BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317804
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10030.1 | Symbols: | aspartate/glutamate/uridylate kinase ... 2612 0.0
> AT3G10030.1 | Symbols: | aspartate/glutamate/uridylate kinase
family protein | chr3:3092023-3094945 REVERSE LENGTH=1997
Length=1997
Score = 2612 bits (1414), Expect = 0.0
Identities = 1563/1634 (96%), Gaps = 13/1634 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCGTGTGATGACGATTTCTCTCTACTTGGAGACGATCAGTCAAACCCTAATCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 ATGGCGTCGTGTGATGACGATTTCTCTCTACTTGGAGACGATCAGTCAAACCCTAATCAA 174
Query 61 CATCACCACCACCACCAAGTTCTTCATCACACCCCCTACGCTCCTAGACGATTCAACCCG 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 175 CATCACCACCACCACCAAGTTCTTCATCACACGCCCTACGCTCCTAGACGATTCAACCCG 234
Query 121 AAGCCATCGAATCAGATCCATTTACCACATCACCAGAGGAACGGTGACGAGGACGACGAG 180
|| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||
Sbjct 235 AAACCATCGAATCAGATCCTTTTACCGCATCACCAGAGGAACGGCGACGAGGACGACGAG 294
Query 181 AACGATGTCGTTGTAGAGGCGTCTTCTGCTTTTCACGGTGTTGGTGTTAATCCTTTCTCT 240
||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |
Sbjct 295 AACGATGTCGTTGTAGAAGCGTCTTCTGCTTTCCACGGTCACGGTGTTAATCCTTTCAC- 353
Query 241 GG-TGACGAAAATTCGAATCCGTATGATGATAATAACGCAG--GT-GTC---GACGAAGA 293
|| ||||||||||||||||||||||||||||||||||||| || | | ||||||||
Sbjct 354 GGCGGACGAAAATTCGAATCCGTATGATGATAATAACGCAGCTGTAGACGAAGACGAAGA 413
Query 294 CGAAGATCTCGATGCCAACAGATCCAGAATCGGAGGTGTTCGTGTTGAGAAGAGGCAGAG 353
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 414 CGAAGATCTCGGTGCCAACAGATCTAGAATCGGAGGTGTTCGTGTTGAGAAGAGGCAGAG 473
Query 354 TCAGGAGGAGCTAAGTGACGGAGGAACAACGAATGGTGGTGAGATCACACCTTACGGTAG 413
|||||||||||||||||||||||||||||| ||||| |||||||| || || ||||||||
Sbjct 474 TCAGGAGGAGCTAAGTGACGGAGGAACAACAAATGGCGGTGAGATTACTCCCTACGGTAG 533
Query 414 CTTCAAGAGGCCGAGGACTTCGTCTTCCTCAGCTGGTGAGTATAGGAAGGATAGGGAAGA 473
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 534 CTTCAAGAGACCGAGGACTTCGTCTTCCTCAGCTGGTGAGTATAGGAAGGATAGAGAAGA 593
Query 474 GTGGAGCGATGCGGCGATCGCGTGTTTGTTAGATGCGTATTCGGATAAGTTCACACAGCT 533
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTGGAGTGATGCGGCGATTGCGTGTTTGTTAGATGCGTATTCGGATAAGTTCACACAGCT 653
Query 534 TAATCGAGGGAATCTTCGGGGAAGGGACTGGGAAGAGGTTGCTTCATCGGTGAGTGAGAG 593
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 654 TAATCGAGGGAATCTCCGGGGAAGAGATTGGGAAGAGGTTGCTTCATCGGTGAGTGAGAG 713
Query 594 GTGTGAAAAGCTGAGTAAGAGTGTAGAACAGTGTAAGAACAAGATTGATAATCTCAAGAA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GTGTGAAAAGCTGAGTAAGAGTGTAGAACAGTGTAAGAACAAGATTGATAATCTCAAGAA 773
Query 654 GAGGTATAAGCTTGAAAGGCATAGGATGAGCAGTGGTGGAACATCAGCTAGTCACTGGCC 713
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 774 GAGGTATAAGCTTGAAAGGCATAGAATGAGCAGTGGTGGAACAGCAGCTAGTCACTGGCC 833
Query 714 TTGGTTTAAGAAGATGGAAGATATTGTGGGCAATTCATTGGCCACGAAAGGCGCGTCTGA 773
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 834 TTGGTTTAAGAAGATGGAAGATATTGTGGGCAATTCATTAGCCTTGAAAGGCGCGTCTGA 893
Query 774 TGAAGATAGAAGTGGAAGCTCAATGGGGAATACTGTGAAGCCAGCGAGGAGGTATCCCCT 833
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 894 TGAAGATAGAAGCGGAAGCTCAATGGGGAATACTGTGAAGCCAGCTAGAAGGTATCCTCT 953
Query 834 GGTAACATATAACCCTGGAGTTCAGATTAATAACGTCAAATCCAAGGCTACATCAAACCC 893
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 954 GGTAACATATAACCCAGGAGTTCAGATTAATAACGTCAAATCAAAGGCTACATCAAACCC 1013
Query 894 AAGATGGCGAAGAGTGGTTTTGAAAATCAGTGGTGCAGCTCTTGCCTGCACGGGTCCTAA 953
|||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 1014 TAGATGGCGAAGAGTGGTTCTAAAAATCAGTGGTGCAGCTCTTGCCTGCACCGGTCCTAA 1073
Query 954 TAACATTGATCCAAAGGTAATCAATCTGATTGCAAGAGAAGTTGCAATGGCTTGTCGTCT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TAACATTGATCCAAAGGTAATCAATCTGATTGCAAGAGAAGTTGCAATGGCTTGTCGTCT 1133
Query 1014 TGGTGTAGAGGTAGCGATAGTTGTTGGGAGTCGGAACtttttttGTGGCAGCACATGGGT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGGTGTAGAGGTAGCGATAGTTGTTGGGAGTCGGAACTTTTTTTGTGGCAGCACATGGGT 1193
Query 1074 AACTGCCACTGGTTTGGATAGAACCACTGCATATCATATCAGTATGATGGCATCTGTGAT 1133
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1194 AACTGCCACTGGTTTGGATAGAACCACTGCATATCATATAAGTATGATGGCGTCTGTGAT 1253
Query 1134 GAACTCTGCTTTACTTCAATCATCCCTGGAGAAGATAGGGGTTCAGGCACGGTTACAAAC 1193
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 1254 GAACTCTGCTTTACTTCAATCGTCCCTGGAGAAAATAGGGGTGCAGGCACGGTTACAAAC 1313
Query 1194 TGCAATATCGGTTCAGGGTGTTGGGGAGCCTTACAATCGTCAACGAGCCACCCGGCATCT 1253
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TGCAATATCGGTTCAGGGTGTCGGGGAGCCTTACAATCGTCAACGAGCCACCCGGCATCT 1373
Query 1254 AGATAAGGGAAGAGTAGTAATATTTGGTGGAATCGGTGCAACGCTTGGAAATCCACTCTT 1313
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 1374 AGATAAGGGAAGAGTGGTAATATTTGGTGGCATCGGTGCCACGCTTGGAAATCCACTTTT 1433
Query 1314 ATCATCTGATGCATCTGCAGCCCTTCGAGCTATAGACATCAATGCGGAGGCAGTGGTGAA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 ATCATCTGATGCATCTGCAGCCCTTCGAGCTATAGACATCAATGCGGAGGCAGTGGTGAA 1493
Query 1374 AGGAACAAACGTTGATGGTGTTTATGACTGCCATTCACAAGATAGTAACGTGACATTTGA 1433
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1494 AGGAACAAACGTTGATGGTGTTTATGACTGTCATTCACAAGATAGTAACGTGACATTTGA 1553
Query 1434 GCACATATCATTTCAAGATTTGGCTTCTAGAGGTCTTACGTCAATGGATACAATGGCCCT 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GCACATATCATTTCAAGATTTGGCTTCTAGAGGTCTTACGTCAATGGATACAATGGCCCT 1613
Query 1494 TAACTTCTGTGAAGAGAACAGCATCCCAGCAGTTGTGGTATTTAACTTTCTGGAAGCTGG 1553
|||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1614 TAACTTTTGTGAAGAGAACAGCATTCCAG---TTGTGGTATTTAACTTTCTGGAAGCTGG 1670
Query 1554 GAACATCACAAAAGCGTTATGCGGAGAACAAGTGGGTACTTTGATCGATAGAA-CTGGAA 1612
||||||||||||||| || |||||||||||||||||||||||||||||||||| | ||||
Sbjct 1671 GAACATCACAAAAGCTTTGTGCGGAGAACAAGTGGGTACTTTGATCGATAGAAGC-GGAA 1729
Query 1613 GGGGTGTGAGTTAG 1626
|||| |||||||||
Sbjct 1730 GGGGCGTGAGTTAG 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5