTGCTCGACATACGGATGCTACTGATTGTCCCACTCCTTGCATATTC 882
Query 780 AGGATTGCAACAAGCATTTGTTTGGGCTGAGTTTACAAAGGAAATTGTTACACCGGCGAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 883 AGGATTGCAACAAGCATTTGTTTGGGCTGAGTTTACAAAGGAAATTGTTACGCCGGCGAT 942
Query 840 TGGTGTCTCAGGTGTCGGTGGGGCGATGGCAGTCTACGGAGCTCTTGATGCAGTTTGTTC 899
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TGGTGTCTCAGGTGTTGGTGGGGCGATGGCAGTCTACGGAGCTCTTGATGCAGTTTGTTC 1002
Query 900 AATGACGGCTGGAAGGTTTACCTCTGGTTTGTCATCAATCACCTTCATAGTTTCCGGTGG 959
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1003 AATGACTGCTGGAAGGTTTACCTCTGGTTTGTCATCGATCACCTTCATAGTTTCTGGTGG 1062
Query 960 AGCTGTAGCTCAAGCTTCGGTGTTTCTCTGGCTTCTTCTTGGGTACAGGCAAACGAGCGG 1019
|||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 1063 AGCTGTTGCTCAAGCTTCTGTGTTTCTCTGGCTTCTTCTCGGGTACAGGCAAACTAGCGG 1122
Query 1020 AGTACTTGGCACAGCTTACCCACTCATAATGGCGGCGATATTAGGAATTGGTGACGGGAT 1079
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 1123 AGTACTTGGCACAGCTTACCCACTTATAATGGCGGCCATATTAGGAATTGGTGATGGAAT 1182
Query 1080 ATTAAATACTCAAATCAGTGCTCTTCTCGCATTACTCTTCAAGCATGACACGGAAGGAGC 1139
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1183 ATTAAATACTCAAATCAGTGCTCTTCTCGCATTACTCTTCAAACATGACACGGAAGGAGC 1242
Query 1140 GTTTGCACAGCTAAAAGTATGGCAGAGCGCAGCAATAGCAATAGTGTTCTTCCTAAGCCC 1199
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1243 ATTTGCGCAGCTAAAAGTATGGCAGAGCGCAGCAATAGCGATAGTGTTCTTCCTAAGCCC 1302
Query 1200 GTACATATCGCTGCAAGCAATGCTCATAGTGATGCTTGTTATG 1242
||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1303 GTACATATCACTGCAAGCAATGCTCATAGTGATGCTGGTTATG 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5