BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317774
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09730.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1181 0.0
> AT3G09730.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9
growth stages. | chr3:2983934-2986455 FORWARD LENGTH=1355
Length=1355
Score = 1181 bits (639), Expect = 0.0
Identities = 712/747 (95%), Gaps = 6/747 (1%)
Strand=Plus/Plus
Query 419 ATCATTCCTCTTTCAGCTCAGCACTTGGTGTCTGCATGATGTATATGATGTCAGCAGAGA 478
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 515 ATCATTCCTCTTTCAGCTCAGCACTGGGTGTCTGCATGATGTATATGATGTCAGCAGAGA 574
Query 479 AAAGTGAAATCAGTAAGCTGCATGCAGCAACAGAAGAAACTGCCAAAGTCATCCAAGAGC 538
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 575 AAGGTGAAATCAGTAAGCTGCATGCAGCAACAGAAGAAACTACCAAAGTCATCCAAGAGC 634
Query 539 TAAAAGATGAACTTTCTAGGATAAAATCTTTACAGAGTTTCAAGTTT-GCAGC--AACAG 595
||||||||||||| |||||||| |||||||||||| ||||||||||| | || |||
Sbjct 635 TAAAAGATGAACTCTCTAGGATTAAATCTTTACAGGGTTTCAAGTTTCGTGGCTGTGCAG 694
Query 596 CAAGTTCTGAGAAATCTGGCCAGATAAATCTCAGTAGATCAGAGATGGCGAGTAGAGAAT 655
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| ||
Sbjct 695 CAAGTTCTGAGAAATCTGGCCAGATAGATCTCAATAGATCAGAGATGGTGAGTAGAGTAT 754
Query 656 GTCTCGATATCATCAAGGCAGGCAATGATGGAGAATATGCTAGCAGCGTCCTAACTGAGG 715
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 CTCTCG--AT-ATCAAGTCAGGCAATGATGGAGAATATGCTAGCAGCGTCCTAACTGAGG 811
Query 716 AGCCAGAACAAGAGGCAGTAGAAATGGAACAATTAGAGATGGAACTTGAATCTGAGCTGC 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 AGCCAGAACAAGAGGCAGTAGAAATGGAACAATTAGAGATGGAACTTGAATCTGAGCTGC 871
Query 776 AGAAATTGAACTTGGCTGAGACAAGTGATGCTATGGAGGAATGCAAGGATTTGGTTAATG 835
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 872 AGAAATTGAACTTGGCTGAGACAAGTGATGTTATGGAGGAATGTAAGGATTTGGTTAATG 931
Query 836 GAGCTGAGTCATACCAATGTGGTGGAATATCGGCATCAGAGCTGGACAAGAAACTAAGCC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 GAGCTGAGTCATACCAATGTGGTGGAATATCGGCATCAGAGCTGGACAAGAAACTAAGCC 991
Query 896 ACCTTCTCATTGAACAACAAGAGGGACAGATCAATGAACTTGAAGCTGAACTGCAAACTA 955
|||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 992 ACCTTCTCATCGAACAACAAGAAGGACAGATCAATGAGCTTGAAGCTGAACTACAAACTA 1051
Query 956 CTCAGTCCAAACTCCAAGAGAAGGAAGCTGAGCTTCAAGCACTTAAGGTCTGCGTTAGAC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 CTCAGTCCAAACTCCAAGAGAAGGAAGCTGAGCTTCAAGCACTTAAGGTCTGCGTTAGAC 1111
Query 1016 GCCTAACAGAGTTTCCTCTCTTGGACCGTTCAGATGATGAGCATGAAGAGGACCTGAACC 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1112 GCCTAACAGAGTTTCCTCTCTTGGACCGTTCAGATGATGAGCATGAAGAGGACCTGAATC 1171
Query 1076 AGGATCTCTCAGTCTCATGGAGCCAACAAAACAAAATTGATCATGAGGTAAGAAAGCCGA 1135
|||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||| ||
Sbjct 1172 AGGATCTCTCAGTCTCATGGAGCCAACATAACAAAACTGATCACGAGGCAAGAAAGCAGA 1231
Query 1136 TCGTTGGGATGAAAAGGCCTATGGAGT 1162
|| ||||||||||||||||||||||||
Sbjct 1232 TCATTGGGATGAAAAGGCCTATGGAGT 1258
Score = 516 bits (279), Expect = 2e-145
Identities = 324/345 (94%), Gaps = 5/345 (1%)
Strand=Plus/Plus
Query 1 ATGTGGCAAGTTCTTCTAGGAGCAGCCATTGCTGGATCCACTGGTTTAGTAGCCAAACGG 60
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 85 ATGTGGCAAGTTATTCTAGGAGCAGCCATTGCTGGATCCACTGGTTTTGTAGCCAAACGC 144
Query 61 TTCTTCAACCCTTTCTCTCGAGATTCTCCTACTCTCGAGGATTACACTGAAGAGCAGGAA 120
|| ||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 145 TTATTCAACCCTTTCTCTCGAGATTCTCCTACTCCCGAGAATTACGCTGAAGAGCAGGAA 204
Query 121 CCCA-TCGCTCCTCCTGTAAGTATTGGATTTCTCGATTCTCCTTTCGACAAAACCAATGG 179
||| || |||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 205 -CCAGTCACTCCTCCTGTGAGCATTGGATTTCTCGATTCTCCTTGCGACAAAACCAATGG 263
Query 180 CGTTTTCCGGTTTTCTAGTTCCGGGTCTACCGTTAACTCTGGATCCGGATCCGGGTCTTC 239
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 264 CGTTTTCCGATTTTCTAGTTCCGGGTCTACCGTTAACTCAGGATCAGGATCCGGGTCTTC 323
Query 240 TCCTGGGTTTAGGAAGAGTTCAGGGGTGAAATGTAGAGTTAGGGTTCGTGGATTGATGAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TCCTGGGTTTAGGAAGAGTTCAGGGGTGAAATGTAGAGTTAGGGTTCGTGGATTGATGAA 383
Query 300 GAAGAAGAA-AAA--GATTAGTGAGGGATGTGAGATCGAGAAGCG 341
||||||||| ||| || ||||| |||||||||||||||||||||
Sbjct 384 GAAGAAGAAGAAAAAGAATAGTGGGGGATGTGAGATCGAGAAGCG 428
Score = 104 bits (56), Expect = 2e-21
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 336 GAAGCGTGAGGTTTGCTCGAAAAAGACGAAAACTTTGGGTGCTGCTTCTGCTTCAAAAC 394
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GAAGAGTGAGGTTTGCTCGAAAAAGACGAAAACTTTGGGTGCTGCTTCTGCTTCAAAAC 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5