BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg317774 Length=1179 Score E Sequences producing significant alignments: (Bits) Value AT3G09730.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1181 0.0 > AT3G09730.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages. | chr3:2983934-2986455 FORWARD LENGTH=1355 Length=1355 Score = 1181 bits (639), Expect = 0.0 Identities = 712/747 (95%), Gaps = 6/747 (1%) Strand=Plus/Plus Query 419 ATCATTCCTCTTTCAGCTCAGCACTTGGTGTCTGCATGATGTATATGATGTCAGCAGAGA 478 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 515 ATCATTCCTCTTTCAGCTCAGCACTGGGTGTCTGCATGATGTATATGATGTCAGCAGAGA 574 Query 479 AAAGTGAAATCAGTAAGCTGCATGCAGCAACAGAAGAAACTGCCAAAGTCATCCAAGAGC 538 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 575 AAGGTGAAATCAGTAAGCTGCATGCAGCAACAGAAGAAACTACCAAAGTCATCCAAGAGC 634 Query 539 TAAAAGATGAACTTTCTAGGATAAAATCTTTACAGAGTTTCAAGTTT-GCAGC--AACAG 595 ||||||||||||| |||||||| |||||||||||| ||||||||||| | || ||| Sbjct 635 TAAAAGATGAACTCTCTAGGATTAAATCTTTACAGGGTTTCAAGTTTCGTGGCTGTGCAG 694 Query 596 CAAGTTCTGAGAAATCTGGCCAGATAAATCTCAGTAGATCAGAGATGGCGAGTAGAGAAT 655 |||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| || Sbjct 695 CAAGTTCTGAGAAATCTGGCCAGATAGATCTCAATAGATCAGAGATGGTGAGTAGAGTAT 754 Query 656 GTCTCGATATCATCAAGGCAGGCAATGATGGAGAATATGCTAGCAGCGTCCTAACTGAGG 715 ||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 755 CTCTCG--AT-ATCAAGTCAGGCAATGATGGAGAATATGCTAGCAGCGTCCTAACTGAGG 811 Query 716 AGCCAGAACAAGAGGCAGTAGAAATGGAACAATTAGAGATGGAACTTGAATCTGAGCTGC 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 812 AGCCAGAACAAGAGGCAGTAGAAATGGAACAATTAGAGATGGAACTTGAATCTGAGCTGC 871 Query 776 AGAAATTGAACTTGGCTGAGACAAGTGATGCTATGGAGGAATGCAAGGATTTGGTTAATG 835 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 872 AGAAATTGAACTTGGCTGAGACAAGTGATGTTATGGAGGAATGTAAGGATTTGGTTAATG 931 Query 836 GAGCTGAGTCATACCAATGTGGTGGAATATCGGCATCAGAGCTGGACAAGAAACTAAGCC 895 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 932 GAGCTGAGTCATACCAATGTGGTGGAATATCGGCATCAGAGCTGGACAAGAAACTAAGCC 991 Query 896 ACCTTCTCATTGAACAACAAGAGGGACAGATCAATGAACTTGAAGCTGAACTGCAAACTA 955 |||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||| Sbjct 992 ACCTTCTCATCGAACAACAAGAAGGACAGATCAATGAGCTTGAAGCTGAACTACAAACTA 1051 Query 956 CTCAGTCCAAACTCCAAGAGAAGGAAGCTGAGCTTCAAGCACTTAAGGTCTGCGTTAGAC 1015 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1052 CTCAGTCCAAACTCCAAGAGAAGGAAGCTGAGCTTCAAGCACTTAAGGTCTGCGTTAGAC 1111 Query 1016 GCCTAACAGAGTTTCCTCTCTTGGACCGTTCAGATGATGAGCATGAAGAGGACCTGAACC 1075 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1112 GCCTAACAGAGTTTCCTCTCTTGGACCGTTCAGATGATGAGCATGAAGAGGACCTGAATC 1171 Query 1076 AGGATCTCTCAGTCTCATGGAGCCAACAAAACAAAATTGATCATGAGGTAAGAAAGCCGA 1135 |||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||| || Sbjct 1172 AGGATCTCTCAGTCTCATGGAGCCAACATAACAAAACTGATCACGAGGCAAGAAAGCAGA 1231 Query 1136 TCGTTGGGATGAAAAGGCCTATGGAGT 1162 || |||||||||||||||||||||||| Sbjct 1232 TCATTGGGATGAAAAGGCCTATGGAGT 1258 Score = 516 bits (279), Expect = 2e-145 Identities = 324/345 (94%), Gaps = 5/345 (1%) Strand=Plus/Plus Query 1 ATGTGGCAAGTTCTTCTAGGAGCAGCCATTGCTGGATCCACTGGTTTAGTAGCCAAACGG 60 |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 85 ATGTGGCAAGTTATTCTAGGAGCAGCCATTGCTGGATCCACTGGTTTTGTAGCCAAACGC 144 Query 61 TTCTTCAACCCTTTCTCTCGAGATTCTCCTACTCTCGAGGATTACACTGAAGAGCAGGAA 120 || ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| Sbjct 145 TTATTCAACCCTTTCTCTCGAGATTCTCCTACTCCCGAGAATTACGCTGAAGAGCAGGAA 204 Query 121 CCCA-TCGCTCCTCCTGTAAGTATTGGATTTCTCGATTCTCCTTTCGACAAAACCAATGG 179 ||| || |||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 205 -CCAGTCACTCCTCCTGTGAGCATTGGATTTCTCGATTCTCCTTGCGACAAAACCAATGG 263 Query 180 CGTTTTCCGGTTTTCTAGTTCCGGGTCTACCGTTAACTCTGGATCCGGATCCGGGTCTTC 239 ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 264 CGTTTTCCGATTTTCTAGTTCCGGGTCTACCGTTAACTCAGGATCAGGATCCGGGTCTTC 323 Query 240 TCCTGGGTTTAGGAAGAGTTCAGGGGTGAAATGTAGAGTTAGGGTTCGTGGATTGATGAA 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 TCCTGGGTTTAGGAAGAGTTCAGGGGTGAAATGTAGAGTTAGGGTTCGTGGATTGATGAA 383 Query 300 GAAGAAGAA-AAA--GATTAGTGAGGGATGTGAGATCGAGAAGCG 341 ||||||||| ||| || ||||| ||||||||||||||||||||| Sbjct 384 GAAGAAGAAGAAAAAGAATAGTGGGGGATGTGAGATCGAGAAGCG 428 Score = 104 bits (56), Expect = 2e-21 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 336 GAAGCGTGAGGTTTGCTCGAAAAAGACGAAAACTTTGGGTGCTGCTTCTGCTTCAAAAC 394 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 456 GAAGAGTGAGGTTTGCTCGAAAAAGACGAAAACTTTGGGTGCTGCTTCTGCTTCAAAAC 514 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57881228385 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5