BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317759
Length=2628
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09560.2 | Symbols: | Lipin family protein | chr3:2934617-2... 2163 0.0
> AT3G09560.2 | Symbols: | Lipin family protein | chr3:2934617-2939456
REVERSE LENGTH=3465
Length=3465
Score = 2163 bits (1171), Expect = 0.0
Identities = 1282/1336 (96%), Gaps = 6/1336 (0%)
Strand=Plus/Plus
Query 1296 TGATAAGAATAACGA-GA-ATGGTACGACTGTAGTTTCAGTGGGTGCGACTTCTAGTGTC 1353
||||||| ||||||| || | || | |||||||||||||||||||| |||||||||||||
Sbjct 1797 TGATAAGGATAACGAGGACA-GG-AAGACTGTAGTTTCAGTGGGTGTGACTTCTAGTGTC 1854
Query 1354 GACTTAGGAAAACCCGATACAGTTCAGAGATATGAGCTATCACTTTGCAAGGATGAGCTT 1413
||| |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1855 GACGAAGGAGAACCCGATACAGATCAGAGATATGAGTTATCACTTTGCAAGGATGAGCTT 1914
Query 1414 CGTCAGGGTATGGGACTTCGCGCAGCTGCTGAAGTCTTTGATGCGCAT-CGAATCTCCAT 1472
|||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||
Sbjct 1915 CGTCAGGGTATGGGACTTAGCGCAGCTGCTGAAGTCTTTGATGCACATATG-ATCTCCAA 1973
Query 1473 GGAAGAATATATAAATTCGGCAACATCAATTCTTGAAAGTGAAAATCTGGTTGTTAGGAT 1532
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1974 GGAAGAATATATAAATTCGGCCACATCAATTCTTGAAAGTGAAAATCTGGTTGTTAGGAT 2033
Query 1533 TAGAGAAACGTATATGCCATGGACGAAAGCTGCTCGGATTGTGCTTGGGAAAGCTGTGTT 1592
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2034 TAGAGAAACGTATATGCCATGGACGAAAGCTGCTCGAATTGTGCTTGGGAAAGCTGTGTT 2093
Query 1593 TGATCTAGACTTAGATATCCAGCCAGATGATGTGATTTCTGTGGAGGAAAATGAATCGCC 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 TGATCTAGACTTAGATATCCAGCCAGATGATGTGATTTCTGTGGAGGAAAATGAATCGCC 2153
Query 1653 TAAACCCAAGGATGATGAAACTACAATAACTCCTTCTTCATCTGGAAGAAGATGGACACT 1712
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 2154 TAAGCCCAAGGATGATGAAACTACAATAACTCCTTCTTCATCTGGAACAAGATGGAGACT 2213
Query 1713 CTGGCCGATTCCTTTTCGAAGGGTTAAAACAGTTGAGCATACAGGAAGTAACTCCTCAAG 1772
|||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2214 CTGGCCGATTCCTTTTAGAAGGGTTAAAACTGTTGAGCATACGGGAAGTAACTCCTCAAG 2273
Query 1773 CGAAGAAGATCTGTTTGTTGATTCTGAACCTGGCTTACAGAACTCACCGGAAACACAATC 1832
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2274 CGAAGAAGATCTGTTTGTTGATTCCGAACCTGGCTTACAGAACTCACCGGAAACACAATC 2333
Query 1833 AACCACAGAGAGTCGCCATGAGTCTCCGCGTAGACAACTTGTGAGAACTAATGTCCCAAC 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2334 AACCACAGAGAGTCGCCATGAGTCTCCGCGTAGACAACTTGTGAGAACTAATGTCCCTAC 2393
Query 1893 CAATGAACAAATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACTTTTAGTTT 1952
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2394 CAATGAACAGATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACATTTAGTTT 2453
Query 1953 CTCAACAAGAGTTCTTGGAACACAGCAGGTCGATGCACATATTTACCGGTGGAGATGGGA 2012
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 2454 CTCAACAAGAGTTCTTGGAACACAACAGGTCGATGCTCACATTTACCGGTGGAGATGGGA 2513
Query 2013 CACCAAGATAGTGATCTCAGATGTTGATGGAACTATAACTAAATCTGATGTGTTAGGTCA 2072
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2514 CACCAAGATAGTGATTTCAGATGTTGATGGAACTATAACTAAATCTGATGTGTTAGGTCA 2573
Query 2073 GTTCATGCCCTTCATTGGAAAGGACTGGACACAATCCGGTGTAGCTAAGCTTTTTTCTGC 2132
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2574 GTTCATGCCCTTCATTGGAAAGGACTGGACCCAATCCGGTGTAGCCAAGCTTTTTTCTGC 2633
Query 2133 CATAAAGGAGAATGGATATCAGTTGCTGTTTTTGAGCGCTCGTGCCATCGTTCAGGCATA 2192
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2634 CATAAAGGAGAATGGATATCAGTTACTGTTTTTGAGCGCTCGTGCCATCGTTCAGGCATA 2693
Query 2193 TCTAACGAGAAGTTTCTTAAATAATCTGAAGCAAGACGGAAAAGCTCTGCCAAATGGCCC 2252
|||||| |||| ||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 2694 TCTAACAAGAAATTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTGCCAACCGGTCC 2753
Query 2253 TGTGGTCATTTCTCCAGATGGCCTATTTCCAGCATTGTACCGTGAAGTGATAAGAAGAGC 2312
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2754 TGTGGTCATTTCACCAGATGGCCTATTTCCAGCATTGTACCGTGAAGTGATAAGAAGAGC 2813
Query 2313 ACCTCATGAATTCAAGATCGCATGTTTGGAGGATATCAGGAAACTTTTCCCAACAGATTA 2372
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2814 ACCTCATGAGTTCAAGATCGCATGTTTGGAGGATATCAGGAAACTCTTCCCAACGGATTA 2873
Query 2373 CAACCCGTTCTACGCTGGATTTGGAAACAGAGACACAGATGAGCTGAGTTACAGAAAACT 2432
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2874 CAACCCGTTCTATGCCGGATTTGGAAATAGAGACACAGATGAGCTGAGTTACAGAAAACT 2933
Query 2433 CGGAATCCCAAAGGGAAAGATATTCATAATCAACCCAAAGGGAGAAGTGGCAACAGGACA 2492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2934 CGGAATCCCAAAGGGAAAGATATTCATAATCAACCCAAAGGGAGAAGTGGCAACAGGACA 2993
Query 2493 TCGCATAGATGTCAAGAAGTCTTACACTTCACTTCATACTCTTGTCAACGACATGTTTCC 2552
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2994 TCGCATAGATGTCAAGAAATCTTACACTTCACTTCATACTCTTGTCAACGACATGTTTCC 3053
Query 2553 TCCAACTTCACTTGTTGAGCAGGAAGATTATAACCCATGGAACTTCTGGAAACTACCAAT 2612
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 3054 TCCAACTTCACTTGTTGAGCAGGAAGATTATAACCCATGGAATTTCTGGAAACTGCCAAT 3113
Query 2613 AGAAGAGGTTGATTGA 2628
|||||||||||| |||
Sbjct 3114 AGAAGAGGTTGAATGA 3129
Score = 1694 bits (917), Expect = 0.0
Identities = 1126/1221 (92%), Gaps = 37/1221 (3%)
Strand=Plus/Plus
Query 9 TTTGGTTGCAAGAGTTGGGAATTTGATTTCTCAAGGCGTTTACTCTGTCGCTACACCATT 68
|||||||| ||||||||||| ||||||||||||||| ||||||||||| || ||||||||
Sbjct 420 TTTGGTTGGAAGAGTTGGGAGTTTGATTTCTCAAGGGGTTTACTCTGTAGCGACACCATT 479
Query 69 TCATCCATTTGGTGGTGCTATTGATGTCATCGTTGTTCAACAACAAGATGGTTCTTTCCG 128
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCATCCCTTTGGTGGTGCTATTGATGTCATCGTTGTTCAACAACAAGATGGTTCTTTCCG 539
Query 129 TAGCACGCCTTGGTATGTTAGGTTTGGTAAGTTCCAAGGTGTTCTCAAAGGCGCTGAGAA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TAGCACGCCTTGGTATGTTAGGTTTGGTAAGTTCCAAGGTGTTCTCAAAGGCGCTGAGAA 599
Query 189 GTTTGTCAAGATATCTGTAAATGGTACCGAAGCCGATTTCCACATGTATCTTGATAATTC 248
|||||||| ||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 600 GTTTGTCAGGATTTCTGTTAATGGAACCGAAGCTGATTTTCACATGTATCTTGATAATTC 659
Query 249 TGGTGAAGCATACTTCATCAGGGAAGTTGATCCTGCTA-ATAATGACACCAACAGTTTGA 307
|||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct 660 TGGTGAAGCATATTTCATCAGGGAAGTTGATCCTGC-AGCTAATGACACCAACAATTTGA 718
Query 308 TTTCCGGGTCTGAGAATAACAATGGTAAT--G--T---GG-G----TTATCGACTTGAGC 355
||||||||||||||||||||||||||||| | | || | ||||||||||||||
Sbjct 719 TTTCCGGGTCTGAGAATAACAATGGTAATCAGAATAACGGTGTTACTTATCGACTTGAGC 778
Query 356 ACAGTTTATCGGACTCTGGTGCTGGAGAATTACGAGAGGGTTTCGAATCTTTGAATCGGC 415
|||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||
Sbjct 779 ACAGTTTATCGGACTCTGGTACTGGAGAATTACGAGAGGGTTTCGACCCTTTGAGTCGGC 838
Query 416 TTGAGAGGACAGAGTCTGATTGTAATAGGAGGTTTTATGATTTTCAGGATGATCCTCCTT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGAGAGGACAGAGTCTGATTGTAATAGGAGGTTTTATGATTTTCAGGATGATCCTCCTT 898
Query 476 CTCCAACCTCAGAATATGGAAGTGCTCGATTTGACAATCTAAATGTGGAAAGTTATGGGG 535
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGCCAACCTCAGAATATGGAAGTGCTCGATTTGACAATCTAAATGTGGAAAGTTATGGGG 958
Query 536 ATTCTCAAGGCTCAGATTCTGAAGTGGTTTTGGTCAGTATTGATGGACATATACTAACAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATTCTCAAGGCTCAGATTCTGAAGTGGTTTTGGTCAGTATTGATGGACATATACTAACAG 1018
Query 596 CTCCTGTGTCAGCGGCAGAGCAGGAGGCTGAGAATTTACGGTTAAATACTCCTCAGTTTC 655
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CCCCTGTGTCAGTTGCTGAGCAGGAGGCTGAGAATTTACGGTTAAATACTCCTCAGTTTC 1078
Query 656 ATTTGGCCCCTGGTGATGGGACTGAGTTTTGTGAAGGTAATACTGAGTTTGCTTCGTCAG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1079 ATTTGGCCCCTGGTGATGGGACTGAGTTTTGTGAAGGTAATACTGAGTTTGCTTCATCAG 1138
Query 716 AGACTCCGTGGGATACTGAATATATCGCCAAAGTGGAGGAGTCATCTGATACTGCTAATA 775
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1139 AGACTCCGTGGGATACTGAATATATCGACAAAGTGGAGGAGTCATCTGATACTGCTAATA 1198
Query 776 TTGTATCTGAAAAATTAGATACCACGAATGATGAGCGTATTGATTTAGATTCCCAT---- 831
||| |||||| ||| ||||| ||| ||||||||||||| |||||| |||||||||
Sbjct 1199 TTGCATCTGATAAAGTAGATGCCATTAATGATGAGCGTAATGATTTGGATTCCCATTCTC 1258
Query 832 G--ATAATGCCGAAAAATATTCTCATGATGCTGAAAGAGATCTTCTTGGGAGCTGTCTGG 889
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GTGATAATGCCGAAAAAGATTCTCATGATGCTGAAAGAGATCTTCTTGGGAGCTGTCTGG 1318
Query 890 AGCAGTCAGAG---AC------TGGTGAGAATGCCAAGTCCGGGGAACCAGGTTCTACTT 940
||||||||||| || | ||||||||| ||||| | |||||||||| ||||||
Sbjct 1319 AGCAGTCAGAGCTGACCAAAACTAGTGAGAATGTGAAGTCTGAGGAACCAGGTCCTACTT 1378
Query 941 TTGAGGATCAGAATCTAAAAGAAGGTGAGTTTCCACTTAGCACCATCACGGAAAATGATA 1000
||||||||| |||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct 1379 TTGAGGATCGGAATCTAAAAGAAGGTGAGTTTCCACTTCGCACCATTATGGAAAATGATA 1438
Query 1001 GAAGTGAAGATGAAGTGACTATTGAAACAGTAGATACTCTTGTTGATAGTTTTGAACCTT 1060
|||||||||||||||| ||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1439 GAAGTGAAGATGAAGTTACTATTGAATCAATAGATACTCTTGTTGATAGTTTTGAATCTT 1498
Query 1061 CTACAACCCCAGTAACAGCAGAAGAAATGAAAACAACTGA-GGAATCCAGAATATCCGTT 1119
||||||||| | ||||| ||||||| |||||||||| || ||| |||||||||||||||
Sbjct 1499 CTACAACCCAAATAACAATAGAAGAAGTGAAAACAACCGAAGGA-TCCAGAATATCCGTT 1557
Query 1120 GATTCTATTGCTGAATCAGAATGTAAGGATGAACAGCCAAGAACATCTGCAGAAACTGCC 1179
||||||| |||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1558 GATTCTAATGCTGATTCAGAATGTAAGGATGAACA---AA---CATCTGCAGAAACTGCC 1611
Query 1180 ATCTTGATTAACAACCAGGAA 1200
|||||| ||||||||||||||
Sbjct 1612 ATCTTGTTTAACAACCAGGAA 1632
Score = 270 bits (146), Expect = 4e-71
Identities = 169/180 (94%), Gaps = 1/180 (1%)
Strand=Plus/Plus
Query 1092 AACAACTGAGGAATCCAGAATATCCGTTGATTCTATTGCTGAATCAGAATGTAAGGATGA 1151
|||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||||
Sbjct 1621 AACAAC-CAGGAATCCAGTATATCCGTTGATTCTAATGCTGATTCAGAATGTAAGGATGA 1679
Query 1152 ACAGCCAAGAACATCTGCAGAAACTGCCATCTTGATTAACAACCAGGAAGGCGGGATTAT 1211
||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1680 ACAGCCACGAATATCTGCAGAAACTGCCATCTTGATTAACAACCAGGAAGGTGGGATTAT 1739
Query 1212 AGAATTGGAAGATCAGGATTCTGAGAGAGTCTCTATAGATTCAACGAGGGAAGAAGTTGA 1271
||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1740 AGAATCGGAAGACCAGGATTCTGAGAGAGTCTCTATAGATTCAACGAGGGAGGAAGTTGA 1799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130484218743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5